This run was generated using rMAP version performed on 2021-09-03… Thank you for using this pipeline!!


Assembly summary statistics


Field Description
SampleID Name of the sample
TrimReads Total number of reads after quality filtering
MeanReadLen Average read length after quality filtering
Contigs Number of contigs of the draft genome (>200bp)
GenomeLength Length (bp) of the draft genome
LargestContig Length (bp) of the largest contig in the genome
N50 Length of the smallest contig in the set that contains the fewest (largest) contigs whose combined length represents at least 50% of the assembly
GC-Content GC content (%) of the draft genome
Depth Number of times each nucleotide position in the draft genome has a read that aligns to that position


SampleID TrimReads MeanReadLen Contigs GenomeLength LargestContig N50 GC-Content Depth
ID005zero 447672 129 70 4993383 556160 211386 50.60 11X
ID008 146 143 45 14384 415 358 50.15 1X
ID009 445827 137 647 5264283 116466 16469 57.36 11X
ID011 419430 133 323 5149794 151142 60552 50.75 10X
ID013 419323 132 2235 5680236 50661 4337 50.83 9X
ID014at24 402967 131 3801 7480294 39874 2836 50.64 7X
ID015HW 417149 132 127 4946518 258577 101369 50.83 11X
ID015at48 348445 134 141 4946083 261874 77897 50.83 9X
ID016at24 376407 134 164 5066617 206105 69000 50.76 9X
ID017at48 265213 137 281 5060662 148849 43286 50.71 7X
ID018at24 332021 133 112 5053728 322917 114340 50.53 8X
ID020at24 321023 133 150 4694658 304850 83486 50.63 9X
ID021at24 437154 132 149 4781760 208787 59208 50.64 12X
ID025III 47954 138 5432 5396283 7641 1066 53.02 1X
ID025II 409299 134 165 5064739 234487 77657 50.76 10X
ID025I 361054 132 133 5074111 342735 98841 50.77 9X
ID026 306128 128 133 5093392 293921 97680 50.72 7X
ID027 457381 129 151 5083310 252391 97639 50.74 11X
ID031 424851 132 91 5277895 439752 172240 50.57 10X
ID032I 371633 130 89 5249727 330993 158921 50.66 9X
ID033I 419857 129 131 4526608 244172 79601 50.73 11X
ID034II 407964 131 131 5072404 280895 106187 50.77 10X
ID034I 508184 133 141 5081530 254507 97496 50.74 13X
ID037 337693 132 149 4757913 225519 61221 50.78 9X
ID043I 377261 133 114 5131371 345412 117539 50.59 9X
ID045 319002 132 112 5080013 283826 147986 50.64 8X
ID047 335646 130 150 5226487 452233 102284 50.63 8X
ID050 531211 130 118 4897826 311054 106189 50.72 14X
ID051 311902 133 4256 6328658 38558 1853 50.21 6X
ID052 414620 132 171 5411328 295749 85770 50.48 10X
ID057 76108 134 142 4831648 201994 67497 50.64 2X
ID058 310873 132 2480 5006051 48769 2892 50.48 8X
ID066 457516 130 113 5009011 371379 179450 50.90 11X
ID070 401224 130 153 4932282 417517 83079 50.78 10X
ID073 380771 133 210 4913690 229261 59510 50.76 10X
ID081 352398 132 141 4937691 306082 83508 50.67 9X
ID096I 344533 137 358 5445707 100747 32529 57.15 8X
ID098 317029 133 721 5685500 149812 33837 50.40 7X
ID099 434039 133 136 4655534 221218 88674 50.72 12X
ID24 322189 130 115 5086874 314853 125472 50.76 8X

Select the parameter

Number of reads

Average number of reads per sample = 359277

Average read length

Average read length per sample = 133 bp

Number of contigs

Average number of contigs per sample = 612

Genome length

Average genome length per sample = 5034750 bp

Largest contig length

Average largest contig length per sample = 240554 bp

N50

Average N50 per sample = 80279 bp

GC content

Average GC content per sample = 51.051%

Sequencing depth

Average sequencing depth = 8.85X

Back to index

SNP-variant calling


Field Description
GenomePosition Position in the genome where SNP is found
Type Nature of the SNP identified (Only ‘True’ SNPs are shown by default)
ReferenceAllele Allele found in the reference genome
AlternateAllele Allele found in the genome of interest forming the SNP
Consequence Amino acid alterations caused by the SNP
AffectedGene The tartget gene affected by the SNP
Product The outcome from the presence of the SNP


Select the sample

ID005zero
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
317780 snp T A missense_variant c.540A>T p.Glu180Asp rclC reactive chlorine species resistance protein C
318124 snp A G missense_variant c.196T>C p.Tyr66His rclC reactive chlorine species resistance protein C
318312 snp T C missense_variant c.8A>G p.Lys3Arg rclC reactive chlorine species resistance protein C
743316 snp G C missense_variant c.490G>C p.Val164Leu ybgI radiation resistance protein YbgI
1006557 snp C T missense_variant c.1044G>A p.Met348Ile ycbX 6-N-hydroxylaminopurine resistance protein
1006777 snp G C missense_variant c.824C>G p.Ala275Gly ycbX 6-N-hydroxylaminopurine resistance protein
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216402 snp A T missense_variant c.34A>T p.Thr12Ser ariR regulator of acid resistance, influenced by indole
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1441532 snp C T missense_variant c.212G>A p.Ser71Asn hslJ lipoprotein implicated in Novobiocin resistance
1441685 snp T C missense_variant c.59A>G p.Asn20Ser hslJ lipoprotein implicated in Novobiocin resistance
1441725 snp A G missense_variant c.19T>C p.Phe7Leu hslJ lipoprotein implicated in Novobiocin resistance
1500741 snp A G missense_variant c.169A>G p.Ser57Gly tehA tellurite resistance protein
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620016 snp G A missense_variant c.28G>A p.Ala10Thr marB multiple antibiotic resistance protein
1620086 snp C G missense_variant c.98C>G p.Ala33Gly marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227353 snp A G missense_variant c.1406T>C p.Leu469Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2227422 snp G C missense_variant c.1337C>G p.Pro446Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227443 snp G C missense_variant c.1316C>G p.Ala439Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2227476 snp C G missense_variant c.1283G>C p.Arg428Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2227641 snp T A missense_variant c.1118A>T p.Gln373Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227767 snp G A missense_variant c.992C>T p.Ser331Phe mdtQ putative multidrug resistance outer membrane protein MdtQ
2227818 snp G A missense_variant c.941C>T p.Pro314Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227872 snp G C missense_variant c.887C>G p.Pro296Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227968 snp A G missense_variant c.791T>C p.Leu264Ser mdtQ putative multidrug resistance outer membrane protein MdtQ
2228004 snp C A missense_variant c.755G>T p.Gly252Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228397 snp G C missense_variant c.362C>G p.Ala121Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228444 snp T G missense_variant c.315A>C p.Arg105Ser mdtQ putative multidrug resistance outer membrane protein MdtQ
2228553 snp G T missense_variant c.206C>A p.Pro69His mdtQ putative multidrug resistance outer membrane protein MdtQ
2228567 snp T C missense_variant c.192A>G p.Ile64Met mdtQ putative multidrug resistance outer membrane protein MdtQ
2228649 snp G A missense_variant c.110C>T p.Pro37Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228654 snp T G missense_variant c.105A>C p.Gln35His mdtQ putative multidrug resistance outer membrane protein MdtQ
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
2630612 snp A G missense_variant c.287A>G p.Lys96Arg yfgI nalidixic acid resistance protein YfgI
3635776 snp G T missense_variant c.936G>T p.Met312Ile yhiM inner membrane protein with a role in acid resistance
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
3870310 snp T A missense_variant c.934T>A p.Trp312Arg cbrA colicin M resistance protein
4102929 snp G C missense_variant c.108G>C p.Glu36Asp yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
4103326 snp G A missense_variant c.505G>A p.Val169Met yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID008
## Error in read.table("ID008_amr_snps", header = T, sep = "\t", dec = ".", : no lines available in input
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
317780 snp T A missense_variant c.540A>T p.Glu180Asp rclC reactive chlorine species resistance protein C
318124 snp A G missense_variant c.196T>C p.Tyr66His rclC reactive chlorine species resistance protein C
318312 snp T C missense_variant c.8A>G p.Lys3Arg rclC reactive chlorine species resistance protein C
743316 snp G C missense_variant c.490G>C p.Val164Leu ybgI radiation resistance protein YbgI
1006557 snp C T missense_variant c.1044G>A p.Met348Ile ycbX 6-N-hydroxylaminopurine resistance protein
1006777 snp G C missense_variant c.824C>G p.Ala275Gly ycbX 6-N-hydroxylaminopurine resistance protein
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216402 snp A T missense_variant c.34A>T p.Thr12Ser ariR regulator of acid resistance, influenced by indole
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1441532 snp C T missense_variant c.212G>A p.Ser71Asn hslJ lipoprotein implicated in Novobiocin resistance
1441685 snp T C missense_variant c.59A>G p.Asn20Ser hslJ lipoprotein implicated in Novobiocin resistance
1441725 snp A G missense_variant c.19T>C p.Phe7Leu hslJ lipoprotein implicated in Novobiocin resistance
1500741 snp A G missense_variant c.169A>G p.Ser57Gly tehA tellurite resistance protein
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620016 snp G A missense_variant c.28G>A p.Ala10Thr marB multiple antibiotic resistance protein
1620086 snp C G missense_variant c.98C>G p.Ala33Gly marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227353 snp A G missense_variant c.1406T>C p.Leu469Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2227422 snp G C missense_variant c.1337C>G p.Pro446Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227443 snp G C missense_variant c.1316C>G p.Ala439Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2227476 snp C G missense_variant c.1283G>C p.Arg428Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2227641 snp T A missense_variant c.1118A>T p.Gln373Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227767 snp G A missense_variant c.992C>T p.Ser331Phe mdtQ putative multidrug resistance outer membrane protein MdtQ
2227818 snp G A missense_variant c.941C>T p.Pro314Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227872 snp G C missense_variant c.887C>G p.Pro296Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227968 snp A G missense_variant c.791T>C p.Leu264Ser mdtQ putative multidrug resistance outer membrane protein MdtQ
2228004 snp C A missense_variant c.755G>T p.Gly252Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228397 snp G C missense_variant c.362C>G p.Ala121Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228444 snp T G missense_variant c.315A>C p.Arg105Ser mdtQ putative multidrug resistance outer membrane protein MdtQ
2228553 snp G T missense_variant c.206C>A p.Pro69His mdtQ putative multidrug resistance outer membrane protein MdtQ
2228567 snp T C missense_variant c.192A>G p.Ile64Met mdtQ putative multidrug resistance outer membrane protein MdtQ
2228649 snp G A missense_variant c.110C>T p.Pro37Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228654 snp T G missense_variant c.105A>C p.Gln35His mdtQ putative multidrug resistance outer membrane protein MdtQ
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
2630612 snp A G missense_variant c.287A>G p.Lys96Arg yfgI nalidixic acid resistance protein YfgI
3635776 snp G T missense_variant c.936G>T p.Met312Ile yhiM inner membrane protein with a role in acid resistance
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
3870310 snp T A missense_variant c.934T>A p.Trp312Arg cbrA colicin M resistance protein
4102929 snp G C missense_variant c.108G>C p.Glu36Asp yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
4103326 snp G A missense_variant c.505G>A p.Val169Met yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID009
## Error in read.table("ID009_amr_snps", header = T, sep = "\t", dec = ".", : no lines available in input
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
317780 snp T A missense_variant c.540A>T p.Glu180Asp rclC reactive chlorine species resistance protein C
318124 snp A G missense_variant c.196T>C p.Tyr66His rclC reactive chlorine species resistance protein C
318312 snp T C missense_variant c.8A>G p.Lys3Arg rclC reactive chlorine species resistance protein C
743316 snp G C missense_variant c.490G>C p.Val164Leu ybgI radiation resistance protein YbgI
1006557 snp C T missense_variant c.1044G>A p.Met348Ile ycbX 6-N-hydroxylaminopurine resistance protein
1006777 snp G C missense_variant c.824C>G p.Ala275Gly ycbX 6-N-hydroxylaminopurine resistance protein
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216402 snp A T missense_variant c.34A>T p.Thr12Ser ariR regulator of acid resistance, influenced by indole
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1441532 snp C T missense_variant c.212G>A p.Ser71Asn hslJ lipoprotein implicated in Novobiocin resistance
1441685 snp T C missense_variant c.59A>G p.Asn20Ser hslJ lipoprotein implicated in Novobiocin resistance
1441725 snp A G missense_variant c.19T>C p.Phe7Leu hslJ lipoprotein implicated in Novobiocin resistance
1500741 snp A G missense_variant c.169A>G p.Ser57Gly tehA tellurite resistance protein
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620016 snp G A missense_variant c.28G>A p.Ala10Thr marB multiple antibiotic resistance protein
1620086 snp C G missense_variant c.98C>G p.Ala33Gly marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227353 snp A G missense_variant c.1406T>C p.Leu469Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2227422 snp G C missense_variant c.1337C>G p.Pro446Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227443 snp G C missense_variant c.1316C>G p.Ala439Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2227476 snp C G missense_variant c.1283G>C p.Arg428Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2227641 snp T A missense_variant c.1118A>T p.Gln373Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227767 snp G A missense_variant c.992C>T p.Ser331Phe mdtQ putative multidrug resistance outer membrane protein MdtQ
2227818 snp G A missense_variant c.941C>T p.Pro314Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227872 snp G C missense_variant c.887C>G p.Pro296Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227968 snp A G missense_variant c.791T>C p.Leu264Ser mdtQ putative multidrug resistance outer membrane protein MdtQ
2228004 snp C A missense_variant c.755G>T p.Gly252Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228397 snp G C missense_variant c.362C>G p.Ala121Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228444 snp T G missense_variant c.315A>C p.Arg105Ser mdtQ putative multidrug resistance outer membrane protein MdtQ
2228553 snp G T missense_variant c.206C>A p.Pro69His mdtQ putative multidrug resistance outer membrane protein MdtQ
2228567 snp T C missense_variant c.192A>G p.Ile64Met mdtQ putative multidrug resistance outer membrane protein MdtQ
2228649 snp G A missense_variant c.110C>T p.Pro37Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228654 snp T G missense_variant c.105A>C p.Gln35His mdtQ putative multidrug resistance outer membrane protein MdtQ
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
2630612 snp A G missense_variant c.287A>G p.Lys96Arg yfgI nalidixic acid resistance protein YfgI
3635776 snp G T missense_variant c.936G>T p.Met312Ile yhiM inner membrane protein with a role in acid resistance
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
3870310 snp T A missense_variant c.934T>A p.Trp312Arg cbrA colicin M resistance protein
4102929 snp G C missense_variant c.108G>C p.Glu36Asp yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
4103326 snp G A missense_variant c.505G>A p.Val169Met yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID011
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1441517 snp A T missense_variant c.227T>A p.Leu76Gln hslJ lipoprotein implicated in Novobiocin resistance
1441697 snp C T missense_variant c.47G>A p.Gly16Glu hslJ lipoprotein implicated in Novobiocin resistance
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
ID013
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
ID014at24
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
317780 snp T A missense_variant c.540A>T p.Glu180Asp rclC reactive chlorine species resistance protein C
318312 snp T C missense_variant c.8A>G p.Lys3Arg rclC reactive chlorine species resistance protein C
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
4103456 snp G A missense_variant c.635G>A p.Gly212Asp yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID015HW
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
318301 snp G T missense_variant c.19C>A p.Leu7Met rclC reactive chlorine species resistance protein C
1006886 snp C T missense_variant c.715G>A p.Gly239Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007267 snp C T missense_variant c.334G>A p.Gly112Arg ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1441604 snp C T missense_variant c.140G>A p.Ser47Asn hslJ lipoprotein implicated in Novobiocin resistance
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228331 snp A T missense_variant c.428T>A p.Val143Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630642 snp G A missense_variant c.317G>A p.Arg106His yfgI nalidixic acid resistance protein YfgI
3869713 snp G A missense_variant c.337G>A p.Ala113Thr cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870268 snp T G missense_variant c.892T>G p.Ser298Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
ID015at48
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
318301 snp G T missense_variant c.19C>A p.Leu7Met rclC reactive chlorine species resistance protein C
1006886 snp C T missense_variant c.715G>A p.Gly239Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007267 snp C T missense_variant c.334G>A p.Gly112Arg ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1441604 snp C T missense_variant c.140G>A p.Ser47Asn hslJ lipoprotein implicated in Novobiocin resistance
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228331 snp A T missense_variant c.428T>A p.Val143Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630642 snp G A missense_variant c.317G>A p.Arg106His yfgI nalidixic acid resistance protein YfgI
3869713 snp G A missense_variant c.337G>A p.Ala113Thr cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870268 snp T G missense_variant c.892T>G p.Ser298Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
ID016at24
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1007266 snp C T missense_variant c.335G>A p.Gly112Glu ycbX 6-N-hydroxylaminopurine resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
3635811 snp G A missense_variant c.971G>A p.Arg324Gln yhiM inner membrane protein with a role in acid resistance
ID017at48
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1007266 snp C T missense_variant c.335G>A p.Gly112Glu ycbX 6-N-hydroxylaminopurine resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
3635811 snp G A missense_variant c.971G>A p.Arg324Gln yhiM inner membrane protein with a role in acid resistance
ID018at24
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
317780 snp T A missense_variant c.540A>T p.Glu180Asp rclC reactive chlorine species resistance protein C
318124 snp A G missense_variant c.196T>C p.Tyr66His rclC reactive chlorine species resistance protein C
318312 snp T C missense_variant c.8A>G p.Lys3Arg rclC reactive chlorine species resistance protein C
743316 snp G C missense_variant c.490G>C p.Val164Leu ybgI radiation resistance protein YbgI
1006557 snp C T missense_variant c.1044G>A p.Met348Ile ycbX 6-N-hydroxylaminopurine resistance protein
1006777 snp G C missense_variant c.824C>G p.Ala275Gly ycbX 6-N-hydroxylaminopurine resistance protein
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216402 snp A T missense_variant c.34A>T p.Thr12Ser ariR regulator of acid resistance, influenced by indole
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1441532 snp C T missense_variant c.212G>A p.Ser71Asn hslJ lipoprotein implicated in Novobiocin resistance
1441685 snp T C missense_variant c.59A>G p.Asn20Ser hslJ lipoprotein implicated in Novobiocin resistance
1441725 snp A G missense_variant c.19T>C p.Phe7Leu hslJ lipoprotein implicated in Novobiocin resistance
1500741 snp A G missense_variant c.169A>G p.Ser57Gly tehA tellurite resistance protein
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620016 snp G A missense_variant c.28G>A p.Ala10Thr marB multiple antibiotic resistance protein
1620086 snp C G missense_variant c.98C>G p.Ala33Gly marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227353 snp A G missense_variant c.1406T>C p.Leu469Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2227422 snp G C missense_variant c.1337C>G p.Pro446Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227443 snp G C missense_variant c.1316C>G p.Ala439Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2227476 snp C G missense_variant c.1283G>C p.Arg428Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2227641 snp T A missense_variant c.1118A>T p.Gln373Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227767 snp G A missense_variant c.992C>T p.Ser331Phe mdtQ putative multidrug resistance outer membrane protein MdtQ
2227818 snp G A missense_variant c.941C>T p.Pro314Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227872 snp G C missense_variant c.887C>G p.Pro296Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227968 snp A G missense_variant c.791T>C p.Leu264Ser mdtQ putative multidrug resistance outer membrane protein MdtQ
2228004 snp C A missense_variant c.755G>T p.Gly252Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228397 snp G C missense_variant c.362C>G p.Ala121Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228444 snp T G missense_variant c.315A>C p.Arg105Ser mdtQ putative multidrug resistance outer membrane protein MdtQ
2228553 snp G T missense_variant c.206C>A p.Pro69His mdtQ putative multidrug resistance outer membrane protein MdtQ
2228567 snp T C missense_variant c.192A>G p.Ile64Met mdtQ putative multidrug resistance outer membrane protein MdtQ
2228649 snp G A missense_variant c.110C>T p.Pro37Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228654 snp T G missense_variant c.105A>C p.Gln35His mdtQ putative multidrug resistance outer membrane protein MdtQ
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
2630612 snp A G missense_variant c.287A>G p.Lys96Arg yfgI nalidixic acid resistance protein YfgI
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
3870310 snp T A missense_variant c.934T>A p.Trp312Arg cbrA colicin M resistance protein
4102929 snp G C missense_variant c.108G>C p.Glu36Asp yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
4103326 snp G A missense_variant c.505G>A p.Val169Met yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID020at24
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1007266 snp C T missense_variant c.335G>A p.Gly112Glu ycbX 6-N-hydroxylaminopurine resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
ID021at24
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1007259 snp G C missense_variant c.342C>G p.Phe114Leu ycbX 6-N-hydroxylaminopurine resistance protein
1216436 snp C T missense_variant c.68C>T p.Ser23Leu ariR regulator of acid resistance, influenced by indole
1441685 snp T C missense_variant c.59A>G p.Asn20Ser hslJ lipoprotein implicated in Novobiocin resistance
1441725 snp A G missense_variant c.19T>C p.Phe7Leu hslJ lipoprotein implicated in Novobiocin resistance
1501490 snp T G missense_variant c.918T>G p.Phe306Leu tehA tellurite resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228307 snp C T missense_variant c.452G>A p.Gly151Asp mdtQ putative multidrug resistance outer membrane protein MdtQ
2228496 snp A C missense_variant c.263T>G p.Phe88Cys mdtQ putative multidrug resistance outer membrane protein MdtQ
3869713 snp G A missense_variant c.337G>A p.Ala113Thr cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870268 snp T G missense_variant c.892T>G p.Ser298Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
ID025III
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
ID025II
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1007266 snp C T missense_variant c.335G>A p.Gly112Glu ycbX 6-N-hydroxylaminopurine resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
3635811 snp G A missense_variant c.971G>A p.Arg324Gln yhiM inner membrane protein with a role in acid resistance
ID025I
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1007266 snp C T missense_variant c.335G>A p.Gly112Glu ycbX 6-N-hydroxylaminopurine resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
3635811 snp G A missense_variant c.971G>A p.Arg324Gln yhiM inner membrane protein with a role in acid resistance
ID026
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1007266 snp C T missense_variant c.335G>A p.Gly112Glu ycbX 6-N-hydroxylaminopurine resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
3635811 snp G A missense_variant c.971G>A p.Arg324Gln yhiM inner membrane protein with a role in acid resistance
ID027
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1007266 snp C T missense_variant c.335G>A p.Gly112Glu ycbX 6-N-hydroxylaminopurine resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
3635811 snp G A missense_variant c.971G>A p.Arg324Gln yhiM inner membrane protein with a role in acid resistance
ID031
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
317780 snp T A missense_variant c.540A>T p.Glu180Asp rclC reactive chlorine species resistance protein C
318124 snp A G missense_variant c.196T>C p.Tyr66His rclC reactive chlorine species resistance protein C
318312 snp T C missense_variant c.8A>G p.Lys3Arg rclC reactive chlorine species resistance protein C
1006557 snp C T missense_variant c.1044G>A p.Met348Ile ycbX 6-N-hydroxylaminopurine resistance protein
1006753 snp A G missense_variant c.848T>C p.Ile283Thr ycbX 6-N-hydroxylaminopurine resistance protein
1006777 snp G C missense_variant c.824C>G p.Ala275Gly ycbX 6-N-hydroxylaminopurine resistance protein
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1169089 snp C A missense_variant c.17C>A p.Thr6Asn bhsA DUF1471 domain-containing multiple stress resistance outer membrane protein BhsA
1216402 snp A T missense_variant c.34A>T p.Thr12Ser ariR regulator of acid resistance, influenced by indole
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1441685 snp T C missense_variant c.59A>G p.Asn20Ser hslJ lipoprotein implicated in Novobiocin resistance
1441725 snp A G missense_variant c.19T>C p.Phe7Leu hslJ lipoprotein implicated in Novobiocin resistance
1500741 snp A G missense_variant c.169A>G p.Ser57Gly tehA tellurite resistance protein
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620016 snp G A missense_variant c.28G>A p.Ala10Thr marB multiple antibiotic resistance protein
1620086 snp C G missense_variant c.98C>G p.Ala33Gly marB multiple antibiotic resistance protein
1620106 snp C A missense_variant c.118C>A p.Pro40Thr marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227429 snp C T missense_variant c.1330G>A p.Glu444Lys mdtQ putative multidrug resistance outer membrane protein MdtQ
2227452 snp A G missense_variant c.1307T>C p.Leu436Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2227570 snp C T missense_variant c.1189G>A p.Gly397Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227818 snp G A missense_variant c.941C>T p.Pro314Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227968 snp A G missense_variant c.791T>C p.Leu264Ser mdtQ putative multidrug resistance outer membrane protein MdtQ
2228004 snp C A missense_variant c.755G>T p.Gly252Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228265 snp G A missense_variant c.494C>T p.Pro165Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228397 snp G C missense_variant c.362C>G p.Ala121Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228444 snp T G missense_variant c.315A>C p.Arg105Ser mdtQ putative multidrug resistance outer membrane protein MdtQ
2228530 snp T C missense_variant c.229A>G p.Thr77Ala mdtQ putative multidrug resistance outer membrane protein MdtQ
2228556 snp A G missense_variant c.203T>C p.Leu68Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2228628 snp G A missense_variant c.131C>T p.Ala44Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228689 snp G T missense_variant c.70C>A p.Pro24Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
3869486 snp G A missense_variant c.110G>A p.Cys37Tyr cbrA colicin M resistance protein
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
3870310 snp T A missense_variant c.934T>A p.Trp312Arg cbrA colicin M resistance protein
4102929 snp G C missense_variant c.108G>C p.Glu36Asp yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID032I
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
317780 snp T A missense_variant c.540A>T p.Glu180Asp rclC reactive chlorine species resistance protein C
318312 snp T C missense_variant c.8A>G p.Lys3Arg rclC reactive chlorine species resistance protein C
742927 snp C T missense_variant c.101C>T p.Thr34Met ybgI radiation resistance protein YbgI
1006777 snp G C missense_variant c.824C>G p.Ala275Gly ycbX 6-N-hydroxylaminopurine resistance protein
1006933 snp C T missense_variant c.668G>A p.Gly223Asp ycbX 6-N-hydroxylaminopurine resistance protein
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007131 snp T G missense_variant c.470A>C p.Asp157Ala ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216402 snp A T missense_variant c.34A>T p.Thr12Ser ariR regulator of acid resistance, influenced by indole
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1441685 snp T C missense_variant c.59A>G p.Asn20Ser hslJ lipoprotein implicated in Novobiocin resistance
1441725 snp A G missense_variant c.19T>C p.Phe7Leu hslJ lipoprotein implicated in Novobiocin resistance
1500741 snp A G missense_variant c.169A>G p.Ser57Gly tehA tellurite resistance protein
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1501299 snp C T missense_variant c.727C>T p.Arg243Cys tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620016 snp G A missense_variant c.28G>A p.Ala10Thr marB multiple antibiotic resistance protein
1620086 snp C G missense_variant c.98C>G p.Ala33Gly marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227452 snp A C missense_variant c.1307T>G p.Leu436Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227818 snp G A missense_variant c.941C>T p.Pro314Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227908 snp G A missense_variant c.851C>T p.Ala284Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227935 snp T A missense_variant c.824A>T p.Asn275Ile mdtQ putative multidrug resistance outer membrane protein MdtQ
2227949 snp A C missense_variant c.810T>G p.Ser270Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2228109 snp C G missense_variant c.650G>C p.Arg217Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2228145 snp C T missense_variant c.614G>A p.Cys205Tyr mdtQ putative multidrug resistance outer membrane protein MdtQ
2228151 snp C A missense_variant c.608G>T p.Arg203Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228241 snp C T missense_variant c.518G>A p.Gly173Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228265 snp G A missense_variant c.494C>T p.Pro165Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228277 snp C T missense_variant c.482G>A p.Arg161Gln mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228367 snp C A missense_variant c.392G>T p.Arg131Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228397 snp G C missense_variant c.362C>G p.Ala121Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2228406 snp C A missense_variant c.353G>T p.Arg118Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
4102929 snp G C missense_variant c.108G>C p.Glu36Asp yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID033I
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227588 snp G A missense_variant c.1171C>T p.Arg391Trp mdtQ putative multidrug resistance outer membrane protein MdtQ
3869407 snp C A missense_variant c.31C>A p.Leu11Ile cbrA colicin M resistance protein
3869713 snp G A missense_variant c.337G>A p.Ala113Thr cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870268 snp T G missense_variant c.892T>G p.Ser298Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
ID034II
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1007266 snp C T missense_variant c.335G>A p.Gly112Glu ycbX 6-N-hydroxylaminopurine resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
3635811 snp G A missense_variant c.971G>A p.Arg324Gln yhiM inner membrane protein with a role in acid resistance
ID034I
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1007266 snp C T missense_variant c.335G>A p.Gly112Glu ycbX 6-N-hydroxylaminopurine resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
3635811 snp G A missense_variant c.971G>A p.Arg324Gln yhiM inner membrane protein with a role in acid resistance
ID037
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
1216484 snp C A missense_variant c.116C>A p.Thr39Asn ariR regulator of acid resistance, influenced by indole
1441685 snp T C missense_variant c.59A>G p.Asn20Ser hslJ lipoprotein implicated in Novobiocin resistance
1441725 snp A G missense_variant c.19T>C p.Phe7Leu hslJ lipoprotein implicated in Novobiocin resistance
1501490 snp T G missense_variant c.918T>G p.Phe306Leu tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620058 snp A C missense_variant c.70A>C p.Thr24Pro marB multiple antibiotic resistance protein
1620086 snp C G missense_variant c.98C>G p.Ala33Gly marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228553 snp G T missense_variant c.206C>A p.Pro69His mdtQ putative multidrug resistance outer membrane protein MdtQ
3635508 snp A G missense_variant c.668A>G p.His223Arg yhiM inner membrane protein with a role in acid resistance
3869815 snp A T missense_variant c.439A>T p.Thr147Ser cbrA colicin M resistance protein
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
ID043I
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
743181 snp A T missense_variant c.355A>T p.Thr119Ser ybgI radiation resistance protein YbgI
1007522 snp C T missense_variant c.79G>A p.Val27Ile ycbX 6-N-hydroxylaminopurine resistance protein
1007576 snp T C missense_variant c.25A>G p.Ile9Val ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1441506 snp C T missense_variant c.238G>A p.Glu80Lys hslJ lipoprotein implicated in Novobiocin resistance
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620022 snp C T missense_variant c.34C>T p.Leu12Phe marB multiple antibiotic resistance protein
1620037 snp G A missense_variant c.49G>A p.Ala17Thr marB multiple antibiotic resistance protein
1620046 snp G A missense_variant c.58G>A p.Val20Ile marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227326 snp G A missense_variant c.1433C>T p.Ala478Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227422 snp G C missense_variant c.1337C>G p.Pro446Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227443 snp G C missense_variant c.1316C>G p.Ala439Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2227452 snp A C missense_variant c.1307T>G p.Leu436Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227563 snp G A missense_variant c.1196C>T p.Pro399Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227668 snp A G missense_variant c.1091T>C p.Val364Ala mdtQ putative multidrug resistance outer membrane protein MdtQ
2227818 snp G A missense_variant c.941C>T p.Pro314Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227935 snp T A missense_variant c.824A>T p.Asn275Ile mdtQ putative multidrug resistance outer membrane protein MdtQ
2227949 snp A C missense_variant c.810T>G p.Ser270Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2228109 snp C G missense_variant c.650G>C p.Arg217Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2228145 snp C T missense_variant c.614G>A p.Cys205Tyr mdtQ putative multidrug resistance outer membrane protein MdtQ
2228151 snp C A missense_variant c.608G>T p.Arg203Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228190 snp G A missense_variant c.569C>T p.Ala190Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228265 snp G A missense_variant c.494C>T p.Pro165Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228397 snp G C missense_variant c.362C>G p.Ala121Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228444 snp T G missense_variant c.315A>C p.Arg105Ser mdtQ putative multidrug resistance outer membrane protein MdtQ
2228502 snp C T missense_variant c.257G>A p.Ser86Asn mdtQ putative multidrug resistance outer membrane protein MdtQ
2228553 snp G T missense_variant c.206C>A p.Pro69His mdtQ putative multidrug resistance outer membrane protein MdtQ
2630356 snp G A missense_variant c.31G>A p.Ala11Thr yfgI nalidixic acid resistance protein YfgI
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
3635277 snp C T missense_variant c.437C>T p.Thr146Ile yhiM inner membrane protein with a role in acid resistance
3635534 snp T A missense_variant c.694T>A p.Phe232Ile yhiM inner membrane protein with a role in acid resistance
3869635 snp C T missense_variant c.259C>T p.Leu87Phe cbrA colicin M resistance protein
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870080 snp G A missense_variant c.704G>A p.Ser235Asn cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
4103121 snp G T missense_variant c.300G>T p.Met100Ile yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID045
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
317767 snp G A missense_variant c.553C>T p.Arg185Cys rclC reactive chlorine species resistance protein C
317874 snp C T missense_variant c.446G>A p.Gly149Asp rclC reactive chlorine species resistance protein C
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1441734 snp C G missense_variant c.10G>C p.Val4Leu hslJ lipoprotein implicated in Novobiocin resistance
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1500807 snp C A missense_variant c.235C>A p.Leu79Met tehA tellurite resistance protein
1501409 snp T A missense_variant c.837T>A p.Asp279Glu tehA tellurite resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228331 snp A T missense_variant c.428T>A p.Val143Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
3869713 snp G A missense_variant c.337G>A p.Ala113Thr cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
ID047
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6408 snp T G missense_variant c.52A>C p.Thr18Pro yaaA peroxide stress resistance protein YaaA
317736 snp G A missense_variant c.584C>T p.Thr195Ile rclC reactive chlorine species resistance protein C
317780 snp T G missense_variant c.540A>C p.Glu180Asp rclC reactive chlorine species resistance protein C
1006759 snp G A missense_variant c.842C>T p.Ala281Val ycbX 6-N-hydroxylaminopurine resistance protein
1006832 snp C T missense_variant c.769G>A p.Val257Ile ycbX 6-N-hydroxylaminopurine resistance protein
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1441506 snp C T missense_variant c.238G>A p.Glu80Lys hslJ lipoprotein implicated in Novobiocin resistance
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620022 snp C T missense_variant c.34C>T p.Leu12Phe marB multiple antibiotic resistance protein
1620037 snp G A missense_variant c.49G>A p.Ala17Thr marB multiple antibiotic resistance protein
1620046 snp G A missense_variant c.58G>A p.Val20Ile marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227443 snp G C missense_variant c.1316C>G p.Ala439Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2227452 snp A C missense_variant c.1307T>G p.Leu436Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227570 snp C T missense_variant c.1189G>A p.Gly397Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227818 snp G A missense_variant c.941C>T p.Pro314Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227935 snp T A missense_variant c.824A>T p.Asn275Ile mdtQ putative multidrug resistance outer membrane protein MdtQ
2227949 snp A C missense_variant c.810T>G p.Ser270Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2228109 snp C G missense_variant c.650G>C p.Arg217Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2228118 snp G A missense_variant c.641C>T p.Pro214Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228145 snp C T missense_variant c.614G>A p.Cys205Tyr mdtQ putative multidrug resistance outer membrane protein MdtQ
2228190 snp G A missense_variant c.569C>T p.Ala190Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228265 snp G A missense_variant c.494C>T p.Pro165Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228367 snp C A missense_variant c.392G>T p.Arg131Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228397 snp G C missense_variant c.362C>G p.Ala121Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2228406 snp C A missense_variant c.353G>T p.Arg118Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228530 snp T C missense_variant c.229A>G p.Thr77Ala mdtQ putative multidrug resistance outer membrane protein MdtQ
2228701 snp C T missense_variant c.58G>A p.Ala20Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2630545 snp G A missense_variant c.220G>A p.Ala74Thr yfgI nalidixic acid resistance protein YfgI
2630629 snp G C missense_variant c.304G>C p.Glu102Gln yfgI nalidixic acid resistance protein YfgI
3635277 snp C T missense_variant c.437C>T p.Thr146Ile yhiM inner membrane protein with a role in acid resistance
3635534 snp T A missense_variant c.694T>A p.Phe232Ile yhiM inner membrane protein with a role in acid resistance
3869866 snp C T missense_variant c.490C>T p.His164Tyr cbrA colicin M resistance protein
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870058 snp A G missense_variant c.682A>G p.Thr228Ala cbrA colicin M resistance protein
3870229 snp G A missense_variant c.853G>A p.Gly285Arg cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
4103121 snp G T missense_variant c.300G>T p.Met100Ile yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID050
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6288 snp C T missense_variant c.172G>A p.Gly58Ser yaaA peroxide stress resistance protein YaaA
1007266 snp C T missense_variant c.335G>A p.Gly112Glu ycbX 6-N-hydroxylaminopurine resistance protein
1500893 snp C G missense_variant c.321C>G p.Cys107Trp tehA tellurite resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2630545 snp G A missense_variant c.220G>A p.Ala74Thr yfgI nalidixic acid resistance protein YfgI
2630629 snp G C missense_variant c.304G>C p.Glu102Gln yfgI nalidixic acid resistance protein YfgI
ID051
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1006777 snp G C missense_variant c.824C>G p.Ala275Gly ycbX 6-N-hydroxylaminopurine resistance protein
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1500741 snp A G missense_variant c.169A>G p.Ser57Gly tehA tellurite resistance protein
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227767 snp G A missense_variant c.992C>T p.Ser331Phe mdtQ putative multidrug resistance outer membrane protein MdtQ
2227818 snp G A missense_variant c.941C>T p.Pro314Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227890 snp C G missense_variant c.869G>C p.Trp290Ser mdtQ putative multidrug resistance outer membrane protein MdtQ
2227908 snp G A missense_variant c.851C>T p.Ala284Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228265 snp G A missense_variant c.494C>T p.Pro165Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228397 snp G C missense_variant c.362C>G p.Ala121Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228444 snp T G missense_variant c.315A>C p.Arg105Ser mdtQ putative multidrug resistance outer membrane protein MdtQ
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
3635534 snp T A missense_variant c.694T>A p.Phe232Ile yhiM inner membrane protein with a role in acid resistance
3635595 snp C T missense_variant c.755C>T p.Ala252Val yhiM inner membrane protein with a role in acid resistance
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
ID052
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6408 snp T G missense_variant c.52A>C p.Thr18Pro yaaA peroxide stress resistance protein YaaA
303216 snp A G missense_variant c.226A>G p.Ile76Val yagU inner membrane protein that contributes to acid resistance
317780 snp T G missense_variant c.540A>C p.Glu180Asp rclC reactive chlorine species resistance protein C
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
743202 snp C T missense_variant c.376C>T p.Pro126Ser ybgI radiation resistance protein YbgI
1006759 snp G A missense_variant c.842C>T p.Ala281Val ycbX 6-N-hydroxylaminopurine resistance protein
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007074 snp A G missense_variant c.527T>C p.Val176Ala ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1216562 snp G A missense_variant c.194G>A p.Ser65Asn ariR regulator of acid resistance, influenced by indole
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1501518 snp G A missense_variant c.946G>A p.Val316Ile tehA tellurite resistance protein
1501537 snp T C missense_variant c.965T>C p.Val322Ala tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620037 snp G A missense_variant c.49G>A p.Ala17Thr marB multiple antibiotic resistance protein
1620046 snp G A missense_variant c.58G>A p.Val20Ile marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227422 snp G C missense_variant c.1337C>G p.Pro446Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227452 snp A G missense_variant c.1307T>C p.Leu436Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227818 snp G A missense_variant c.941C>T p.Pro314Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227935 snp T A missense_variant c.824A>T p.Asn275Ile mdtQ putative multidrug resistance outer membrane protein MdtQ
2227949 snp A C missense_variant c.810T>G p.Ser270Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227974 snp G A missense_variant c.785C>T p.Ala262Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228109 snp C G missense_variant c.650G>C p.Arg217Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2228145 snp C T missense_variant c.614G>A p.Cys205Tyr mdtQ putative multidrug resistance outer membrane protein MdtQ
2228151 snp C A missense_variant c.608G>T p.Arg203Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228256 snp A T missense_variant c.503T>A p.Val168Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228265 snp G A missense_variant c.494C>T p.Pro165Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228418 snp C T missense_variant c.341G>A p.Gly114Asp mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228530 snp T C missense_variant c.229A>G p.Thr77Ala mdtQ putative multidrug resistance outer membrane protein MdtQ
2228668 snp C T missense_variant c.91G>A p.Ala31Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
3635534 snp T A missense_variant c.694T>A p.Phe232Ile yhiM inner membrane protein with a role in acid resistance
3869447 snp G A missense_variant c.71G>A p.Gly24Asp cbrA colicin M resistance protein
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870058 snp A G missense_variant c.682A>G p.Thr228Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
4103121 snp G T missense_variant c.300G>T p.Met100Ile yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID057
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6401 snp G A missense_variant c.59C>T p.Thr20Met yaaA peroxide stress resistance protein YaaA
317737 snp T C missense_variant c.583A>G p.Thr195Ala rclC reactive chlorine species resistance protein C
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
318301 snp G T missense_variant c.19C>A p.Leu7Met rclC reactive chlorine species resistance protein C
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1007596 snp G A missense_variant c.5C>T p.Ala2Val ycbX 6-N-hydroxylaminopurine resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228331 snp A T missense_variant c.428T>A p.Val143Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
3869713 snp G A missense_variant c.337G>A p.Ala113Thr cbrA colicin M resistance protein
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
4103027 snp C T missense_variant c.206C>T p.Ala69Val yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
4103116 snp T C missense_variant c.295T>C p.Tyr99His yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID058
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
303016 snp C T missense_variant c.26C>T p.Pro9Leu yagU inner membrane protein that contributes to acid resistance
303486 snp G C missense_variant c.496G>C p.Val166Leu yagU inner membrane protein that contributes to acid resistance
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
ID066
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6339 snp G T missense_variant c.121C>A p.Leu41Met yaaA peroxide stress resistance protein YaaA
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007270 snp T G missense_variant c.331A>C p.Ser111Arg ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1007596 snp G A missense_variant c.5C>T p.Ala2Val ycbX 6-N-hydroxylaminopurine resistance protein
1169131 snp G A missense_variant c.59G>A p.Ser20Asn bhsA DUF1471 domain-containing multiple stress resistance outer membrane protein BhsA
1441734 snp C G missense_variant c.10G>C p.Val4Leu hslJ lipoprotein implicated in Novobiocin resistance
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1500807 snp C A missense_variant c.235C>A p.Leu79Met tehA tellurite resistance protein
1501409 snp T A missense_variant c.837T>A p.Asp279Glu tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620037 snp G A missense_variant c.49G>A p.Ala17Thr marB multiple antibiotic resistance protein
1620046 snp G A missense_variant c.58G>A p.Val20Ile marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228032 snp G T missense_variant c.727C>A p.Pro243Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2228331 snp A T missense_variant c.428T>A p.Val143Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
2630850 snp C A missense_variant c.525C>A p.Asp175Glu yfgI nalidixic acid resistance protein YfgI
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870268 snp T G missense_variant c.892T>G p.Ser298Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
ID070
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1007266 snp C T missense_variant c.335G>A p.Gly112Glu ycbX 6-N-hydroxylaminopurine resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228331 snp A T missense_variant c.428T>A p.Val143Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630642 snp G A missense_variant c.317G>A p.Arg106His yfgI nalidixic acid resistance protein YfgI
ID073
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620046 snp G A missense_variant c.58G>A p.Val20Ile marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227476 snp C G missense_variant c.1283G>C p.Arg428Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2228100 snp G A missense_variant c.659C>T p.Ala220Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228331 snp A T missense_variant c.428T>A p.Val143Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228553 snp G T missense_variant c.206C>A p.Pro69His mdtQ putative multidrug resistance outer membrane protein MdtQ
2228701 snp C T missense_variant c.58G>A p.Ala20Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
3635117 snp G A missense_variant c.277G>A p.Ala93Thr yhiM inner membrane protein with a role in acid resistance
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870058 snp A G missense_variant c.682A>G p.Thr228Ala cbrA colicin M resistance protein
3870160 snp G A missense_variant c.784G>A p.Val262Ile cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
3870268 snp T G missense_variant c.892T>G p.Ser298Ala cbrA colicin M resistance protein
3870276 snp A C missense_variant c.900A>C p.Leu300Phe cbrA colicin M resistance protein
4103389 snp C T missense_variant c.568C>T p.Arg190Cys yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID081
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6288 snp C T missense_variant c.172G>A p.Gly58Ser yaaA peroxide stress resistance protein YaaA
1007266 snp C T missense_variant c.335G>A p.Gly112Glu ycbX 6-N-hydroxylaminopurine resistance protein
1500893 snp C G missense_variant c.321C>G p.Cys107Trp tehA tellurite resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2630545 snp G A missense_variant c.220G>A p.Ala74Thr yfgI nalidixic acid resistance protein YfgI
2630629 snp G C missense_variant c.304G>C p.Glu102Gln yfgI nalidixic acid resistance protein YfgI
ID096I
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GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6288 snp C T missense_variant c.172G>A p.Gly58Ser yaaA peroxide stress resistance protein YaaA
1007266 snp C T missense_variant c.335G>A p.Gly112Glu ycbX 6-N-hydroxylaminopurine resistance protein
1500893 snp C G missense_variant c.321C>G p.Cys107Trp tehA tellurite resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2630545 snp G A missense_variant c.220G>A p.Ala74Thr yfgI nalidixic acid resistance protein YfgI
2630629 snp G C missense_variant c.304G>C p.Glu102Gln yfgI nalidixic acid resistance protein YfgI
ID098
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
317780 snp T A missense_variant c.540A>T p.Glu180Asp rclC reactive chlorine species resistance protein C
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007428 snp G A missense_variant c.173C>T p.Thr58Ile ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216402 snp A G missense_variant c.34A>G p.Thr12Ala ariR regulator of acid resistance, influenced by indole
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1216562 snp G A missense_variant c.194G>A p.Ser65Asn ariR regulator of acid resistance, influenced by indole
1500615 snp G A missense_variant c.43G>A p.Gly15Ser tehA tellurite resistance protein
1500741 snp A G missense_variant c.169A>G p.Ser57Gly tehA tellurite resistance protein
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1501399 snp G T missense_variant c.827G>T p.Ser276Ile tehA tellurite resistance protein
1501518 snp G A missense_variant c.946G>A p.Val316Ile tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227353 snp A G missense_variant c.1406T>C p.Leu469Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2227510 snp C T missense_variant c.1249G>A p.Ala417Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227560 snp A G missense_variant c.1199T>C p.Val400Ala mdtQ putative multidrug resistance outer membrane protein MdtQ
2227566 snp T C missense_variant c.1193A>G p.Gln398Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227872 snp G C missense_variant c.887C>G p.Pro296Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227935 snp T A missense_variant c.824A>T p.Asn275Ile mdtQ putative multidrug resistance outer membrane protein MdtQ
2227949 snp A C missense_variant c.810T>G p.Ser270Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2228109 snp C G missense_variant c.650G>C p.Arg217Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2228239 snp G A missense_variant c.520C>T p.Arg174Trp mdtQ putative multidrug resistance outer membrane protein MdtQ
2228265 snp G A missense_variant c.494C>T p.Pro165Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228367 snp C A missense_variant c.392G>T p.Arg131Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228397 snp G C missense_variant c.362C>G p.Ala121Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630364 snp A T missense_variant c.39A>T p.Leu13Phe yfgI nalidixic acid resistance protein YfgI
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
3635534 snp T A missense_variant c.694T>A p.Phe232Ile yhiM inner membrane protein with a role in acid resistance
3635595 snp C T missense_variant c.755C>T p.Ala252Val yhiM inner membrane protein with a role in acid resistance
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870080 snp G A missense_variant c.704G>A p.Ser235Asn cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
3870295 snp C A missense_variant c.919C>A p.Leu307Ile cbrA colicin M resistance protein
4102964 snp A T missense_variant c.143A>T p.Lys48Met yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID099
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
3869407 snp C A missense_variant c.31C>A p.Leu11Ile cbrA colicin M resistance protein
3869698 snp A C missense_variant c.322A>C p.Lys108Gln cbrA colicin M resistance protein
3869713 snp G A missense_variant c.337G>A p.Ala113Thr cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870268 snp T G missense_variant c.892T>G p.Ser298Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
ID24
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1007266 snp C T missense_variant c.335G>A p.Gly112Glu ycbX 6-N-hydroxylaminopurine resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
3635811 snp G A missense_variant c.971G>A p.Arg324Gln yhiM inner membrane protein with a role in acid resistance


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Phylogenetic inference

Phylogenetic inference based on vcf SNPS

Rectangular (phylogram)

Circular (phylogram)

Circular (cladogram)


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Antimicrobial Resistance Profiling


Field Description
Contig Contig name where the gene was found
Start Start position of the gene within the contig
End End position of the gene within the contig
Gene Antibiotic resistance gene
Gaps Gaps in subject (genome) and query (antibiotic resistance gene)
Coverage Proportion (%) of the gene covered
Identity Proportion (%) of exact nucleotide matches
Accession Accesion number of the antibiotic resistance gene
Product Antibiotic resistance gene product
Resistance Antibiotic that the gene confers resistance to


Select the samples and the database

ID005zero
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00021 43 903 aac(3)-IIa_1 0/0 100 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig00050 1540 2139 aac(6’)-Ib-cr_1 0/0 100 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00022 76948 77823 blaCTX-M-15_1 0/0 100 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00050 579 1409 blaOXA-1_1 0/0 100 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00003 55500 56732 mdf(A)_1 0/0 100 97.9 Y08743 mdf(A)
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00021 43 903 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00050 1540 2139 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00009 137147 140296 acrB 0/0 100.0 98.8 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00014 130171 133284 acrD 0/0 100.0 98.5 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00016 127223 128380 acrE 0/0 100.0 98.7 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00016 128392 131496 acrF 0/0 100.0 96.5 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00016 126162 126824 acrS 0/0 100.0 98.3 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00008 83334 84155 bacA 0/0 100.0 100.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00001 384476 385197 baeR 0/0 99.9 96.7 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00001 385194 386597 baeS 0/0 100.0 90.6 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00019 107883 109250 cpxA 0/0 99.6 98.6 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00006 15383 16015 CRP 0/0 100.0 99.0 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00022 76948 77823 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00024 49360 50532 emrA 0/0 100.0 98.1 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00024 50549 52087 emrB 0/0 100.0 98.1 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00001 86333 87388 emrK 0/0 100.0 97.3 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00024 48703 49233 emrR 0/0 100.0 98.5 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00001 87388 88926 emrY 0/0 100.0 97.7 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00010 138569 140212 eptA 0/0 100.0 91.1 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00009 140319 141512 Escherichia_coli_acrA 0/0 100.0 99.2 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00015 123964 125097 Escherichia_coli_ampC 0/0 100.0 98.0 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00009 47230 48387 Escherichia_coli_ampH 0/0 100.0 97.2 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00021 62521 62853 Escherichia_coli_emrE 0/0 100.0 92.2 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00003 55500 56732 Escherichia_coli_mdfA 0/0 100.0 96.3 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00001 85195 85809 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00001 81597 85190 evgS 0/0 100.0 99.4 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00006 194273 195001 gadW 0/0 100.0 99.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00006 195370 196194 gadX 0/0 100.0 93.8 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00018 22172 22585 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00003 199372 200044 kdpE 0/0 99.3 95.8 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00006 225535 225918 marA 0/0 100.0 98.2 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00001 394210 395457 mdtA 0/0 100.0 95.8 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00001 391088 394210 mdtB 0/0 100.0 95.9 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00001 388010 391087 mdtC 0/0 100.0 93.9 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00006 189615 190772 mdtE 0/0 100.0 98.5 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00006 190797 193910 mdtF 0/0 100.0 97.3 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00007 149242 150468 mdtG 0/0 100.0 98.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00007 159099 160307 mdtH 0/0 100.0 98.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00010 108311 109342 mdtN 0/0 100.0 94.9 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00010 106260 108311 mdtO 0/0 100.0 97.1 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00010 104797 106263 mdtP 0/0 100.0 97.7 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00007 22609 24357 msbA 0/0 100.0 98.1 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00050 579 1409 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00001 187873 188841 pmrF 0/0 100.0 97.7 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00008 106533 108020 tolC 0/0 100.0 100.0 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00001 449838 451004 ugd 0/0 100.0 97.0 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00001 247373 249016 yojI 0/0 100.0 97.9 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00021 43 903 (AGly)aac3-IIa 0/0 100 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig00015 123964 125097 (Bla)AmpC2_Ecoli 0/0 100 98.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00009 47230 48387 (Bla)ampH_Ecoli 0/0 100 97.2 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00022 76948 77823 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00050 579 1409 (Bla)blaOXA-1 0/0 100 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00003 253032 254933 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.5 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00021 43 903 aac(3)-IIe 0/0 100 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig00050 1540 2094 aac(6’)-Ib-D181Y 0/0 100 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00022 76948 77823 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00015 123964 125097 blaEC-5 0/0 100 99.8 NG_049085.1 cephalosporin-hydrolyzing class C beta-lactamase EC-5 CEPHALOSPORIN
contig00050 579 1409 blaOXA-1 0/0 100 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00021 43 903 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00009 140319 141512 ACRA 0/0 100.0 99.2 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00009 137147 140296 ACRB 0/0 100.0 98.8 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00014 130171 133284 ACRD 0/0 100.0 98.5 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00016 127223 128380 ACRE 0/0 100.0 98.7 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00016 128392 131496 ACRF 0/0 100.0 96.5 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00016 126162 126824 ACRS 0/0 100.0 98.3 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00009 47230 48387 AMPH 0/0 100.0 97.2 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00001 407120 408972 ASMA 0/0 100.0 97.5 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00008 83334 84155 BACA 0/0 100.0 100.0 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00001 384476 385197 BAER 0/0 99.9 96.7 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00001 385194 386597 BAES 0/0 100.0 90.6 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00001 272484 273674 BCR 0/0 100.0 96.3 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00015 123964 125097 BLAEC 0/0 100.0 99.8 MEG_1275 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00019 107188 107886 CPXAR 0/0 100.0 97.8 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00019 107883 109250 CPXAR 0/0 99.6 99.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00006 15383 16015 CRP 0/0 100.0 99.0 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00024 49360 50532 EMRA 0/0 100.0 98.1 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00024 50549 52087 EMRB 0/0 100.0 98.1 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00004 212397 213587 EMRD 0/0 100.0 97.7 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00001 86225 87388 EMRK 0/0 100.0 97.2 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00024 48703 49233 EMRR 0/0 100.0 98.5 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00001 87388 88926 EMRY 0/0 100.0 97.8 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00010 138569 140212 EPTA 0/0 100.0 91.1 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00001 81597 85190 EVGS 0/0 100.0 99.4 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00006 194273 195001 GADW 0/0 100.0 99.7 MEG_3082 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00006 195370 196194 GADX 0/0 100.0 93.8 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00018 22172 22585 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00003 199372 200044 KDPE 0/0 99.3 95.8 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00006 225529 225918 MARA 0/0 100.0 98.2 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00006 225080 225514 MARR 0/0 100.0 98.2 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00003 55500 56732 MDFA 0/0 100.0 98.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00001 394210 395457 MDTA 0/0 100.0 95.8 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00001 391088 394210 MDTB 0/0 100.0 95.9 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00001 388010 391087 MDTC 0/0 100.0 93.9 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00006 189615 190772 MDTE 0/0 100.0 98.5 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00006 190797 193910 MDTF 0/0 100.0 97.3 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00007 149242 150468 MDTG 0/0 100.0 98.5 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00007 159099 160307 MDTH 0/0 100.0 98.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00005 208181 208510 MDTI 0/0 100.0 98.8 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00005 207829 208194 MDTJ 0/0 100.0 97.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00005 125894 127266 MDTK 0/0 99.9 98.4 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00010 108311 109342 MDTN 0/0 100.0 94.9 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00010 106260 108311 MDTO 0/0 100.0 97.1 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00010 104797 106263 MDTP 0/0 100.0 97.7 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00007 22609 24357 MSBA 0/0 100.0 98.1 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00021 62521 62853 MVRC 0/0 100.0 92.2 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00050 579 1409 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00003 253032 254933 PBP2 0/0 100.0 98.5 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00001 187873 188841 PMRF 0/0 100.0 97.7 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00002 234544 235413 ROBA 0/0 100.0 97.2 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00010 76047 76369 SOXS 0/0 99.7 98.1 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00001 449838 451004 UGD 0/0 100.0 97.0 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00001 247373 249016 YOGI 0/0 100.0 97.9 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID008
Resfinder
## [1] "No antibiotic resistance genes from Resfinder database were found"
CARD
## [1] "No antibiotic resistance genes from CARD database were found"
ARG-ANNOT
## [1] "No antibiotic resistance genes from ARG-ANNOT database were found"
NCBI
## [1] "No antibiotic resistance genes from NCBI database were found"
MEGARES
## [1] "No antibiotic resistance genes from MEGARES database were found"
ID009
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00039 21173 21706 ant(2’’)-Ia_1 0/0 100 100.0 X04555 ant(2’’)-Ia Gentamicin, Tobramycin
contig00039 23573 24400 blaOXA-2_1 0/0 100 100.0 DQ112222 blaOXA-2 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Ceftazidime, Piperacillin
contig00016 41554 42414 blaSHV-18_1 0/0 100 100.0 AF132290 blaSHV-18 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00118 12802 13221 fosA_6 0/0 100 95.2 ACZD01000244 fosA Fosfomycin
contig00002 6240 7415 oqxA_1 0/0 100 93.5 EU370913 oqxA Nalidixic_acid, Ciprofloxacin
contig00002 3064 6216 oqxB_1 0/0 100 95.4 EU370913 oqxB Nalidixic_acid, Ciprofloxacin
contig00039 24850 25716 sul1_5 0/0 100 99.8 EU780013 sul1 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00039 21173 21706 ANT(2’’)-Ia 0/0 100.0 100.0 AF078527:3769-4303 Plasmid or integron-encoded nucleotidylylation of 2-deoxystreptamine aminoglycosides at the hydroxyl group at position 2’’ in P. aeruginosa K. pneumoniae Morganella morganii E. coli S. typhimurium C. freundii and A. baumannii aminoglycoside
contig00118 12802 13221 FosA5 0/0 100.0 94.3 KP143090.1:1619-1199 fosA5 is a fosfomycin resistance gene isolated from clinical strain of Escherichia coli E265. It is susceptible to amikacin tetracycline and imipenem and resistant to sulphonamide cephalosporins gentamicin ciprofloxacin chloramphenicol and streptomycin fosfomycin
contig00004 3141 4334 Klebsiella_pneumoniae_acrA 2/3 99.8 95.1 AJ318073.1:793-1990 AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae which is encoded by the acrRAB operon. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00246 2066 2395 Klebsiella_pneumoniae_KpnF 0/0 100.0 93.3 AP006725.1:2484238-2484568 KpnF subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan. aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline
contig00335 550 1722 Klebsiella_pneumoniae_KpnG 0/0 100.0 94.6 ACWO01000051.1:22092-23265 KpnG consists of ~390 residues and resembles EmrA of E. coli. Disruption of the pump components KpnG-KpnH signficantly decrease resistance to azithromycin ceftazidime ciprofloxacin ertapenem erythromycin gentamicin imipenem ticarcillin norfloxacin polymyxin-B piperacillin spectinomycin tobramycin and streptomycin aminoglycoside, carbapenem, cephalosporin, fluoroquinolone, macrolide, penam, penem, peptide
contig00053 1920 3044 Klebsiella_pneumoniae_OmpK37 0/0 100.0 92.5 AJ011502.1:300-1425 Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36 which did not allow penetration by certain beta-lactams. Also when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35. carbapenem, cephalosporin, cephamycin, monobactam, penam, penem
contig00002 6240 7415 oqxA 0/0 100.0 93.5 EU370913.1:46651-47827 RND efflux pump conferring resistance to fluoroquinolone diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline
contig00002 3064 6216 oqxB 0/0 100.0 95.4 EU370913.1:47850-51003 RND efflux pump conferring resistance to fluoroquinolone diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline
contig00039 23573 24400 OXA-2 0/0 100.0 100.0 M95287.4:2455-3283 OXA-2 is a beta-lactamase found in the Enterobacteriaceae family. carbapenem, cephalosporin, penam
contig00016 41554 42414 SHV-18 0/0 100.0 100.0 AF132290:87-948 SHV-18 is an extended-spectrum beta-lactamase found in Acinetobacter baumannii and Klebsiella pneumoniae. carbapenem, cephalosporin, penam
contig00039 24877 25716 sul1 0/0 100.0 99.9 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00039 21173 21706 (AGly)aadB 0/0 100 100.0 JQ690540:4275-4808 (AGly)aadB NA
contig00039 21786 22574 (AGly)aphA16 0/0 100 100.0 NG_051908:101-889 (AGly)aphA16 NA
contig00104 5274 6434 (Bla)ampH 0/0 100 96.0 CP003785:4208384-4209544 (Bla)ampH NA
contig00039 23573 24400 (Bla)blaOXA-2 0/0 100 100.0 HM131431:1-828 (Bla)blaOXA-2 NA
contig00016 41554 42414 (Bla)blaSHV-18 0/0 100 100.0 EU684753:1-861 (Bla)blaSHV-18 NA
contig00118 12802 13221 (Fcyn)FosA5 0/0 100 94.3 KP143090:1200-1619 (Fcyn)FosA5 NA
contig00002 6240 7415 (Flq)OqxA 0/0 100 93.5 EU370913:46652-47827 (Flq)OqxA NA
contig00002 3064 6216 (Flq)OqxBgb 0/0 100 95.4 EU370913:47851-51003 (Flq)OqxBgb NA
contig00039 24877 25716 (Sul)sul1 0/0 100 99.9 AF071413:6700-7539 (Sul)sul1 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00039 21173 21706 ant(2’’)-Ia 0/0 100 100.0 NG_047387.1 aminoglycoside nucleotidyltransferase ANT(2’’)-Ia GENTAMICIN, KANAMYCIN, TOBRAMYCIN
contig00039 21786 22574 aphA16 0/0 100 100.0 NG_051908.1 APH(3’) family aminoglycoside O-phosphotransferase AphA16 AMIKACIN, KANAMYCIN
contig00039 23573 24400 blaOXA-2 0/0 100 100.0 NG_049496.1 oxacillin-hydrolyzing class D beta-lactamase OXA-2 BETA-LACTAM
contig00016 41554 42414 blaSHV-18 0/0 100 100.0 NG_050047.1 class A extended-spectrum beta-lactamase SHV-18 CEPHALOSPORIN
contig00118 12802 13221 fosA_gen 0/0 100 95.2 NG_047881.1 FosA family fosfomycin resistance glutathione transferase FOSFOMYCIN
contig00002 6240 7415 oqxA10 0/0 100 93.8 NG_050418.1 multidrug efflux RND transporter periplasmic adaptor subunit OqxA10 PHENICOL, QUINOLONE
contig00002 3064 6216 oqxB11 0/0 100 95.9 NG_050429.1 multidrug efflux RND transporter permease subunit OqxB11 PHENICOL, QUINOLONE
contig00039 24877 25716 sul1 0/0 100 100.0 NG_048081.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00004 3141 4334 ACRA 2/3 99.8 95.1 MEG_400 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00104 5274 6434 AMPH 0/0 100.0 96.0 MEG_730 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00039 21023 21706 ANT2-DPRIME 1/3 100.0 99.6 MEG_757 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT2-DPRIME NA
contig00039 21786 22574 APH3-PRIME 0/0 100.0 100.0 MEG_1059 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-PRIME NA
contig00042 23627 25450 ASMA 0/0 100.0 93.7 MEG_1179 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00015 18768 19466 CPXAR 0/0 100.0 97.0 MEG_2116 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00015 19463 20836 CPXAR 0/0 100.0 95.8 MEG_2115 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00036 27126 28068 CTX 0/0 100.0 95.5 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00137 3057 3999 CTX 0/0 100.0 95.9 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00118 12802 13221 FOSA 0/0 100.0 95.2 MEG_2991 Drugs:Fosfomycin:Fosfomycin_thiol_transferases:FOSA NA
contig00005 53418 54649 KDEA 0/0 99.9 94.2 MEG_3447 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:KDEA NA
contig00335 550 1722 KPN 0/0 100.0 94.6 MEG_3512 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:KPN NA
contig00246 2066 2395 KPNF 0/0 100.0 93.3 MEG_3515 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:KPNF NA
contig00058 18712 19803 KPNO 2/6 99.5 95.3 MEG_3516 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:KPNO NA
contig00053 1920 3044 OMP37 0/0 100.0 92.5 MEG_4283 Drugs:betalactams:Mutant_porin_proteins:OMP37 NA
contig00002 6240 7415 OQXA 0/0 100.0 93.8 MEG_4326 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:OQXA NA
contig00002 3064 6216 OQXB 0/0 100.0 95.9 MEG_4364 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:OQXB NA
contig00039 23499 24625 OXA 0/0 95.5 99.5 MEG_5208 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00003 75561 77027 PHOR 0/0 100.0 93.6 MEG_5786 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_regulator:PHOR NA
contig00039 24536 24883 QACEDELTA1 0/0 100.0 100.0 MEG_5829 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:QACEDELTA1 NA
contig00016 41457 42460 SHV 0/0 99.7 99.6 MEG_6428 Drugs:betalactams:Class_A_betalactamases:SHV NA
contig00039 24876 25843 SULI 0/0 100.0 99.9 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
ID011
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00195 94 882 aadA5_1 0/0 100.0 100.0 AF137361 aadA5 Streptomycin
contig00255 8 844 aph(6)-Id_1 0/0 100.0 100.0 M28829 aph(6)-Id Streptomycin
contig00102 8896 9771 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00193 522 1382 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00195 1013 1486 dfrA17_1 0/0 100.0 100.0 FJ460238 dfrA17 Trimethoprim
contig00275 18 591 dfrA7_5 3/4 100.0 98.8 AJ419170 dfrA7 Trimethoprim
contig00039 1743 2975 mdf(A)_1 0/0 100.0 99.9 Y08743 mdf(A)
contig00260 67 988 mph(A)_2 1/1 100.0 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00102 3599 4255 qnrS1_1 0/0 100.0 100.0 AB187515 qnrS1 Ciprofloxacin
contig00219 162 1028 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00148 1335 2581 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00195 94 882 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00002 39532 42681 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00017 11081 14194 acrD 0/0 100.0 100.0 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00004 121480 124584 acrF 0/0 100.0 100.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00004 119523 120185 acrS 0/0 100.0 100.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00255 8 844 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00007 54644 55465 bacA 0/0 100.0 100.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00047 10640 11362 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00047 9240 10643 baeS 0/0 100.0 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00012 61077 62450 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00027 15387 16019 CRP 0/0 100.0 99.8 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00102 8896 9771 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00195 1013 1486 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00275 118 591 dfrA7 0/0 100.0 100.0 FJ854362:2338-2812 dfrA7 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00008 36546 37718 emrA 0/0 100.0 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00045 27995 29050 emrK 0/0 100.0 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00008 35889 36419 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00045 26457 27995 emrY 0/0 100.0 99.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00019 63251 64894 eptA 0/0 100.0 100.0 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00002 38316 39509 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00076 1 1129 Escherichia_coli_ampC 0/0 99.6 100.0 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00017 45575 46879 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 99.9 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00002 127675 128832 Escherichia_coli_ampH 0/0 100.0 99.9 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00039 1743 2975 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00045 29574 30188 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00045 30193 33786 evgS 0/0 100.0 99.7 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00041 2243 2971 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00041 1051 1875 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00049 33308 33721 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00095 7975 8652 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00008 37735 39273 Klebsiella_pneumoniae_KpnH 0/0 100.0 99.9 ASTU01000063.1:61248-62787 KpnH consists of ~511 residues resembles EmrB of E. coli and is probably a translocase in the KpnGH-TolC efflux protein in K. pneumoniae. Disruption of the pump components KpnG-KpnH signficantly decrease resistance to azithromycin ceftazidime ciprofloxacin ertapenem erythromycin gentamicin imipenem ticarcillin norfloxacin polymyxin-B piperacillin spectinomycin tobramycin and streptomycin. aminoglycoside, carbapenem, cephalosporin, fluoroquinolone, macrolide, penam, penem, peptide
contig00034 12803 13186 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00047 347 1594 mdtA 0/0 100.0 98.2 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00047 1594 4716 mdtB 0/0 100.0 97.6 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00047 4717 7794 mdtC 0/0 100.0 98.2 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00041 6472 7629 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00041 3334 6447 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00052 18399 19625 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00052 28254 29462 mdtH 0/0 100.0 100.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00070 380 1591 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00005 21785 22816 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00005 22816 24867 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00005 24864 26330 mdtP 0/0 100.0 99.9 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00260 67 972 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00030 9608 10084 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00010 21707 23455 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00013 58318 59286 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00102 3599 4255 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00219 162 1001 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00193 522 1382 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00148 1335 2581 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00007 30779 32266 tolC 0/0 100.0 100.0 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00140 141 1784 yojI 0/0 100.0 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00195 94 882 (AGly)aadA5 0/0 100.0 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00255 8 844 (AGly)strB 0/0 100.0 100.0 FJ474091:264-1100 (AGly)strB NA
contig00017 45575 46879 (Bla)AmpC1_Ecoli 0/0 100.0 99.9 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00076 1 1129 (Bla)AmpC2_Ecoli 0/0 99.6 100.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00002 127675 128832 (Bla)ampH_Ecoli 0/0 100.0 99.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00102 8896 9771 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00193 522 1382 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00016 45993 47894 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00102 3599 4255 (Flq)qnr-S1 0/0 100.0 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00260 67 972 (MLS)mph(A) 0/0 100.0 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00219 162 1001 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00148 1307 2581 (Tet)tetA 0/0 100.0 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00148 2612 3199 (Tet)tetR 0/0 90.3 100.0 HF545434:53576-54226 (Tet)tetR NA
contig00195 1013 1486 (Tmt)dfrA17 0/0 100.0 100.0 AB126604:98-571 (Tmt)dfrA17 NA
contig00275 118 591 (Tmt)dhfr7 0/0 100.0 100.0 X58425:594-1067 (Tmt)dhfr7 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00195 94 882 aadA5 0/0 100.0 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00255 8 844 aph(6)-Id 0/0 100.0 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00102 8896 9771 blaCTX-M-15 0/0 100.0 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00076 1 1129 blaEC 0/0 99.6 100.0 NG_047494.1 BlaEC family class C beta-lactamase BETA-LACTAM
contig00193 522 1382 blaTEM-1 0/0 100.0 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00195 1013 1486 dfrA17 0/0 100.0 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00275 118 591 dfrA7 0/0 100.0 100.0 NG_047737.1 trimethoprim-resistant dihydrofolate reductase DfrA7 TRIMETHOPRIM
contig00260 67 988 mph(A) 1/1 100.0 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00102 3599 4255 qnrS1 0/0 100.0 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig00219 162 1001 sul1 0/0 100.0 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00148 1307 2506 tet(A) 0/0 100.0 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00002 38316 39509 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00002 39532 42681 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00017 11081 14194 ACRD 0/0 100.0 100.0 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00004 121480 124584 ACRF 0/0 100.0 100.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00004 119523 120185 ACRS 0/0 100.0 100.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00076 1 1129 AMPC 0/0 99.6 100.0 MEG_728 Drugs:betalactams:Class_C_betalactamases:AMPC NA
contig00002 127675 128832 AMPH 0/0 100.0 99.9 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00195 94 882 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00255 8 844 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00055 9351 11203 ASMA 0/0 100.0 98.0 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00007 54644 55465 BACA 0/0 100.0 100.0 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00047 10640 11362 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00047 9240 10643 BAES 0/0 100.0 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00061 2095 3285 BCR 0/0 100.0 100.0 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00012 60382 61080 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00012 61077 62450 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00027 15387 16019 CRP 0/0 100.0 99.8 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00195 1013 1486 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00275 118 591 DFRA 0/0 100.0 100.0 MEG_2548 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00008 36546 37718 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00014 17254 18444 EMRD 0/0 100.0 99.9 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00045 27995 29158 EMRK 0/0 100.0 99.9 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00008 35889 36419 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00045 26457 27995 EMRY 0/0 100.0 99.1 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00019 63251 64894 EPTA 0/0 100.0 100.0 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00045 30193 33786 EVGS 0/0 100.0 99.7 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00041 2243 2971 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00041 1051 1875 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00049 33308 33721 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00095 7975 8652 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00008 37735 39273 KPN 0/0 100.0 99.9 MEG_3513 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:KPN NA
contig00034 12803 13192 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00034 13206 13640 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00039 1743 2975 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00047 347 1594 MDTA 0/0 100.0 98.2 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00047 1594 4716 MDTB 0/0 100.0 97.6 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00047 4717 7794 MDTC 0/0 100.0 98.2 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00041 6472 7629 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00041 3334 6447 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00052 18399 19625 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00052 28254 29462 MDTH 0/0 100.0 100.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00003 131924 132253 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00003 131572 131937 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00003 60170 61543 MDTK 0/0 100.0 100.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00070 380 1591 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00005 21785 22816 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00005 22816 24867 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00005 24864 26330 MDTP 0/0 100.0 99.9 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00260 67 988 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00030 9608 10084 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00010 21707 23455 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00016 45993 47894 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00017 45575 46879 PBP4B 0/0 100.0 99.9 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00013 58318 59286 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00102 3599 4255 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00023 46359 47228 ROBA 0/0 100.0 98.8 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00005 48173 48495 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00219 35 1002 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00193 504 1744 TEM 0/0 97.9 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00148 1307 2581 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00140 141 1784 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID013
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00121 6460 7320 aac(3)-IId_1 0/0 100 99.9 EU022314 aac(3)-IId Gentamicin, Tobramycin
contig00313 842 1645 aph(3’’)-Ib_5 0/0 100 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00313 6 842 aph(6)-Id_1 0/0 100 100.0 M28829 aph(6)-Id Streptomycin
contig00708 562 1437 blaCTX-M-27_1 0/0 100 100.0 AY156923 blaCTX-M-27 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00134 2038 2898 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig01337 387 860 dfrA17_1 0/0 100 100.0 FJ460238 dfrA17 Trimethoprim
contig00618 265 1028 erm(B)_18 2/2 100 99.0 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig00134 6109 7042 mph(A)_2 2/13 100 98.3 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00313 1706 2521 sul2_3 0/0 100 100.0 HQ840942 sul2 Sulfamethoxazole
contig00499 850 2055 tet(B)_2 0/0 100 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00121 6460 7320 AAC(3)-IId 0/0 100.0 99.9 EU022314.1:0-861 AAC(3)-IId is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig01076 509 1171 acrS 0/0 100.0 97.9 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00313 842 1645 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00313 6 842 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00626 1451 2270 bacA 0/0 99.8 97.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00298 3362 4083 baeR 0/0 99.9 97.4 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00298 1962 3365 baeS 0/0 100.0 90.1 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00708 562 1437 CTX-M-27 0/0 100.0 100.0 AY156923:0-876 CTX-M-27 is a beta-lactamase found in Escherichia coli cephalosporin
contig01337 387 860 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00501 943 2115 emrA 0/0 100.0 97.8 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00013 19083 20138 emrK 0/0 100.0 96.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00501 286 816 emrR 0/0 100.0 99.2 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00013 17545 19083 emrY 0/0 100.0 98.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00618 291 1036 ErmB 1/1 99.9 99.2 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig00041 8903 10207 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 95.4 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00402 89 3663 evgS 0/0 99.5 96.3 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig01206 403 1131 gadW 0/0 100.0 96.8 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig01290 366 1132 gadX 0/0 93.0 93.7 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig01085 753 1166 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00077 7214 7891 kdpE 0/0 100.0 96.6 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00075 249 632 marA 0/0 100.0 99.7 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00090 8496 9743 mdtA 0/0 100.0 95.6 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00273 268 1494 mdtG 0/0 100.0 98.0 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00236 3719 4927 mdtH 0/0 100.0 97.9 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00176 2303 3535 mdtM 0/0 100.0 96.3 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00352 3072 4015 mdtN 0/0 91.5 97.8 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00563 645 2111 mdtP 0/0 100.0 96.5 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00134 6125 7042 mphA 1/12 100.0 98.6 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00145 2809 3285 mphB 0/0 100.0 98.1 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00313 1706 2521 sul2 0/0 100.0 99.6 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00134 2038 2898 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00499 850 2055 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00181 3394 4560 ugd 0/0 100.0 97.3 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00121 6460 7320 (AGly)aac3-IId 0/0 100 99.9 EU022314:1-861 (AGly)aac3-IId NA
contig00313 842 1645 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00313 6 842 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00041 8903 10207 (Bla)AmpC1_Ecoli 0/0 100 95.4 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00708 562 1437 (Bla)blaCTX-M-27 0/0 100 100.0 AY156923:1-876 (Bla)blaCTX-M-27 NA
contig00134 2038 2898 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00618 291 1028 (MLS)erm(B) 0/0 100 99.6 M11180:714-1451 (MLS)erm(B) NA
contig00134 6125 7042 (MLS)mph(A) 1/12 100 98.6 DQ445270:1626-2531 (MLS)mph(A) NA
contig00313 1706 2521 (Sul)sul2 0/0 100 99.6 EU360945:1617-2432 (Sul)sul2 NA
contig00499 850 2055 (Tet)tetB 0/0 100 99.7 AB089594:1-1206 (Tet)tetB NA
contig01337 387 860 (Tmt)dfrA17 0/0 100 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00121 6460 7320 aac(3)-IId 0/0 100 100.0 NG_047251.1 aminoglycoside N-acetyltransferase AAC(3)-IId GENTAMICIN
contig00313 842 1669 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00313 6 842 aph(6)-Id 0/0 100 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00708 562 1437 blaCTX-M-27 0/0 100 100.0 NG_048976.1 class A extended-spectrum beta-lactamase CTX-M-27 CEPHALOSPORIN
contig00134 2038 2898 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig01337 387 860 dfrA17 0/0 100 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00618 291 1028 erm(B) 0/0 100 99.9 NG_047804.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) MACROLIDE
contig00134 6109 7042 mph(A) 2/13 100 98.3 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00313 1706 2521 sul2 0/0 100 99.9 NG_048118.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00499 850 2055 tet(B) 0/0 100 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00121 6460 7320 AAC3 0/0 100.0 100.0 MEG_64 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig01076 509 1171 ACRS 0/0 100.0 97.9 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00313 842 1669 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00313 6 842 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00426 1170 3023 ASMA 0/0 100.0 98.0 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00626 1451 2270 BACA 0/0 99.8 97.2 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00298 3362 4083 BAER 0/0 99.9 97.4 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00298 1962 3365 BAES 0/0 100.0 90.1 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig01054 82 1272 BCR 0/0 100.0 96.7 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00708 540 1443 CTX 0/0 100.0 99.8 MEG_2401 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig01337 387 860 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00501 943 2115 EMRA 0/0 100.0 97.8 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00013 19083 20246 EMRK 0/0 100.0 96.7 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00501 286 816 EMRR 0/0 100.0 99.2 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00013 17545 19083 EMRY 0/0 100.0 98.1 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00618 265 1028 ERMB 2/2 100.0 99.0 MEG_2801 Drugs:MLS:23S_rRNA_methyltransferases:ERMB NA
contig00402 89 3663 EVGS 0/0 99.5 97.4 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig01206 403 1131 GADW 0/0 100.0 97.1 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig01290 366 1132 GADX 0/0 93.0 93.7 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig01085 753 1166 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00077 7214 7891 KDPE 0/0 100.0 96.6 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00075 243 632 MARA 0/0 100.0 99.7 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00090 8496 9743 MDTA 0/0 100.0 95.6 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00273 268 1494 MDTG 0/0 100.0 98.3 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00236 3719 4927 MDTH 0/0 100.0 97.9 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00449 148 513 MDTJ 0/0 100.0 98.6 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00176 2303 3535 MDTM 0/0 100.0 96.3 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00352 3072 4015 MDTN 0/0 91.5 97.8 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00563 645 2111 MDTP 0/0 100.0 96.5 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00134 6109 7042 MPHA 2/13 100.0 98.3 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00145 2809 3285 MPHB 0/0 100.0 98.1 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00041 8903 10207 PBP4B 0/0 100.0 95.4 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00360 1212 2081 ROBA 0/0 100.0 99.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00567 451 773 SOXS 0/0 99.7 97.5 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00313 1706 2521 SULII 0/0 100.0 100.0 MEG_6618 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00499 850 2055 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00181 3394 4560 UGD 0/0 100.0 97.3 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
ID014at24
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig02215 28 888 aac(3)-IIa_1 0/0 100.0 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig01588 744 1343 aac(6’)-Ib-cr_1 0/0 100.0 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00690 1345 2133 aadA5_1 0/0 100.0 99.9 AF137361 aadA5 Streptomycin
contig00217 567 1370 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00620 1685 2560 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00063 5098 5958 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00614 183 665 dfrA14_5 0/0 100.0 99.6 DQ388123 dfrA14 Trimethoprim
contig00690 2264 2737 dfrA17_1 0/0 100.0 100.0 FJ460238 dfrA17 Trimethoprim
contig00063 357 1278 mph(A)_2 1/1 100.0 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00690 1 825 sul1_5 0/0 95.2 99.8 EU780013 sul1 Sulfamethoxazole
contig00217 1431 2246 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig01353 144 1390 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
contig00212 1997 3202 tet(B)_2 0/0 100.0 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig02215 28 888 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig01588 744 1343 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00690 1345 2133 aadA5 0/0 100.0 99.9 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00872 1299 1961 acrS 0/0 100.0 99.1 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00217 567 1370 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00546 1993 2814 bacA 0/0 100.0 100.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00040 66 1469 baeS 0/0 100.0 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig01125 280 1683 baeS 0/0 100.0 90.5 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00590 14 1387 cpxA 0/0 100.0 98.3 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00620 1685 2560 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00614 183 665 dfrA14 0/0 100.0 99.8 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00690 2264 2737 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00901 1043 2215 emrA 0/0 100.0 99.3 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00901 386 916 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00306 281 1819 emrY 0/0 100.0 99.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00798 1 1604 eptA 0/0 97.6 99.3 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00960 1 1604 eptA 0/0 97.6 91.3 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00567 944 2077 Escherichia_coli_ampC 0/0 100.0 98.4 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00140 5012 6316 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.6 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00137 5343 6500 Escherichia_coli_ampH 0/0 100.0 98.9 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00983 618 950 Escherichia_coli_emrE 0/0 100.0 92.2 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig01875 533 1147 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00476 1 3514 evgS 0/0 97.8 100.0 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig01144 177 905 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig01154 178 906 gadW 0/0 100.0 100.0 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig01410 783 1563 gadX 0/0 94.7 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig01957 363 1143 gadX 0/0 94.7 93.8 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00136 3266 3943 kdpE 0/0 100.0 99.8 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00040 9082 10329 mdtA 0/0 100.0 100.0 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig01993 1 1126 mdtA 0/0 90.2 95.4 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00040 5960 9082 mdtB 0/0 100.0 98.9 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00040 2882 5959 mdtC 0/0 100.0 99.9 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00979 1 1133 mdtG 1/1 92.3 99.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00373 234 1442 mdtH 0/0 100.0 97.8 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00324 263 1474 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00060 4283 5314 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig01887 1 973 mdtN 0/0 94.3 96.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00060 5314 7365 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00060 7362 8828 mdtP 0/0 100.0 99.9 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00063 373 1278 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00020 3085 3561 mphB 0/0 100.0 98.1 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00082 3188 4936 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00690 1 798 sul1 0/0 95.0 99.9 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00217 1431 2246 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00063 5098 5958 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig01353 144 1390 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00212 1997 3202 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00680 587 1753 ugd 0/0 100.0 96.0 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig02215 28 888 (AGly)aac3-IIa 0/0 100 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig00690 1345 2133 (AGly)aadA5 0/0 100 99.9 AF137361:64-852 (AGly)aadA5 NA
contig00217 567 1370 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00140 5012 6316 (Bla)AmpC1_Ecoli 0/0 100 98.6 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00567 944 2077 (Bla)AmpC2_Ecoli 0/0 100 98.4 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00137 5343 6500 (Bla)ampH_Ecoli 0/0 100 98.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00620 1685 2560 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00063 5098 5958 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00063 373 1278 (MLS)mph(A) 0/0 100 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00690 1 798 (Sul)sul1 0/0 95 99.9 AF071413:6700-7539 (Sul)sul1 NA
contig00217 1431 2246 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig01353 116 1390 (Tet)tetA 0/0 100 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00212 1997 3202 (Tet)tetB 0/0 100 99.7 AB089594:1-1206 (Tet)tetB NA
contig00614 183 656 (Tmt)dfrA14 0/0 100 100.0 GU726917:72-545 (Tmt)dfrA14 NA
contig00690 2264 2737 (Tmt)dfrA17 0/0 100 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig02215 28 888 aac(3)-IIe 0/0 100.0 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig01588 744 1298 aac(6’)-Ib-D181Y 0/0 100.0 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00690 1345 2133 aadA5 0/0 100.0 99.9 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00217 567 1394 aph(3’’)-Ib 0/0 100.0 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00620 1685 2560 blaCTX-M-15 0/0 100.0 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00567 944 2077 blaEC 0/0 100.0 99.9 NG_047496.1 BlaEC family class C beta-lactamase BETA-LACTAM
contig00063 5098 5958 blaTEM-1 0/0 100.0 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00614 183 656 dfrA14 0/0 100.0 100.0 NG_056035.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00690 2264 2737 dfrA17 0/0 100.0 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00063 357 1278 mph(A) 1/1 100.0 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00690 1 798 sul1 0/0 96.4 99.9 NG_048089.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00217 1431 2246 sul2 0/0 100.0 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig01353 116 1315 tet(A) 0/0 100.0 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
contig00212 1997 3202 tet(B) 0/0 100.0 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig02215 28 888 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00872 1299 1961 ACRS 0/0 100.0 99.1 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00137 5343 6500 AMPH 0/0 100.0 98.9 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00690 1345 2133 ANT3-DPRIME 0/0 100.0 99.9 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00217 567 1394 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00546 1993 2814 BACA 0/0 100.0 100.0 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00040 66 1469 BAES 0/0 100.0 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig01125 280 1683 BAES 0/0 100.0 90.5 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00567 944 2077 BLAEC 0/0 100.0 99.9 MEG_1276 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00590 14 1387 CPXAR 0/0 100.0 98.8 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00614 183 656 DFRA 0/0 100.0 99.8 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00690 2264 2737 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00901 1043 2215 EMRA 0/0 100.0 99.3 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00901 386 916 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00306 281 1819 EMRY 0/0 100.0 99.1 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00798 1 1604 EPTA 0/0 97.6 99.3 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00960 1 1604 EPTA 0/0 97.6 91.3 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00476 1 3514 EVGS 0/0 97.8 100.0 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig01144 177 905 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig01154 178 906 GADW 0/0 100.0 100.0 MEG_3082 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig01410 783 1563 GADX 0/0 94.7 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig01957 363 1143 GADX 0/0 94.7 93.8 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00136 3266 3943 KDPE 0/0 100.0 99.8 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig01038 1256 1690 MARR 0/0 100.0 97.5 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig02349 256 690 MARR 0/0 100.0 98.2 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00040 9082 10329 MDTA 0/0 100.0 100.0 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig01993 1 1126 MDTA 0/0 90.2 95.4 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00040 5960 9082 MDTB 0/0 100.0 98.9 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00040 2882 5959 MDTC 0/0 100.0 99.9 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00979 1 1133 MDTG 1/1 92.3 99.8 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00373 234 1442 MDTH 0/0 100.0 97.8 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig01531 65 394 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig02284 674 979 MDTI 0/0 92.7 99.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00796 1232 2488 MDTK 0/0 91.5 98.9 MEG_3758 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00324 263 1474 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00060 4283 5314 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig01887 1 973 MDTN 0/0 94.3 96.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00060 5314 7365 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00060 7362 8828 MDTP 0/0 100.0 99.9 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00063 357 1278 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00020 3085 3561 MPHB 0/0 100.0 98.1 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00082 3188 4936 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00983 618 950 MVRC 0/0 100.0 92.2 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00140 5012 6316 PBP4B 0/0 100.0 98.6 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00958 459 1328 ROBA 0/0 100.0 98.8 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00221 2037 2359 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00690 1 885 SULI 0/0 95.5 99.9 MEG_6616 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00217 1431 2246 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00063 5080 6325 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig01353 116 1390 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00212 1997 3202 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00212 3996 4412 TETD 0/0 100.0 100.0 MEG_7070 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETD NA
contig00680 587 1753 UGD 0/0 100.0 96.0 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
ID015HW
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00077 901 1702 aadA2_1 0/0 97.9 99.9 NC_010870 aadA2 Streptomycin
contig00024 79762 80637 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00076 5984 6643 catA1_1 0/0 100.0 99.8 V00622 catA1 Chloramphenicol
contig00077 6 503 dfrA12_8 0/0 100.0 99.8 AM040708 dfrA12 Trimethoprim
contig00084 2247 3010 erm(B)_18 2/2 100.0 99.0 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig00001 25629 26861 mdf(A)_1 0/0 100.0 98.5 Y08743 mdf(A)
contig00084 161 1091 mph(A)_2 2/10 100.0 98.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00077 2180 3046 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00086 800 2005 tet(B)_2 0/0 100.0 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00077 923 1702 aadA2 0/0 100.0 99.9 AF156486:5012-5792 aadA2 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in K. pneumoniae Salmonella spp. Corynebacterium glutamicum C. freundii and Aeromonas spp. aminoglycoside
contig00010 89029 92178 acrB 0/0 100.0 99.1 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00002 101962 105075 acrD 0/0 100.0 98.9 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00003 223403 224560 acrE 0/0 100.0 98.8 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00003 224572 227676 acrF 0/0 100.0 99.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00003 222342 223004 acrS 0/0 100.0 99.4 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00003 13409 14228 bacA 0/0 99.8 98.9 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00018 65847 66569 baeR 0/0 100.0 99.3 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00018 64447 65850 baeS 0/0 100.0 99.6 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00076 5984 6643 catI 0/0 100.0 99.8 V00622:243-903 catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii phenicol
contig00029 22407 23780 cpxA 0/0 100.0 98.8 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00005 15387 16019 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00024 79762 80637 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00077 6 503 dfrA12 0/0 100.0 99.8 GU585907.1:22103-21605 dfrA12 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00066 5291 6463 emrA 0/0 100.0 98.2 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00066 3736 5274 emrB 0/0 100.0 99.9 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00002 10208 11263 emrK 0/0 100.0 99.2 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00066 6590 7120 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00002 8670 10208 emrY 0/0 100.0 99.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00031 18311 19954 eptA 0/0 100.0 99.4 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00084 2273 3018 ErmB 1/1 99.9 99.2 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig00010 92201 93394 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00032 48509 49642 Escherichia_coli_ampC 0/0 100.0 97.5 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00002 69540 70844 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00010 683 1840 Escherichia_coli_ampH 0/0 100.0 99.2 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00001 25629 26861 Escherichia_coli_mdfA 0/0 100.0 96.9 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00002 11787 12401 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00002 12406 15999 evgS 0/0 100.0 99.6 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00042 31471 32199 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00042 32567 33391 gadX 0/0 100.0 97.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00004 173845 174258 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00012 7933 8605 kdpE 0/0 99.3 97.2 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00030 40685 41068 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00018 55587 56834 mdtA 0/0 100.0 98.2 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00018 56834 59956 mdtB 0/0 100.0 98.0 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00018 59957 63034 mdtC 0/0 100.0 98.1 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00042 26813 27970 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00042 27995 31108 mdtF 0/0 100.0 98.5 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00025 38609 39835 mdtG 0/0 100.0 99.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00025 28770 29978 mdtH 0/0 100.0 98.5 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00053 356 1588 mdtM 0/0 100.0 96.8 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00016 10888 11919 mdtN 0/0 100.0 98.1 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00016 11919 13970 mdtO 0/0 100.0 98.3 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00016 13967 15433 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00084 189 1091 mphA 0/0 99.7 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00002 126351 126825 mphB 0/0 99.6 97.5 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00001 152597 154345 msbA 0/0 100.0 99.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00007 32303 33271 pmrF 0/0 100.0 99.5 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00077 2207 3046 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00086 800 2005 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00036 36177 37664 tolC 0/0 100.0 98.4 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00019 14595 16238 yojI 0/0 100.0 98.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00077 923 1702 (AGly)aadA2 0/0 100.0 99.9 X68227:66-945 (AGly)aadA2 NA
contig00002 69540 70844 (Bla)AmpC1_Ecoli 0/0 100.0 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00032 48509 49642 (Bla)AmpC2_Ecoli 0/0 100.0 97.5 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00010 683 1840 (Bla)ampH_Ecoli 0/0 100.0 99.2 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00024 79762 80637 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00012 60394 62295 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 99.4 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00084 2273 3010 (MLS)erm(B) 0/0 100.0 99.6 M11180:714-1451 (MLS)erm(B) NA
contig00084 189 1091 (MLS)mph(A) 0/0 99.7 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00076 5984 6643 (Phe)catA1 0/0 100.0 99.8 V00622:244-903 (Phe)catA1 NA
contig00077 2207 3046 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00086 800 2005 (Tet)tetB 0/0 100.0 99.7 AB089594:1-1206 (Tet)tetB NA
contig00077 6 503 (Tmt)dfrA12 0/0 100.0 99.8 Z21672:310-807 (Tmt)dfrA12 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00077 911 1702 aadA2 0/0 100 100.0 NG_047343.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA2 STREPTOMYCIN
contig00024 79762 80637 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00032 48509 49642 blaEC-13 0/0 100 99.9 NG_049079.1 class C extended-spectrum beta-lactamase EC-13 CEPHALOSPORIN
contig00076 5984 6643 catA1 0/0 100 99.8 NG_047582.1 type A-1 chloramphenicol O-acetyltransferase CHLORAMPHENICOL
contig00077 6 503 dfrA12 0/0 100 99.8 NG_047689.1 trimethoprim-resistant dihydrofolate reductase DfrA12 TRIMETHOPRIM
contig00084 2273 3010 erm(B) 0/0 100 99.9 NG_047804.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) MACROLIDE
contig00084 161 1091 mph(A) 2/10 100 98.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00077 2207 3046 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00086 800 2005 tet(B) 0/0 100 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00010 92201 93394 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00010 89029 92178 ACRB 0/0 100.0 99.1 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00002 101962 105075 ACRD 0/0 100.0 98.9 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00003 223403 224560 ACRE 0/0 100.0 98.8 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00003 224572 227676 ACRF 0/0 100.0 99.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00003 222342 223004 ACRS 0/0 100.0 99.4 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00010 683 1840 AMPH 0/0 100.0 99.2 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00077 901 1702 ANT3-DPRIME 0/0 97.9 99.9 MEG_975 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00018 41800 43652 ASMA 0/0 100.0 98.4 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00003 13409 14228 BACA 0/0 99.8 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00018 65847 66569 BAER 0/0 100.0 99.3 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00018 64447 65850 BAES 0/0 100.0 99.6 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00019 41510 42700 BCR 0/0 100.0 98.2 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00032 48509 49642 BLAEC 0/0 100.0 99.9 MEG_1280 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00076 5984 6648 CATA 0/0 99.1 100.0 MEG_1593 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig00029 21712 22410 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00029 22407 23780 CPXAR 0/0 100.0 99.5 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00005 15387 16019 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00018 92803 93691 CTX 0/0 100.0 97.4 MEG_2430 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00077 6 503 DFRA 0/0 100.0 99.8 MEG_2551 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00066 5291 6463 EMRA 0/0 100.0 98.2 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00066 3736 5274 EMRB 0/0 100.0 99.9 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00014 22228 23418 EMRD 0/0 100.0 99.8 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00002 10208 11371 EMRK 0/0 100.0 99.2 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00066 6590 7120 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00002 8670 10208 EMRY 0/0 100.0 99.1 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00031 18311 19954 EPTA 0/0 100.0 99.4 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00084 2247 3010 ERMB 2/2 100.0 99.0 MEG_2801 Drugs:MLS:23S_rRNA_methyltransferases:ERMB NA
contig00002 12406 15999 EVGS 0/0 100.0 99.6 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00042 31471 32199 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00042 32567 33391 GADX 0/0 100.0 97.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00004 173845 174258 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00012 7933 8605 KDPE 0/0 99.3 97.2 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00030 40679 41068 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00030 40231 40665 MARR 0/0 100.0 98.2 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00001 25629 26861 MDFA 0/0 100.0 98.5 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00018 55587 56834 MDTA 0/0 100.0 98.2 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00018 56834 59956 MDTB 0/0 100.0 98.0 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00018 59957 63034 MDTC 0/0 100.0 98.1 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00042 26813 27970 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00042 27995 31108 MDTF 0/0 100.0 98.5 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00025 38609 39835 MDTG 0/0 100.0 99.5 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00025 28770 29978 MDTH 0/0 100.0 98.5 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00021 35394 35723 MDTI 0/0 100.0 99.1 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00021 35042 35407 MDTJ 0/0 100.0 99.7 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00017 65582 66955 MDTK 0/0 100.0 99.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00053 356 1588 MDTM 0/0 100.0 96.8 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00016 10888 11919 MDTN 0/0 100.0 98.1 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00016 11919 13970 MDTO 0/0 100.0 98.3 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00016 13967 15433 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00084 161 1091 MPHA 2/10 100.0 98.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00002 126351 126825 MPHB 0/0 99.6 97.5 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00001 152597 154345 MSBA 0/0 100.0 99.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00012 60394 62295 PBP2 0/0 100.0 99.4 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00002 69540 70844 PBP4B 0/0 100.0 98.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00007 32303 33271 PMRF 0/0 100.0 99.5 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00027 11922 12791 ROBA 0/0 100.0 99.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00016 37049 37372 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00077 2206 3173 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00086 800 2005 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00086 2799 3215 TETD 0/0 100.0 100.0 MEG_7070 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETD NA
contig00019 14595 16238 YOGI 0/0 100.0 98.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID015at48
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00085 901 1702 aadA2_1 0/0 97.9 99.9 NC_010870 aadA2 Streptomycin
contig00006 2052 2927 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00087 1420 2079 catA1_1 0/0 100.0 99.8 V00622 catA1 Chloramphenicol
contig00085 6 503 dfrA12_8 0/0 100.0 99.8 AM040708 dfrA12 Trimethoprim
contig00096 2354 3117 erm(B)_18 2/2 100.0 99.0 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig00037 18321 19553 mdf(A)_1 0/0 100.0 98.5 Y08743 mdf(A)
contig00096 268 1198 mph(A)_2 2/10 100.0 98.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00085 2180 3046 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00098 800 2005 tet(B)_2 0/0 100.0 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00085 923 1702 aadA2 0/0 100.0 99.9 AF156486:5012-5792 aadA2 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in K. pneumoniae Salmonella spp. Corynebacterium glutamicum C. freundii and Aeromonas spp. aminoglycoside
contig00014 89029 92178 acrB 0/0 100.0 99.1 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00001 123264 126377 acrD 0/0 100.0 98.9 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00002 223403 224560 acrE 0/0 100.0 98.8 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00002 224572 227676 acrF 0/0 100.0 99.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00002 222342 223004 acrS 0/0 100.0 99.4 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00002 13409 14228 bacA 0/0 99.8 98.9 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00013 65847 66569 baeR 0/0 100.0 99.3 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00013 64447 65850 baeS 0/0 100.0 99.6 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00087 1420 2079 catI 0/0 100.0 99.8 V00622:243-903 catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii phenicol
contig00056 22407 23780 cpxA 0/0 100.0 98.8 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00007 15387 16019 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00006 2052 2927 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00085 6 503 dfrA12 0/0 100.0 99.8 GU585907.1:22103-21605 dfrA12 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00055 5175 6347 emrA 0/0 100.0 98.2 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00055 3620 5158 emrB 0/0 100.0 99.9 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00001 31510 32565 emrK 0/0 100.0 99.2 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00055 6474 7004 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00001 29972 31510 emrY 0/0 100.0 99.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00030 18346 19989 eptA 0/0 100.0 99.4 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00096 2380 3125 ErmB 1/1 99.9 99.2 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig00014 92201 93394 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00031 49645 50778 Escherichia_coli_ampC 0/0 100.0 97.5 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00001 90842 92146 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00014 683 1840 Escherichia_coli_ampH 0/0 100.0 99.2 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00037 18321 19553 Escherichia_coli_mdfA 0/0 100.0 96.9 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00001 33089 33703 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00001 33708 37301 evgS 0/0 100.0 99.6 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00020 31471 32199 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00020 32567 33391 gadX 0/0 100.0 97.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00018 10093 10506 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00045 8520 9192 kdpE 0/0 99.3 97.2 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00028 40685 41068 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00013 55587 56834 mdtA 0/0 100.0 98.2 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00013 56834 59956 mdtB 0/0 100.0 98.0 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00013 59957 63034 mdtC 0/0 100.0 98.1 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00020 26813 27970 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00020 27995 31108 mdtF 0/0 100.0 98.5 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00006 121340 122566 mdtG 0/0 100.0 99.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00006 111501 112709 mdtH 0/0 100.0 98.5 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00019 52386 53618 mdtM 0/0 100.0 96.8 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00010 10863 11894 mdtN 0/0 100.0 98.1 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00010 11894 13945 mdtO 0/0 100.0 98.3 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00010 13942 15408 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00096 296 1198 mphA 0/0 99.7 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00001 147653 148127 mphB 0/0 99.6 97.5 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00003 31022 32770 msbA 0/0 100.0 99.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00011 16717 17685 pmrF 0/0 100.0 99.5 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00085 2207 3046 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00098 800 2005 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00035 36177 37664 tolC 0/0 100.0 98.4 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00032 30181 31824 yojI 0/0 100.0 98.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00085 923 1702 (AGly)aadA2 0/0 100.0 99.9 X68227:66-945 (AGly)aadA2 NA
contig00001 90842 92146 (Bla)AmpC1_Ecoli 0/0 100.0 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00031 49645 50778 (Bla)AmpC2_Ecoli 0/0 100.0 97.5 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00014 683 1840 (Bla)ampH_Ecoli 0/0 100.0 99.2 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00006 2052 2927 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00046 13699 15600 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 99.4 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00096 2380 3117 (MLS)erm(B) 0/0 100.0 99.6 M11180:714-1451 (MLS)erm(B) NA
contig00096 296 1198 (MLS)mph(A) 0/0 99.7 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00087 1420 2079 (Phe)catA1 0/0 100.0 99.8 V00622:244-903 (Phe)catA1 NA
contig00085 2207 3046 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00098 800 2005 (Tet)tetB 0/0 100.0 99.7 AB089594:1-1206 (Tet)tetB NA
contig00085 6 503 (Tmt)dfrA12 0/0 100.0 99.8 Z21672:310-807 (Tmt)dfrA12 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00085 911 1702 aadA2 0/0 100 100.0 NG_047343.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA2 STREPTOMYCIN
contig00006 2052 2927 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00031 49645 50778 blaEC-13 0/0 100 99.9 NG_049079.1 class C extended-spectrum beta-lactamase EC-13 CEPHALOSPORIN
contig00087 1420 2079 catA1 0/0 100 99.8 NG_047582.1 type A-1 chloramphenicol O-acetyltransferase CHLORAMPHENICOL
contig00085 6 503 dfrA12 0/0 100 99.8 NG_047689.1 trimethoprim-resistant dihydrofolate reductase DfrA12 TRIMETHOPRIM
contig00096 2380 3117 erm(B) 0/0 100 99.9 NG_047804.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) MACROLIDE
contig00096 268 1198 mph(A) 2/10 100 98.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00085 2207 3046 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00098 800 2005 tet(B) 0/0 100 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00014 92201 93394 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00014 89029 92178 ACRB 0/0 100.0 99.1 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00001 123264 126377 ACRD 0/0 100.0 98.9 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00002 223403 224560 ACRE 0/0 100.0 98.8 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00002 224572 227676 ACRF 0/0 100.0 99.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00002 222342 223004 ACRS 0/0 100.0 99.4 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00014 683 1840 AMPH 0/0 100.0 99.2 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00085 901 1702 ANT3-DPRIME 0/0 97.9 99.9 MEG_975 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00013 41800 43652 ASMA 0/0 100.0 98.4 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00002 13409 14228 BACA 0/0 99.8 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00013 65847 66569 BAER 0/0 100.0 99.3 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00013 64447 65850 BAES 0/0 100.0 99.6 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00017 83075 84265 BCR 0/0 100.0 98.2 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00031 49645 50778 BLAEC 0/0 100.0 99.9 MEG_1280 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00087 1415 2079 CATA 0/0 99.1 100.0 MEG_1593 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig00056 21712 22410 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00056 22407 23780 CPXAR 0/0 100.0 99.5 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00007 15387 16019 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00013 92803 93691 CTX 0/0 100.0 97.4 MEG_2430 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00085 6 503 DFRA 0/0 100.0 99.8 MEG_2551 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00055 5175 6347 EMRA 0/0 100.0 98.2 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00055 3620 5158 EMRB 0/0 100.0 99.9 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00009 22228 23418 EMRD 0/0 100.0 99.8 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00001 31510 32673 EMRK 0/0 100.0 99.2 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00055 6474 7004 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00001 29972 31510 EMRY 0/0 100.0 99.1 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00030 18346 19989 EPTA 0/0 100.0 99.4 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00096 2354 3117 ERMB 2/2 100.0 99.0 MEG_2801 Drugs:MLS:23S_rRNA_methyltransferases:ERMB NA
contig00001 33708 37301 EVGS 0/0 100.0 99.6 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00020 31471 32199 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00020 32567 33391 GADX 0/0 100.0 97.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00018 10093 10506 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00045 8520 9192 KDPE 0/0 99.3 97.2 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00028 40679 41068 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00028 40231 40665 MARR 0/0 100.0 98.2 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00037 18321 19553 MDFA 0/0 100.0 98.5 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00013 55587 56834 MDTA 0/0 100.0 98.2 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00013 56834 59956 MDTB 0/0 100.0 98.0 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00013 59957 63034 MDTC 0/0 100.0 98.1 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00020 26813 27970 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00020 27995 31108 MDTF 0/0 100.0 98.5 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00006 121340 122566 MDTG 0/0 100.0 99.5 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00006 111501 112709 MDTH 0/0 100.0 98.5 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00022 35375 35704 MDTI 0/0 100.0 99.1 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00022 35023 35388 MDTJ 0/0 100.0 99.7 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00051 31774 33147 MDTK 0/0 100.0 99.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00019 52386 53618 MDTM 0/0 100.0 96.8 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00010 10863 11894 MDTN 0/0 100.0 98.1 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00010 11894 13945 MDTO 0/0 100.0 98.3 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00010 13942 15408 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00096 268 1198 MPHA 2/10 100.0 98.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00001 147653 148127 MPHB 0/0 99.6 97.5 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00003 31022 32770 MSBA 0/0 100.0 99.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00046 13699 15600 PBP2 0/0 100.0 99.4 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00001 90842 92146 PBP4B 0/0 100.0 98.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00011 16717 17685 PMRF 0/0 100.0 99.5 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00064 11922 12791 ROBA 0/0 100.0 99.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00010 37024 37347 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00085 2206 3173 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00098 800 2005 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00098 2799 3215 TETD 0/0 100.0 100.0 MEG_7070 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETD NA
contig00032 30181 31824 YOGI 0/0 100.0 98.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID016at24
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00089 2721 3522 aadA2_1 0/0 97.9 99.9 NC_010870 aadA2 Streptomycin
contig00075 371 1246 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00089 1826 2323 dfrA12_8 0/0 100.0 100.0 AM040708 dfrA12 Trimethoprim
contig00128 263 1026 erm(B)_18 2/2 100.0 99.0 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig00009 30137 31369 mdf(A)_1 0/0 100.0 99.9 Y08743 mdf(A)
contig00139 68 998 mph(A)_2 2/10 100.0 98.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00089 4000 4866 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00123 850 2055 tet(B)_2 0/0 100.0 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00089 2743 3522 aadA2 0/0 100.0 99.9 AF156486:5012-5792 aadA2 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in K. pneumoniae Salmonella spp. Corynebacterium glutamicum C. freundii and Aeromonas spp. aminoglycoside
contig00001 99712 102861 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00068 11538 14651 acrD 0/0 100.0 100.0 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00058 8289 9446 acrE 0/0 100.0 99.9 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00058 5173 8277 acrF 0/0 100.0 99.9 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00058 9845 10507 acrS 0/0 100.0 100.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00006 90705 91526 bacA 0/0 100.0 99.9 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00049 29821 30543 baeR 0/0 100.0 99.6 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00049 28421 29824 baeS 0/0 100.0 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00012 48374 49747 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00010 15201 15833 CRP 0/0 100.0 99.7 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00075 371 1246 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00089 1826 2323 dfrA12 0/0 100.0 100.0 GU585907.1:22103-21605 dfrA12 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00003 90366 91538 emrA 0/0 100.0 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00003 91555 93093 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00017 1067 2122 emrK 0/0 100.0 99.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00003 89709 90239 emrR 0/0 100.0 99.8 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00030 7608 9251 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00128 289 1034 ErmB 1/1 99.9 99.2 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig00001 98496 99689 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00005 107745 108878 Escherichia_coli_ampC 0/0 100.0 100.0 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00017 65523 66827 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 100.0 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00001 187826 188983 Escherichia_coli_ampH 0/0 100.0 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00009 30137 31369 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00017 2646 3260 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00017 3265 6858 evgS 0/0 100.0 99.4 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00040 1784 2512 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00040 592 1416 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00059 24580 24993 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00019 8068 8745 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00050 31344 31727 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00049 19561 20808 mdtA 0/0 100.0 97.9 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00049 20808 23930 mdtB 0/0 100.0 99.2 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00049 23931 27008 mdtC 0/0 100.0 99.0 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00040 6013 7170 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00040 2875 5988 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00002 159289 160515 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00002 169144 170352 mdtH 0/0 100.0 100.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00063 473 1684 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00011 21720 22751 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00011 22751 24802 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00011 24799 26265 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00139 68 970 mphA 0/0 99.7 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00054 17756 18232 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00002 12783 14531 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00004 62210 63178 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00089 4027 4866 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00123 850 2055 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00006 66840 68327 tolC 0/0 100.0 100.0 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00004 2107 3750 yojI 0/0 100.0 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00089 2743 3522 (AGly)aadA2 0/0 100.0 99.9 X68227:66-945 (AGly)aadA2 NA
contig00017 65523 66827 (Bla)AmpC1_Ecoli 0/0 100.0 100.0 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00005 107745 108878 (Bla)AmpC2_Ecoli 0/0 100.0 100.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00001 187826 188983 (Bla)ampH_Ecoli 0/0 100.0 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00075 371 1246 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00019 60155 62056 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00128 289 1026 (MLS)erm(B) 0/0 100.0 99.6 M11180:714-1451 (MLS)erm(B) NA
contig00139 68 970 (MLS)mph(A) 0/0 99.7 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00089 4027 4866 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00123 850 2055 (Tet)tetB 0/0 100.0 99.7 AB089594:1-1206 (Tet)tetB NA
contig00089 1826 2323 (Tmt)dfrA12 0/0 100.0 100.0 Z21672:310-807 (Tmt)dfrA12 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00089 2731 3522 aadA2 0/0 100 100.0 NG_047343.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA2 STREPTOMYCIN
contig00075 371 1246 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00005 107745 108878 blaEC 0/0 100 100.0 NG_047494.1 BlaEC family class C beta-lactamase BETA-LACTAM
contig00089 1826 2323 dfrA12 0/0 100 100.0 NG_047689.1 trimethoprim-resistant dihydrofolate reductase DfrA12 TRIMETHOPRIM
contig00128 289 1026 erm(B) 0/0 100 99.9 NG_047804.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) MACROLIDE
contig00139 68 998 mph(A) 2/10 100 98.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00089 4027 4866 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00123 850 2055 tet(B) 0/0 100 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00001 98496 99689 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00001 99712 102861 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00068 11538 14651 ACRD 0/0 100.0 100.0 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00058 8289 9446 ACRE 0/0 100.0 99.9 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00058 5173 8277 ACRF 0/0 100.0 99.9 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00058 9845 10507 ACRS 0/0 100.0 100.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00005 107745 108878 AMPC 0/0 100.0 100.0 MEG_728 Drugs:betalactams:Class_C_betalactamases:AMPC NA
contig00001 187826 188983 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00089 2721 3522 ANT3-DPRIME 0/0 97.9 99.9 MEG_975 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00049 5770 7622 ASMA 0/0 100.0 97.5 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00006 90705 91526 BACA 0/0 100.0 99.9 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00049 29821 30543 BAER 0/0 100.0 99.6 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00049 28421 29824 BAES 0/0 100.0 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00020 49210 50400 BCR 0/0 100.0 99.9 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00012 47679 48377 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00012 48374 49747 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00010 15201 15833 CRP 0/0 100.0 99.7 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00143 62 1004 CTX 0/0 100.0 98.2 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00089 1826 2323 DFRA 0/0 100.0 100.0 MEG_2551 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00003 90366 91538 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00003 91555 93093 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00007 87171 88361 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00017 1067 2230 EMRK 0/0 100.0 99.7 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00003 89709 90239 EMRR 0/0 100.0 99.8 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00030 7608 9251 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00128 263 1026 ERMB 2/2 100.0 99.0 MEG_2801 Drugs:MLS:23S_rRNA_methyltransferases:ERMB NA
contig00017 3265 6858 EVGS 0/0 100.0 99.4 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00040 1784 2512 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00040 592 1416 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00059 24580 24993 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00019 8068 8745 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00050 31338 31727 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00050 30890 31324 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00009 30137 31369 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00049 19561 20808 MDTA 0/0 100.0 97.9 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00049 20808 23930 MDTB 0/0 100.0 99.2 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00049 23931 27008 MDTC 0/0 100.0 99.0 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00040 6013 7170 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00040 2875 5988 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00002 159289 160515 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00002 169144 170352 MDTH 0/0 100.0 100.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00048 1757 2086 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00048 2073 2438 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00022 31959 33332 MDTK 0/0 100.0 98.8 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00063 473 1684 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00011 21720 22751 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00011 22751 24802 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00011 24799 26265 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00139 68 998 MPHA 2/10 100.0 98.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00054 17756 18232 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00002 12783 14531 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00019 60155 62056 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00017 65523 66827 PBP4B 0/0 100.0 100.0 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00004 62210 63178 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00008 38665 39534 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00011 47882 48205 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00089 4026 4993 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00123 850 2055 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00004 2107 3750 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID017at48
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00152 2721 3522 aadA2_1 0/0 97.9 99.9 NC_010870 aadA2 Streptomycin
contig00190 1684 2559 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00187 2039 2899 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00152 1826 2323 dfrA12_8 0/0 100.0 100.0 AM040708 dfrA12 Trimethoprim
contig00199 263 1026 erm(B)_18 2/2 100.0 99.0 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig00017 30174 31406 mdf(A)_1 0/0 100.0 99.9 Y08743 mdf(A)
contig00152 4000 4866 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00186 850 2055 tet(B)_2 0/0 100.0 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00152 2743 3522 aadA2 0/0 100.0 99.9 AF156486:5012-5792 aadA2 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in K. pneumoniae Salmonella spp. Corynebacterium glutamicum C. freundii and Aeromonas spp. aminoglycoside
contig00006 39318 42467 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00066 12933 16046 acrD 0/0 100.0 100.0 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00137 5381 8485 acrF 0/0 100.0 99.9 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00077 20439 21101 acrS 0/0 100.0 100.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00004 65835 66656 bacA 0/0 100.0 99.9 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00095 10772 11494 baeR 0/0 100.0 99.6 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00095 9372 10775 baeS 0/0 100.0 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00005 31213 32586 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00074 14885 15517 CRP 0/0 100.0 99.7 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00190 1684 2559 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00152 1826 2323 dfrA12 0/0 100.0 100.0 GU585907.1:22103-21605 dfrA12 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00082 14502 15674 emrA 0/0 100.0 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00082 15691 17229 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00043 1067 2122 emrK 0/0 100.0 99.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00082 13845 14375 emrR 0/0 100.0 99.8 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00134 422 2065 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00199 289 1034 ErmB 1/1 99.9 99.2 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig00006 38102 39295 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00002 103325 104458 Escherichia_coli_ampC 0/0 100.0 100.0 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00068 19827 21131 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 100.0 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00012 35901 37058 Escherichia_coli_ampH 0/0 100.0 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00017 30174 31406 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00043 2646 3260 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00043 3265 6858 evgS 0/0 100.0 99.4 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00046 1586 2314 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00046 394 1218 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00065 22020 22433 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00054 8962 9639 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00127 6406 6789 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00095 512 1759 mdtA 0/0 100.0 97.9 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00095 1759 4881 mdtB 0/0 100.0 99.2 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00095 4882 7959 mdtC 0/0 100.0 99.0 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00046 5815 6972 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00046 2677 5790 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00030 16606 17832 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00030 26461 27669 mdtH 0/0 100.0 100.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00069 262 1473 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00024 20208 21239 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00024 21239 23290 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00024 23287 24753 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00113 7732 8208 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00023 19048 20796 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00001 41659 42627 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00152 4027 4866 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00187 2039 2899 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00186 850 2055 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00004 89034 90521 tolC 0/0 100.0 100.0 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00084 16770 18413 yojI 0/0 100.0 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00152 2743 3522 (AGly)aadA2 0/0 100 99.9 X68227:66-945 (AGly)aadA2 NA
contig00068 19827 21131 (Bla)AmpC1_Ecoli 0/0 100 100.0 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00002 103325 104458 (Bla)AmpC2_Ecoli 0/0 100 100.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00012 35901 37058 (Bla)ampH_Ecoli 0/0 100 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00190 1684 2559 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00187 2039 2899 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00136 3245 5146 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00199 289 1026 (MLS)erm(B) 0/0 100 99.6 M11180:714-1451 (MLS)erm(B) NA
contig00152 4027 4866 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00186 850 2055 (Tet)tetB 0/0 100 99.7 AB089594:1-1206 (Tet)tetB NA
contig00152 1826 2323 (Tmt)dfrA12 0/0 100 100.0 Z21672:310-807 (Tmt)dfrA12 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00152 2731 3522 aadA2 0/0 100 100.0 NG_047343.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA2 STREPTOMYCIN
contig00190 1684 2559 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00002 103325 104458 blaEC 0/0 100 100.0 NG_047494.1 BlaEC family class C beta-lactamase BETA-LACTAM
contig00187 2039 2899 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00152 1826 2323 dfrA12 0/0 100 100.0 NG_047689.1 trimethoprim-resistant dihydrofolate reductase DfrA12 TRIMETHOPRIM
contig00199 289 1026 erm(B) 0/0 100 99.9 NG_047804.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) MACROLIDE
contig00152 4027 4866 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00186 850 2055 tet(B) 0/0 100 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00006 38102 39295 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00006 39318 42467 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00066 12933 16046 ACRD 0/0 100.0 100.0 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00137 5381 8485 ACRF 0/0 100.0 99.9 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00077 20439 21101 ACRS 0/0 100.0 100.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00002 103325 104458 AMPC 0/0 100.0 100.0 MEG_728 Drugs:betalactams:Class_C_betalactamases:AMPC NA
contig00012 35901 37058 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00152 2721 3522 ANT3-DPRIME 0/0 97.9 99.9 MEG_975 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00093 11224 13076 ASMA 0/0 100.0 97.5 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00004 65835 66656 BACA 0/0 100.0 99.9 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00095 10772 11494 BAER 0/0 100.0 99.6 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00095 9372 10775 BAES 0/0 100.0 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00005 30518 31216 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00005 31213 32586 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00074 14885 15517 CRP 0/0 100.0 99.7 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00239 61 987 CTX 0/0 98.3 98.2 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00152 1826 2323 DFRA 0/0 100.0 100.0 MEG_2551 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00082 14502 15674 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00082 15691 17229 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00133 7141 8331 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00043 1067 2230 EMRK 0/0 100.0 99.7 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00082 13845 14375 EMRR 0/0 100.0 99.8 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00134 422 2065 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00199 263 1026 ERMB 2/2 100.0 99.0 MEG_2801 Drugs:MLS:23S_rRNA_methyltransferases:ERMB NA
contig00043 3265 6858 EVGS 0/0 100.0 99.4 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00046 1586 2314 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00046 394 1218 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00065 22020 22433 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00054 8962 9639 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00127 6400 6789 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00127 5952 6386 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00017 30174 31406 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00095 512 1759 MDTA 0/0 100.0 97.9 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00095 1759 4881 MDTB 0/0 100.0 99.2 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00095 4882 7959 MDTC 0/0 100.0 99.0 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00046 5815 6972 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00046 2677 5790 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00030 16606 17832 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00030 26461 27669 MDTH 0/0 100.0 100.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00048 1757 2086 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00048 2073 2438 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00019 24050 25423 MDTK 0/0 100.0 98.8 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00069 262 1473 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00024 20208 21239 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00024 21239 23290 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00024 23287 24753 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00113 7732 8208 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00023 19048 20796 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00136 3245 5146 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00068 19827 21131 PBP4B 0/0 100.0 100.0 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00001 41659 42627 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00015 19983 20852 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00024 46370 46693 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00152 4026 4993 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00186 850 2055 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00084 16770 18413 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID018at24
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00028 43 903 aac(3)-IIa_1 0/0 100 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig00089 1540 2139 aac(6’)-Ib-cr_1 0/0 100 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00081 843 1646 aph(3’’)-Ib_5 0/0 100 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00081 7 843 aph(6)-Id_1 0/0 100 100.0 M28829 aph(6)-Id Streptomycin
contig00064 2636 3511 blaCTX-M-15_1 0/0 100 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00089 579 1409 blaOXA-1_1 0/0 100 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00093 534 1394 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00073 33 506 dfrA17_1 0/0 100 100.0 FJ460238 dfrA17 Trimethoprim
contig00008 16349 17581 mdf(A)_1 0/0 100 97.9 Y08743 mdf(A)
contig00099 68 989 mph(A)_2 1/1 100 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00081 1707 2522 sul2_3 0/0 100 100.0 HQ840942 sul2 Sulfamethoxazole
contig00080 770 1975 tet(B)_2 0/0 100 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00028 43 903 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00089 1540 2139 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00024 932 4081 acrB 0/0 100.0 98.8 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00019 28484 31597 acrD 0/0 100.0 98.5 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00010 127224 128381 acrE 0/0 100.0 98.7 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00010 128393 131497 acrF 0/0 100.0 96.5 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00010 126163 126825 acrS 0/0 100.0 98.3 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00081 843 1646 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00081 7 843 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00004 65932 66753 bacA 0/0 100.0 100.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00023 10384 11105 baeR 0/0 99.9 96.7 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00023 11102 12505 baeS 0/0 100.0 90.6 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00014 107883 109250 cpxA 0/0 99.6 98.6 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00005 15383 16015 CRP 0/0 100.0 99.0 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00064 2636 3511 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00073 33 506 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00030 60820 61992 emrA 0/0 100.0 98.1 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00030 62009 63547 emrB 0/0 100.0 98.1 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00017 65261 66316 emrK 0/0 100.0 97.3 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00030 60163 60693 emrR 0/0 100.0 98.5 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00017 63723 65261 emrY 0/0 100.0 97.7 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00022 42665 44308 eptA 0/0 100.0 91.1 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00024 4104 5297 Escherichia_coli_acrA 0/0 100.0 99.2 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00009 123964 125097 Escherichia_coli_ampC 0/0 100.0 98.0 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00025 22923 24080 Escherichia_coli_ampH 0/0 100.0 97.2 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00028 62521 62853 Escherichia_coli_emrE 0/0 100.0 92.2 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00008 16349 17581 Escherichia_coli_mdfA 0/0 100.0 96.3 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00017 66840 67454 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00017 67459 71052 evgS 0/0 100.0 99.4 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00005 194273 195001 gadW 0/0 100.0 99.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00005 195370 196194 gadX 0/0 100.0 93.8 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00020 1686 2099 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00012 68376 69048 kdpE 0/0 99.3 95.8 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00043 8994 9377 marA 0/0 100.0 98.4 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00023 20118 21365 mdtA 0/0 100.0 95.8 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00023 16996 20118 mdtB 0/0 100.0 95.9 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00023 13918 16995 mdtC 0/0 100.0 93.9 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00005 189615 190772 mdtE 0/0 100.0 98.5 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00005 190797 193910 mdtF 0/0 100.0 97.3 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00011 69746 70972 mdtG 0/0 100.0 98.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00011 59907 61115 mdtH 0/0 100.0 98.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00022 12407 13438 mdtN 0/0 100.0 94.9 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00022 10356 12407 mdtO 0/0 100.0 97.1 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00022 8893 10359 mdtP 0/0 100.0 97.7 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00099 68 973 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00008 95721 97469 msbA 0/0 100.0 98.1 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00089 579 1409 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00003 185233 186201 pmrF 0/0 100.0 97.7 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00081 1707 2522 sul2 0/0 100.0 99.6 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00093 534 1394 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00080 770 1975 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00004 89131 90618 tolC 0/0 100.0 100.0 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00023 75746 76912 ugd 0/0 100.0 97.0 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00003 125058 126701 yojI 0/0 100.0 97.9 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00028 43 903 (AGly)aac3-IIa 0/0 100 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig00081 843 1646 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00081 7 843 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00009 123964 125097 (Bla)AmpC2_Ecoli 0/0 100 98.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00025 22923 24080 (Bla)ampH_Ecoli 0/0 100 97.2 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00064 2636 3511 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00089 579 1409 (Bla)blaOXA-1 0/0 100 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00093 534 1394 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00012 122036 123937 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.5 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00099 68 973 (MLS)mph(A) 0/0 100 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00081 1707 2522 (Sul)sul2 0/0 100 99.6 EU360945:1617-2432 (Sul)sul2 NA
contig00080 770 1975 (Tet)tetB 0/0 100 99.7 AB089594:1-1206 (Tet)tetB NA
contig00073 33 506 (Tmt)dfrA17 0/0 100 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00028 43 903 aac(3)-IIe 0/0 100 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig00089 1540 2094 aac(6’)-Ib-D181Y 0/0 100 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00081 843 1670 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00081 7 843 aph(6)-Id 0/0 100 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00064 2636 3511 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00009 123964 125097 blaEC-5 0/0 100 99.8 NG_049085.1 cephalosporin-hydrolyzing class C beta-lactamase EC-5 CEPHALOSPORIN
contig00089 579 1409 blaOXA-1 0/0 100 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00093 534 1394 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00073 33 506 dfrA17 0/0 100 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00099 68 989 mph(A) 1/1 100 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00081 1707 2522 sul2 0/0 100 99.9 NG_048118.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00080 770 1975 tet(B) 0/0 100 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00028 43 903 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00024 4104 5297 ACRA 0/0 100.0 99.2 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00024 932 4081 ACRB 0/0 100.0 98.8 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00019 28484 31597 ACRD 0/0 100.0 98.5 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00010 127224 128381 ACRE 0/0 100.0 98.7 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00010 128393 131497 ACRF 0/0 100.0 96.5 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00010 126163 126825 ACRS 0/0 100.0 98.3 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00025 22923 24080 AMPH 0/0 100.0 97.2 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00081 843 1670 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00081 7 843 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00023 33028 34880 ASMA 0/0 100.0 97.5 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00004 65932 66753 BACA 0/0 100.0 100.0 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00023 10384 11105 BAER 0/0 99.9 96.7 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00023 11102 12505 BAES 0/0 100.0 90.6 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00003 100400 101590 BCR 0/0 100.0 96.3 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00009 123964 125097 BLAEC 0/0 100.0 99.8 MEG_1275 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00014 107188 107886 CPXAR 0/0 100.0 97.8 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00014 107883 109250 CPXAR 0/0 99.6 99.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00005 15383 16015 CRP 0/0 100.0 99.0 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00073 33 506 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00030 60820 61992 EMRA 0/0 100.0 98.1 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00030 62009 63547 EMRB 0/0 100.0 98.1 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00002 201125 202315 EMRD 0/0 100.0 97.7 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00017 65261 66424 EMRK 0/0 100.0 97.2 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00030 60163 60693 EMRR 0/0 100.0 98.5 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00017 63723 65261 EMRY 0/0 100.0 97.8 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00022 42665 44308 EPTA 0/0 100.0 91.1 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00017 67459 71052 EVGS 0/0 100.0 99.4 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00005 194273 195001 GADW 0/0 100.0 99.7 MEG_3082 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00005 195370 196194 GADX 0/0 100.0 93.8 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00020 1686 2099 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00012 68376 69048 KDPE 0/0 99.3 95.8 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00043 8994 9383 MARA 0/0 100.0 98.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00043 9398 9832 MARR 0/0 100.0 98.2 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00008 16349 17581 MDFA 0/0 100.0 98.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00023 20118 21365 MDTA 0/0 100.0 95.8 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00023 16996 20118 MDTB 0/0 100.0 95.9 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00023 13918 16995 MDTC 0/0 100.0 93.9 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00005 189615 190772 MDTE 0/0 100.0 98.5 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00005 190797 193910 MDTF 0/0 100.0 97.3 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00011 69746 70972 MDTG 0/0 100.0 98.5 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00011 59907 61115 MDTH 0/0 100.0 98.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00006 136641 136970 MDTI 0/0 100.0 98.8 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00006 136289 136654 MDTJ 0/0 100.0 97.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00006 54354 55726 MDTK 0/0 99.9 98.4 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00022 12407 13438 MDTN 0/0 100.0 94.9 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00022 10356 12407 MDTO 0/0 100.0 97.1 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00022 8893 10359 MDTP 0/0 100.0 97.7 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00099 68 989 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00008 95721 97469 MSBA 0/0 100.0 98.1 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00028 62521 62853 MVRC 0/0 100.0 92.2 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00089 579 1409 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00012 122036 123937 PBP2 0/0 100.0 98.5 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00003 185233 186201 PMRF 0/0 100.0 97.7 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00013 41062 41931 ROBA 0/0 100.0 97.2 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00032 19176 19498 SOXS 0/0 99.7 98.1 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00081 1707 2522 SULII 0/0 100.0 100.0 MEG_6618 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00093 516 1761 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00080 770 1975 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00080 2769 3185 TETD 0/0 100.0 100.0 MEG_7070 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETD NA
contig00023 75746 76912 UGD 0/0 100.0 97.0 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00003 125058 126701 YOGI 0/0 100.0 97.9 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID020at24
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00092 4914 5774 aac(3)-IId_1 0/0 100.0 99.9 EU022314 aac(3)-IId Gentamicin, Tobramycin
contig00002 187467 188342 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00124 88 729 catA2_1 0/0 100.0 96.1 X53796 catA2 Chloramphenicol
contig00036 1689 2162 dfrA1_8 0/0 100.0 100.0 X00926 dfrA1 Trimethoprim
contig00128 614 1111 dfrA12_8 0/0 100.0 100.0 AM040708 dfrA12 Trimethoprim
contig00001 101828 103060 mdf(A)_1 0/0 100.0 99.9 Y08743 mdf(A)
contig00130 68 989 mph(A)_2 1/1 100.0 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00091 414 1280 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00094 2246 3037 sul3_2 0/0 100.0 100.0 AJ459418 sul3 Sulfamethoxazole
contig00101 2337 3583 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
contig00126 158 1425 tet(K)_1 0/0 91.9 100.0 U38656 tet(K) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00092 4914 5774 AAC(3)-IId 0/0 100.0 99.9 EU022314.1:0-861 AAC(3)-IId is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00011 41403 44552 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00017 22104 25217 acrD 0/0 100.0 99.3 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00047 8641 9798 acrE 0/0 100.0 99.9 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00047 5525 8629 acrF 0/0 100.0 100.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00047 10197 10859 acrS 0/0 100.0 100.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00005 89700 90521 bacA 0/0 100.0 100.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00046 31115 31837 baeR 0/0 100.0 99.3 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00046 29715 31118 baeS 0/0 100.0 98.7 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00124 88 729 catII_from_Escherichia_coli_K-12 0/0 100.0 96.1 X53796.1:186-828 catII is a chloramphenicol acetyltransferase. This particular catII is found in E.coli K-12. Confers resistance to chloramphenicol. phenicol
contig00021 61537 62910 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00006 15387 16019 CRP 0/0 100.0 99.7 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00002 187467 188342 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00036 1689 2162 dfrA1 0/0 100.0 99.8 KJ541681.1:19526-20000 dfrA1 is an integron-encoded dihydrofolate reductase diaminopyrimidine
contig00128 614 1111 dfrA12 0/0 100.0 100.0 GU585907.1:22103-21605 dfrA12 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00088 427 1599 emrA 0/0 100.0 99.9 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00088 1616 3154 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00010 108528 109583 emrK 0/0 100.0 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00010 106990 108528 emrY 0/0 100.0 99.9 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00004 178263 179906 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00011 40187 41380 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00004 134908 136041 Escherichia_coli_ampC 0/0 100.0 100.0 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00017 56548 57852 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.7 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00033 27471 28628 Escherichia_coli_ampH 0/0 100.0 99.9 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00001 101828 103060 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00041 377 991 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00041 996 4589 evgS 0/0 100.0 100.0 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00038 2242 2970 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00038 1051 1875 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00053 23647 24060 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00020 8002 8679 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00044 28957 29340 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00046 20855 22102 mdtA 0/0 100.0 98.0 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00046 22102 25224 mdtB 0/0 100.0 97.0 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00046 25225 28302 mdtC 0/0 100.0 97.7 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00038 6471 7628 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00038 3333 6446 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00019 17779 19005 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00019 27634 28842 mdtH 0/0 100.0 100.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00014 28251 29483 mdtM 0/0 100.0 96.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00012 10896 11927 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00012 11927 13978 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00012 13975 15441 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00130 68 973 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00017 944 1420 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00001 184776 186524 msbA 0/0 100.0 99.9 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00010 8072 9040 pmrF 0/0 100.0 99.9 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00094 734 1066 qacH 0/0 100.0 91.6 DQ149925.1:188-521 qacH is a subunit of the qac multidrug efflux pump in Vibrio cholerae fluoroquinolone
contig00036 2257 2781 SAT-1 0/0 100.0 100.0 AB211124:0-525 SAT-2 is a plasmid-mediated streptothricin acetyltransferase which confers resistance to streptothricin a nucleoside antibiotic. Originally described from an E. coli plasmid sequence by Heim et al. 1989. nucleoside
contig00091 441 1280 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00094 2246 3037 sul3 0/0 100.0 100.0 FJ196385:9323-8531 Sul3 is a sulfonamide resistant dihydropteroate synthase similar to Sul1 and Sul2. Its resistance gene was found encoded in E. coli plasmid DNA of sulfonamide resistant isolates. sulfonamide
contig00101 2337 3583 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00126 158 1425 tet(K) 0/0 91.9 100.0 S67449.1:0-1380 TetK is a tetracycline efflux protein found in both Gram-negative (Haemophilus and Gallibacterium) and Gram-positive (many species including mycobacteria) bacteria. tetracycline
contig00005 65835 67322 tolC 0/0 100.0 100.0 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00025 50862 52505 yojI 0/0 100.0 99.9 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00092 4914 5774 (AGly)aac3-IId 0/0 100.0 99.9 EU022314:1-861 (AGly)aac3-IId NA
contig00036 2828 3627 (AGly)aadA1-pm 1/3 96.3 99.5 JQ690540:7968-8798 (AGly)aadA1-pm NA
contig00036 2257 2781 (AGly)sat-2A 0/0 100.0 100.0 X51546:518-1042 (AGly)sat-2A NA
contig00017 56548 57852 (Bla)AmpC1_Ecoli 0/0 100.0 98.7 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00004 134908 136041 (Bla)AmpC2_Ecoli 0/0 100.0 100.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00033 27471 28628 (Bla)ampH_Ecoli 0/0 100.0 99.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00002 187467 188342 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00020 60089 61990 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00130 68 973 (MLS)mph(A) 0/0 100.0 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00124 88 729 (Phe)catA2 0/0 100.0 96.1 X53796:187-903 (Phe)catA2 NA
contig00091 441 1280 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00094 2246 3037 (Sul)sul3 0/0 100.0 100.0 HQ875016:7396-8187 (Sul)sul3 NA
contig00101 2309 3583 (Tet)tetA 0/0 100.0 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00126 158 1425 (Tet)tetK 0/0 91.9 100.0 M16217:305-1684 (Tet)tetK NA
contig00101 3614 4264 (Tet)tetR 0/0 100.0 99.8 HF545434:53576-54226 (Tet)tetR NA
contig00036 1689 2162 (Tmt)dfrA1 0/0 100.0 100.0 JQ794607:474 (Tmt)dfrA1 NA
contig00128 614 1111 (Tmt)dfrA12 0/0 100.0 100.0 Z21672:310-807 (Tmt)dfrA12 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00092 4914 5774 aac(3)-IId 0/0 100.0 100.0 NG_047251.1 aminoglycoside N-acetyltransferase AAC(3)-IId GENTAMICIN
contig00036 2839 3627 aadA1 0/0 100.0 100.0 NG_047327.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA1 STREPTOMYCIN
contig00002 187467 188342 blaCTX-M-15 0/0 100.0 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00004 134908 136041 blaEC 0/0 100.0 100.0 NG_047494.1 BlaEC family class C beta-lactamase BETA-LACTAM
contig00124 88 729 catA2 0/0 100.0 100.0 NG_047596.1 type A-2 chloramphenicol O-acetyltransferase CatII CHLORAMPHENICOL
contig00036 1689 2162 dfrA1 0/0 100.0 100.0 NG_047676.1 trimethoprim-resistant dihydrofolate reductase DfrA1 TRIMETHOPRIM
contig00128 614 1111 dfrA12 0/0 100.0 100.0 NG_047689.1 trimethoprim-resistant dihydrofolate reductase DfrA12 TRIMETHOPRIM
contig00130 68 989 mph(A) 1/1 100.0 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00036 2257 2781 sat2_gen 0/0 100.0 100.0 NG_048068.1 streptothricin N-acetyltransferase Sat2 STREPTOTHRICIN
contig00091 441 1280 sul1 0/0 100.0 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00094 2246 3037 sul3 0/0 100.0 100.0 NG_048120.1 sulfonamide-resistant dihydropteroate synthase Sul3 SULFONAMIDE
contig00101 2309 3508 tet(A) 0/0 100.0 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
contig00126 158 1425 tet(K) 0/0 91.9 100.0 NG_048200.1 tetracycline efflux MFS transporter Tet(K) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00092 4914 5774 AAC3 0/0 100.0 100.0 MEG_64 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00011 40187 41380 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00011 41403 44552 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00017 22104 25217 ACRD 0/0 100.0 99.3 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00047 8641 9798 ACRE 0/0 100.0 99.9 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00047 5525 8629 ACRF 0/0 100.0 100.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00047 10197 10859 ACRS 0/0 100.0 100.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00004 134908 136041 AMPC 0/0 100.0 100.0 MEG_728 Drugs:betalactams:Class_C_betalactamases:AMPC NA
contig00033 27471 28628 AMPH 0/0 100.0 99.9 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00036 2828 3627 ANT3-DPRIME 1/3 96.3 99.5 MEG_915 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00046 6739 8591 ASMA 0/0 100.0 97.2 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00005 89700 90521 BACA 0/0 100.0 100.0 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00046 31115 31837 BAER 0/0 100.0 99.3 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00046 29715 31118 BAES 0/0 100.0 98.7 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00015 67340 68530 BCR 0/0 100.0 100.0 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00124 88 729 CATA 0/0 100.0 100.0 MEG_1568 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig00021 60842 61540 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00021 61537 62910 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00006 15387 16019 CRP 0/0 100.0 99.7 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00090 3505 4447 CTX 0/0 100.0 98.1 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00112 334 1222 CTX 0/0 100.0 95.4 MEG_2430 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00036 1689 2162 DFRA 0/0 100.0 99.8 MEG_2495 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00128 614 1111 DFRA 0/0 100.0 100.0 MEG_2551 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00088 427 1599 EMRA 0/0 100.0 99.9 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00088 1616 3154 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00008 87250 88440 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00010 108528 109686 EMRK 0/0 99.6 99.9 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00010 106990 108528 EMRY 0/0 100.0 99.9 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00004 178263 179906 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00041 996 4589 EVGS 0/0 100.0 100.0 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00038 2242 2970 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00038 1051 1875 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00053 23647 24060 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00020 8002 8679 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00044 28951 29340 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00044 28503 28937 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00001 101828 103060 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00046 20855 22102 MDTA 0/0 100.0 98.0 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00046 22102 25224 MDTB 0/0 100.0 97.0 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00046 25225 28302 MDTC 0/0 100.0 97.7 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00038 6471 7628 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00038 3333 6446 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00019 17779 19005 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00019 27634 28842 MDTH 0/0 100.0 100.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00042 632 961 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00042 948 1313 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00009 76121 77494 MDTK 0/0 100.0 100.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00014 28251 29483 MDTM 0/0 100.0 96.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00012 10896 11927 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00012 11927 13978 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00012 13975 15441 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00130 68 989 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00017 944 1420 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00001 184776 186524 MSBA 0/0 100.0 99.9 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00020 60089 61990 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00017 56548 57852 PBP4B 0/0 100.0 98.7 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00010 8072 9040 PMRF 0/0 100.0 99.9 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00094 734 1066 QACL 0/0 100.0 100.0 MEG_5852 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:QACL NA
contig00003 175115 175984 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00012 37058 37381 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00091 440 1407 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00094 2246 3037 SULIII 0/0 100.0 100.0 MEG_6639 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULIII NA
contig00101 2309 3583 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00126 158 1425 TETK 0/0 91.9 100.0 MEG_7089 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETK NA
contig00025 50862 52505 YOGI 0/0 100.0 99.9 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID021at24
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00094 1392 2180 aadA5_1 0/0 100 100.0 AF137361 aadA5 Streptomycin
contig00078 498 1373 blaCTX-M-15_1 0/0 100 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00094 788 1261 dfrA17_1 0/0 100 100.0 FJ460238 dfrA17 Trimethoprim
contig00002 154454 155686 mdf(A)_1 0/0 100 98.3 Y08743 mdf(A)
contig00094 8861 9782 mph(A)_2 1/1 100 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00078 6014 6670 qnrS1_1 0/0 100 100.0 AB187515 qnrS1 Ciprofloxacin
contig00094 2700 3566 sul1_5 0/0 100 99.9 EU780013 sul1 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00094 1392 2180 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00001 103356 106505 acrB 0/0 100.0 99.5 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00006 71682 74795 acrD 0/0 100.0 98.9 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00058 8406 9563 acrE 0/0 100.0 99.0 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00058 5290 8394 acrF 0/0 100.0 99.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00058 9962 10624 acrS 0/0 100.0 98.9 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00019 28559 29380 bacA 0/0 100.0 99.9 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00002 50563 51285 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00002 49163 50566 baeS 0/0 100.0 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00035 37431 38804 cpxA 0/0 100.0 98.7 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00005 15464 16096 CRP 0/0 100.0 99.8 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00078 498 1373 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00094 788 1261 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00003 27410 28582 emrA 0/0 100.0 99.9 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00003 28599 30137 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00046 8783 9838 emrK 0/0 100.0 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00003 26753 27283 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00046 7245 8783 emrY 0/0 100.0 98.9 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00013 76745 78388 eptA 0/0 100.0 99.3 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00001 106528 107721 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00013 33384 34517 Escherichia_coli_ampC 0/0 100.0 97.6 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00006 106194 107498 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 96.9 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00001 17240 18397 Escherichia_coli_ampH 0/0 100.0 98.9 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00002 154454 155686 Escherichia_coli_mdfA 0/0 100.0 96.8 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00046 10362 10976 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00046 10981 14574 evgS 0/0 100.0 100.0 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00042 1784 2512 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00042 592 1416 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00025 5169 5582 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00007 23675 24352 kdpE 0/0 100.0 99.7 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00054 31308 31691 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00002 40303 41550 mdtA 0/0 100.0 99.9 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00002 41550 44672 mdtB 0/0 100.0 99.8 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00002 44673 47750 mdtC 0/0 100.0 99.8 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00042 6013 7170 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00042 2875 5988 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00004 124760 125986 mdtG 0/0 100.0 99.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00004 114922 116130 mdtH 0/0 100.0 97.9 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00061 6012 7244 mdtM 0/0 100.0 96.3 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00055 1 2040 mdtO 0/0 99.4 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00055 2037 3503 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00094 8877 9782 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00006 50468 50944 mphB 0/0 100.0 98.1 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00011 81416 83164 msbA 0/0 100.0 99.9 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00080 1339 2307 pmrF 0/0 100.0 99.8 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00078 6014 6670 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00094 2727 3566 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00087 5852 7339 tolC 0/0 100.0 100.0 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00023 56976 58619 yojI 0/0 100.0 99.3 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00094 1392 2180 (AGly)aadA5 0/0 100 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00006 106194 107498 (Bla)AmpC1_Ecoli 0/0 100 96.9 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00013 33384 34517 (Bla)AmpC2_Ecoli 0/0 100 97.6 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00001 17240 18397 (Bla)ampH_Ecoli 0/0 100 98.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00078 498 1373 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00007 76088 77989 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 99.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00078 6014 6670 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00094 8877 9782 (MLS)mph(A) 0/0 100 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00094 2727 3566 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00094 788 1261 (Tmt)dfrA17 0/0 100 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00094 1392 2180 aadA5 0/0 100 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00078 498 1373 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00013 33384 34517 blaEC-18 0/0 100 99.1 NG_049083.1 class C extended-spectrum beta-lactamase EC-18 CEPHALOSPORIN
contig00094 788 1261 dfrA17 0/0 100 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00094 8861 9782 mph(A) 1/1 100 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00078 6014 6670 qnrS1 0/0 100 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig00094 2727 3566 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00001 106528 107721 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00001 103356 106505 ACRB 0/0 100.0 99.5 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00006 71682 74795 ACRD 0/0 100.0 98.9 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00058 8406 9563 ACRE 0/0 100.0 99.0 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00058 5290 8394 ACRF 0/0 100.0 99.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00058 9962 10624 ACRS 0/0 100.0 98.9 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00001 17240 18397 AMPH 0/0 100.0 98.9 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00094 1392 2180 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00002 26048 27900 ASMA 0/0 100.0 98.5 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00019 28559 29380 BACA 0/0 100.0 99.9 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00002 50563 51285 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00002 49163 50566 BAES 0/0 100.0 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00039 19164 20354 BCR 0/0 100.0 100.0 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00013 33384 34517 BLAEC 0/0 100.0 99.1 MEG_1279 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00035 36736 37434 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00035 37431 38804 CPXAR 0/0 100.0 99.4 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00005 15464 16096 CRP 0/0 100.0 99.8 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00094 788 1261 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00003 27410 28582 EMRA 0/0 100.0 99.9 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00003 28599 30137 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00016 28895 30085 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00046 8783 9946 EMRK 0/0 100.0 99.9 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00003 26753 27283 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00046 7245 8783 EMRY 0/0 100.0 99.0 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00013 76745 78388 EPTA 0/0 100.0 99.3 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00046 10981 14574 EVGS 0/0 100.0 100.0 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00042 1784 2512 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00042 592 1416 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00025 5169 5582 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00007 23675 24352 KDPE 0/0 100.0 99.7 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00054 31302 31691 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00054 30854 31288 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00002 154454 155686 MDFA 0/0 100.0 98.4 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00002 40303 41550 MDTA 0/0 100.0 99.9 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00002 41550 44672 MDTB 0/0 100.0 99.8 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00002 44673 47750 MDTC 0/0 100.0 99.8 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00042 6013 7170 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00042 2875 5988 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00004 124760 125986 MDTG 0/0 100.0 99.9 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00004 114922 116130 MDTH 0/0 100.0 97.9 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00010 80532 80861 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00010 80180 80545 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00010 8883 10256 MDTK 0/0 100.0 98.8 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00061 6012 7244 MDTM 0/0 100.0 96.3 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00055 1 2040 MDTO 0/0 99.4 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00055 2037 3503 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00094 8861 9782 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00006 50468 50944 MPHB 0/0 100.0 98.1 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00011 81416 83164 MSBA 0/0 100.0 99.9 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00007 76088 77989 PBP2 0/0 100.0 99.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00006 106194 107498 PBP4B 0/0 100.0 96.9 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00080 1339 2307 PMRF 0/0 100.0 99.8 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00078 6014 6670 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00044 21726 22595 ROBA 0/0 100.0 98.8 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00055 25459 25781 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00094 2726 3693 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00023 56976 58619 YOGI 0/0 100.0 99.3 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID025III
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00114 1172 1973 aadA2_1 0/0 97.9 99.9 NC_010870 aadA2 Streptomycin
contig02536 13 816 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00117 2038 2838 blaCTX-M-156_1 0/0 91.4 100.0 KM211509 blaCTX-M-156 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00114 2371 2868 dfrA12_8 0/0 100.0 100.0 AM040708 dfrA12 Trimethoprim
contig01746 253 1013 erm(B)_18 2/2 99.6 99.0 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig00055 865 2097 mdf(A)_1 0/0 100.0 99.9 Y08743 mdf(A)
contig01661 68 998 mph(A)_2 2/10 100.0 98.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00962 11 826 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00114 1172 1951 aadA2 0/0 100.0 99.9 AF156486:5012-5792 aadA2 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in K. pneumoniae Salmonella spp. Corynebacterium glutamicum C. freundii and Aeromonas spp. aminoglycoside
contig00367 1254 1916 acrS 0/0 100.0 100.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig02536 13 816 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00117 2038 2838 CTX-M-15 0/0 91.4 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00114 2371 2868 dfrA12 0/0 100.0 100.0 GU585907.1:22103-21605 dfrA12 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00254 1 1481 eptA 0/0 90.1 100.0 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig01746 279 1013 ErmB 0/0 98.4 99.3 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig00232 144 1277 Escherichia_coli_ampC 0/0 100.0 100.0 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00055 865 2097 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig01603 277 954 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig02480 237 566 Klebsiella_pneumoniae_KpnF 0/0 100.0 100.0 AP006725.1:2484238-2484568 KpnF subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan. aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline
contig00796 225 1455 mdtA 0/0 98.6 97.9 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00549 519 1697 mdtG 0/0 96.1 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00148 918 2384 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig01661 68 970 mphA 0/0 99.7 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00802 918 1394 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00962 11 826 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00114 1172 1951 (AGly)aadA2 0/0 100.0 99.9 X68227:66-945 (AGly)aadA2 NA
contig02536 13 816 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00232 144 1277 (Bla)AmpC2_Ecoli 0/0 100.0 100.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00117 2038 2838 (Bla)blaCTX-M-15 0/0 91.4 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig01746 279 1013 (MLS)erm(B) 0/0 99.6 99.6 M11180:714-1451 (MLS)erm(B) NA
contig01661 68 970 (MLS)mph(A) 0/0 99.7 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00962 11 826 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00114 2371 2868 (Tmt)dfrA12 0/0 100.0 100.0 Z21672:310-807 (Tmt)dfrA12 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00114 1172 1963 aadA2 0/0 100.0 100.0 NG_047343.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA2 STREPTOMYCIN
contig02536 13 822 aph(3’’)-Ib 0/0 97.8 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00117 2038 2838 blaCTX-M-15 0/0 91.4 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00232 144 1277 blaEC 0/0 100.0 100.0 NG_047494.1 BlaEC family class C beta-lactamase BETA-LACTAM
contig00114 2371 2868 dfrA12 0/0 100.0 100.0 NG_047689.1 trimethoprim-resistant dihydrofolate reductase DfrA12 TRIMETHOPRIM
contig01746 279 1013 erm(B) 0/0 99.6 99.9 NG_047804.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) MACROLIDE
contig01661 68 998 mph(A) 2/10 100.0 98.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00962 11 826 sul2 0/0 100.0 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00367 1254 1916 ACRS 0/0 100.0 100.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00232 144 1277 AMPC 0/0 100.0 100.0 MEG_728 Drugs:betalactams:Class_C_betalactamases:AMPC NA
contig00114 1172 1973 ANT3-DPRIME 0/0 97.9 99.9 MEG_975 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig02536 13 822 APH3-DPRIME 0/0 97.8 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00482 1 1665 ASMA 0/0 91.3 99.1 MEG_1179 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig03658 1 636 CPXAR 0/0 91.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00114 2371 2868 DFRA 0/0 100.0 100.0 MEG_2551 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00254 1 1481 EPTA 0/0 90.1 100.0 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig01746 253 1013 ERMB 2/2 99.6 99.0 MEG_2801 Drugs:MLS:23S_rRNA_methyltransferases:ERMB NA
contig01603 277 954 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig02480 237 566 KPNF 0/0 100.0 100.0 MEG_3515 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:KPNF NA
contig00055 865 2097 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00796 225 1455 MDTA 0/0 98.6 97.9 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00549 519 1697 MDTG 0/0 96.1 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00148 918 2384 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig01661 68 998 MPHA 2/10 100.0 98.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00802 918 1394 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00332 36 359 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00962 11 826 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
ID025II
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00089 2721 3522 aadA2_1 0/0 97.9 99.9 NC_010870 aadA2 Streptomycin
contig00009 91518 92393 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00089 1826 2323 dfrA12_8 0/0 100.0 100.0 AM040708 dfrA12 Trimethoprim
contig00125 263 1026 erm(B)_18 2/2 100.0 99.0 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig00008 30310 31542 mdf(A)_1 0/0 100.0 99.9 Y08743 mdf(A)
contig00089 10161 11091 mph(A)_2 2/10 100.0 98.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00089 4000 4866 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00118 850 2055 tet(B)_2 0/0 100.0 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00089 2743 3522 aadA2 0/0 100.0 99.9 AF156486:5012-5792 aadA2 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in K. pneumoniae Salmonella spp. Corynebacterium glutamicum C. freundii and Aeromonas spp. aminoglycoside
contig00007 99712 102861 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00027 52378 55491 acrD 0/0 100.0 100.0 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00062 21524 22681 acrE 0/0 100.0 99.9 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00062 20463 21125 acrS 0/0 100.0 100.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00006 89049 89870 bacA 0/0 100.0 99.9 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00053 29821 30543 baeR 0/0 100.0 99.6 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00053 28421 29824 baeS 0/0 100.0 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00005 61439 62812 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00003 15201 15833 CRP 0/0 100.0 99.7 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00009 91518 92393 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00089 1826 2323 dfrA12 0/0 100.0 100.0 GU585907.1:22103-21605 dfrA12 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00069 11909 13081 emrA 0/0 100.0 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00069 13098 14636 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00020 1067 2122 emrK 0/0 100.0 99.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00069 11252 11782 emrR 0/0 100.0 99.8 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00016 46590 48233 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00125 289 1034 ErmB 1/1 99.9 99.2 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig00007 98496 99689 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00017 13415 14548 Escherichia_coli_ampC 0/0 100.0 100.0 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00020 65523 66827 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 100.0 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00012 64067 65224 Escherichia_coli_ampH 0/0 100.0 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00008 30310 31542 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00020 2646 3260 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00020 3265 6858 evgS 0/0 100.0 99.4 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00042 2699 3427 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00042 1507 2331 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00059 24863 25276 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00024 8065 8742 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00053 19561 20808 mdtA 0/0 100.0 97.9 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00053 20808 23930 mdtB 0/0 100.0 99.2 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00053 23931 27008 mdtC 0/0 100.0 99.0 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00042 6928 8085 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00042 3790 6903 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00038 16626 17852 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00038 26481 27689 mdtH 0/0 100.0 100.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00061 473 1684 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00016 16021 17052 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00016 13970 16021 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00016 12507 13973 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00089 10189 11091 mphA 0/0 99.7 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00027 31216 31692 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00002 51374 53122 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00001 136290 137258 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00089 4027 4866 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00118 850 2055 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00006 65184 66671 tolC 0/0 100.0 100.0 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00001 76187 77830 yojI 0/0 100.0 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00089 2743 3522 (AGly)aadA2 0/0 100.0 99.9 X68227:66-945 (AGly)aadA2 NA
contig00020 65523 66827 (Bla)AmpC1_Ecoli 0/0 100.0 100.0 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00017 13415 14548 (Bla)AmpC2_Ecoli 0/0 100.0 100.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00012 64067 65224 (Bla)ampH_Ecoli 0/0 100.0 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00009 91518 92393 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00024 60152 62053 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00125 289 1026 (MLS)erm(B) 0/0 100.0 99.6 M11180:714-1451 (MLS)erm(B) NA
contig00089 10189 11091 (MLS)mph(A) 0/0 99.7 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00089 4027 4866 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00118 850 2055 (Tet)tetB 0/0 100.0 99.7 AB089594:1-1206 (Tet)tetB NA
contig00089 1826 2323 (Tmt)dfrA12 0/0 100.0 100.0 Z21672:310-807 (Tmt)dfrA12 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00089 2731 3522 aadA2 0/0 100 100.0 NG_047343.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA2 STREPTOMYCIN
contig00009 91518 92393 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00017 13415 14548 blaEC 0/0 100 100.0 NG_047494.1 BlaEC family class C beta-lactamase BETA-LACTAM
contig00089 1826 2323 dfrA12 0/0 100 100.0 NG_047689.1 trimethoprim-resistant dihydrofolate reductase DfrA12 TRIMETHOPRIM
contig00125 289 1026 erm(B) 0/0 100 99.9 NG_047804.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) MACROLIDE
contig00089 10161 11091 mph(A) 2/10 100 98.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00089 4027 4866 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00118 850 2055 tet(B) 0/0 100 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00007 98496 99689 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00007 99712 102861 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00027 52378 55491 ACRD 0/0 100.0 100.0 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00062 21524 22681 ACRE 0/0 100.0 99.9 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00062 20463 21125 ACRS 0/0 100.0 100.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00017 13415 14548 AMPC 0/0 100.0 100.0 MEG_728 Drugs:betalactams:Class_C_betalactamases:AMPC NA
contig00012 64067 65224 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00089 2721 3522 ANT3-DPRIME 0/0 97.9 99.9 MEG_975 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00053 5770 7622 ASMA 0/0 100.0 97.5 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00006 89049 89870 BACA 0/0 100.0 99.9 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00053 29821 30543 BAER 0/0 100.0 99.6 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00053 28421 29824 BAES 0/0 100.0 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00001 49210 50400 BCR 0/0 100.0 99.9 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00005 60744 61442 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00005 61439 62812 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00003 15201 15833 CRP 0/0 100.0 99.7 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00146 62 1004 CTX 0/0 100.0 98.2 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00089 1826 2323 DFRA 0/0 100.0 100.0 MEG_2551 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00069 11909 13081 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00069 13098 14636 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00004 87171 88361 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00020 1067 2230 EMRK 0/0 100.0 99.7 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00069 11252 11782 EMRR 0/0 100.0 99.8 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00016 46590 48233 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00125 263 1026 ERMB 2/2 100.0 99.0 MEG_2801 Drugs:MLS:23S_rRNA_methyltransferases:ERMB NA
contig00020 3265 6858 EVGS 0/0 100.0 99.4 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00042 2699 3427 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00042 1507 2331 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00059 24863 25276 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00024 8065 8742 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00056 30890 31324 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00008 30310 31542 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00053 19561 20808 MDTA 0/0 100.0 97.9 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00053 20808 23930 MDTB 0/0 100.0 99.2 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00053 23931 27008 MDTC 0/0 100.0 99.0 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00042 6928 8085 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00042 3790 6903 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00038 16626 17852 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00038 26481 27689 MDTH 0/0 100.0 100.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00050 1757 2086 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00050 2073 2438 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00026 31960 33333 MDTK 0/0 100.0 98.8 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00061 473 1684 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00016 16021 17052 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00016 13970 16021 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00016 12507 13973 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00089 10161 11091 MPHA 2/10 100.0 98.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00027 31216 31692 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00002 51374 53122 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00024 60152 62053 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00020 65523 66827 PBP4B 0/0 100.0 100.0 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00001 136290 137258 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00063 4214 5083 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00025 9090 9413 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00089 4026 4993 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00118 850 2055 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00001 76187 77830 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID025I
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00074 2721 3522 aadA2_1 0/0 97.9 99.9 NC_010870 aadA2 Streptomycin
contig00023 6419 7294 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00074 1826 2323 dfrA12_8 0/0 100.0 100.0 AM040708 dfrA12 Trimethoprim
contig00103 263 1026 erm(B)_18 2/2 100.0 99.0 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig00001 82540 83772 mdf(A)_1 0/0 100.0 99.9 Y08743 mdf(A)
contig00074 10161 11091 mph(A)_2 2/10 100.0 98.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00074 4000 4866 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00099 1132 2337 tet(B)_2 0/0 100.0 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00074 2743 3522 aadA2 0/0 100.0 99.9 AF156486:5012-5792 aadA2 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in K. pneumoniae Salmonella spp. Corynebacterium glutamicum C. freundii and Aeromonas spp. aminoglycoside
contig00003 99712 102861 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00022 71642 74755 acrD 0/0 100.0 100.0 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00049 8641 9798 acrE 0/0 100.0 99.9 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00049 5525 8629 acrF 0/0 100.0 99.9 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00049 10197 10859 acrS 0/0 100.0 100.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00006 90602 91423 bacA 0/0 100.0 99.9 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00044 29821 30543 baeR 0/0 100.0 99.6 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00044 28421 29824 baeS 0/0 100.0 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00010 61323 62696 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00007 15201 15833 CRP 0/0 100.0 99.7 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00023 6419 7294 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00074 1826 2323 dfrA12 0/0 100.0 100.0 GU585907.1:22103-21605 dfrA12 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00005 90366 91538 emrA 0/0 100.0 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00005 91555 93093 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00021 1067 2122 emrK 0/0 100.0 99.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00005 89709 90239 emrR 0/0 100.0 99.8 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00032 7757 9400 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00103 289 1034 ErmB 1/1 99.9 99.2 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig00003 98496 99689 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00011 40938 42071 Escherichia_coli_ampC 0/0 100.0 100.0 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00021 65523 66827 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 100.0 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00003 187826 188983 Escherichia_coli_ampH 0/0 100.0 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00001 82540 83772 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00021 2646 3260 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00021 3265 6858 evgS 0/0 100.0 99.4 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00040 1784 2512 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00040 592 1416 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00033 47705 48118 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00025 8068 8745 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00045 31344 31727 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00044 19561 20808 mdtA 0/0 100.0 97.9 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00044 20808 23930 mdtB 0/0 100.0 99.2 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00044 23931 27008 mdtC 0/0 100.0 99.0 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00040 6013 7170 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00040 2875 5988 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00001 311993 313219 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00001 321848 323056 mdtH 0/0 100.0 100.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00053 473 1684 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00013 21757 22788 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00013 22788 24839 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00013 24836 26302 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00074 10189 11091 mphA 0/0 99.7 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00022 50480 50956 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00001 165487 167235 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00002 173705 174673 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00074 4027 4866 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00099 1132 2337 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00006 66737 68224 tolC 0/0 100.0 100.0 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00002 113602 115245 yojI 0/0 100.0 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00074 2743 3522 (AGly)aadA2 0/0 100.0 99.9 X68227:66-945 (AGly)aadA2 NA
contig00021 65523 66827 (Bla)AmpC1_Ecoli 0/0 100.0 100.0 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00011 40938 42071 (Bla)AmpC2_Ecoli 0/0 100.0 100.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00003 187826 188983 (Bla)ampH_Ecoli 0/0 100.0 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00023 6419 7294 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00025 60155 62056 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00103 289 1026 (MLS)erm(B) 0/0 100.0 99.6 M11180:714-1451 (MLS)erm(B) NA
contig00074 10189 11091 (MLS)mph(A) 0/0 99.7 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00074 4027 4866 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00099 1132 2337 (Tet)tetB 0/0 100.0 99.7 AB089594:1-1206 (Tet)tetB NA
contig00074 1826 2323 (Tmt)dfrA12 0/0 100.0 100.0 Z21672:310-807 (Tmt)dfrA12 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00074 2731 3522 aadA2 0/0 100 100.0 NG_047343.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA2 STREPTOMYCIN
contig00023 6419 7294 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00011 40938 42071 blaEC 0/0 100 100.0 NG_047494.1 BlaEC family class C beta-lactamase BETA-LACTAM
contig00074 1826 2323 dfrA12 0/0 100 100.0 NG_047689.1 trimethoprim-resistant dihydrofolate reductase DfrA12 TRIMETHOPRIM
contig00103 289 1026 erm(B) 0/0 100 99.9 NG_047804.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) MACROLIDE
contig00074 10161 11091 mph(A) 2/10 100 98.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00074 4027 4866 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00099 1132 2337 tet(B) 0/0 100 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00003 98496 99689 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00003 99712 102861 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00022 71642 74755 ACRD 0/0 100.0 100.0 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00049 8641 9798 ACRE 0/0 100.0 99.9 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00049 5525 8629 ACRF 0/0 100.0 99.9 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00049 10197 10859 ACRS 0/0 100.0 100.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00011 40938 42071 AMPC 0/0 100.0 100.0 MEG_728 Drugs:betalactams:Class_C_betalactamases:AMPC NA
contig00003 187826 188983 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00074 2721 3522 ANT3-DPRIME 0/0 97.9 99.9 MEG_975 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00044 5770 7622 ASMA 0/0 100.0 97.5 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00006 90602 91423 BACA 0/0 100.0 99.9 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00044 29821 30543 BAER 0/0 100.0 99.6 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00044 28421 29824 BAES 0/0 100.0 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00002 86625 87815 BCR 0/0 100.0 99.9 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00010 60628 61326 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00010 61323 62696 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00007 15201 15833 CRP 0/0 100.0 99.7 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00121 62 1004 CTX 0/0 100.0 98.2 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00074 1826 2323 DFRA 0/0 100.0 100.0 MEG_2551 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00005 90366 91538 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00005 91555 93093 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00008 87171 88361 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00021 1067 2230 EMRK 0/0 100.0 99.7 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00005 89709 90239 EMRR 0/0 100.0 99.8 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00032 7757 9400 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00103 263 1026 ERMB 2/2 100.0 99.0 MEG_2801 Drugs:MLS:23S_rRNA_methyltransferases:ERMB NA
contig00021 3265 6858 EVGS 0/0 100.0 99.4 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00040 1784 2512 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00040 592 1416 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00033 47705 48118 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00025 8068 8745 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00045 31338 31727 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00045 30890 31324 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00001 82540 83772 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00044 19561 20808 MDTA 0/0 100.0 97.9 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00044 20808 23930 MDTB 0/0 100.0 99.2 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00044 23931 27008 MDTC 0/0 100.0 99.0 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00040 6013 7170 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00040 2875 5988 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00001 311993 313219 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00001 321848 323056 MDTH 0/0 100.0 100.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00043 1757 2086 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00043 2073 2438 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00027 31963 33336 MDTK 0/0 100.0 98.8 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00053 473 1684 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00013 21757 22788 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00013 22788 24839 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00013 24836 26302 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00074 10161 11091 MPHA 2/10 100.0 98.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00022 50480 50956 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00001 165487 167235 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00025 60155 62056 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00021 65523 66827 PBP4B 0/0 100.0 100.0 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00002 173705 174673 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00004 19983 20852 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00013 47919 48242 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00074 4026 4993 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00099 1132 2337 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00002 113602 115245 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID026
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00073 2721 3522 aadA2_1 0/0 97.9 99.9 NC_010870 aadA2 Streptomycin
contig00014 91518 92393 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00073 1826 2323 dfrA12_8 0/0 100.0 100.0 AM040708 dfrA12 Trimethoprim
contig00099 263 1026 erm(B)_18 2/2 100.0 99.0 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig00001 84130 85362 mdf(A)_1 0/0 100.0 99.9 Y08743 mdf(A)
contig00110 68 998 mph(A)_2 2/10 100.0 98.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00073 4000 4866 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00094 850 2055 tet(B)_2 0/0 100.0 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00073 2743 3522 aadA2 0/0 100.0 99.9 AF156486:5012-5792 aadA2 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in K. pneumoniae Salmonella spp. Corynebacterium glutamicum C. freundii and Aeromonas spp. aminoglycoside
contig00002 39346 42495 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00023 71642 74755 acrD 0/0 100.0 100.0 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00008 127797 128954 acrE 0/0 100.0 99.9 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00008 128966 132070 acrF 0/0 100.0 99.9 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00008 126736 127398 acrS 0/0 100.0 100.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00005 90602 91423 bacA 0/0 100.0 99.9 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00048 29821 30543 baeR 0/0 100.0 99.6 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00048 28421 29824 baeS 0/0 100.0 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00011 61323 62696 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00007 15201 15833 CRP 0/0 100.0 99.7 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00014 91518 92393 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00073 1826 2323 dfrA12 0/0 100.0 100.0 GU585907.1:22103-21605 dfrA12 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00006 90366 91538 emrA 0/0 100.0 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00006 91555 93093 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00022 1067 2122 emrK 0/0 100.0 99.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00006 89709 90239 emrR 0/0 100.0 99.8 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00034 1544 3187 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00099 289 1034 ErmB 1/1 99.9 99.2 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig00002 38130 39323 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00004 107745 108878 Escherichia_coli_ampC 0/0 100.0 100.0 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00022 65523 66827 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 100.0 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00002 127460 128617 Escherichia_coli_ampH 0/0 100.0 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00001 84130 85362 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00022 2646 3260 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00022 3265 6858 evgS 0/0 100.0 99.4 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00042 1784 2512 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00042 592 1416 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00036 43265 43678 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00025 8068 8745 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00049 31344 31727 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00048 19561 20808 mdtA 0/0 100.0 97.9 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00048 20808 23930 mdtB 0/0 100.0 99.2 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00048 23931 27008 mdtC 0/0 100.0 99.0 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00042 6013 7170 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00042 2875 5988 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00035 19640 20866 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00035 29495 30703 mdtH 0/0 100.0 100.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00055 473 1684 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00016 10928 11959 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00016 11959 14010 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00016 14007 15473 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00110 68 970 mphA 0/0 99.7 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00023 50480 50956 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00001 167077 168825 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00003 136373 137341 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00073 4027 4866 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00094 850 2055 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00005 66737 68224 tolC 0/0 100.0 100.0 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00003 76270 77913 yojI 0/0 100.0 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00073 2743 3522 (AGly)aadA2 0/0 100.0 99.9 X68227:66-945 (AGly)aadA2 NA
contig00022 65523 66827 (Bla)AmpC1_Ecoli 0/0 100.0 100.0 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00004 107745 108878 (Bla)AmpC2_Ecoli 0/0 100.0 100.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00002 127460 128617 (Bla)ampH_Ecoli 0/0 100.0 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00014 91518 92393 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00025 60155 62056 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00099 289 1026 (MLS)erm(B) 0/0 100.0 99.6 M11180:714-1451 (MLS)erm(B) NA
contig00110 68 970 (MLS)mph(A) 0/0 99.7 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00073 4027 4866 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00094 850 2055 (Tet)tetB 0/0 100.0 99.7 AB089594:1-1206 (Tet)tetB NA
contig00073 1826 2323 (Tmt)dfrA12 0/0 100.0 100.0 Z21672:310-807 (Tmt)dfrA12 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00073 2731 3522 aadA2 0/0 100 100.0 NG_047343.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA2 STREPTOMYCIN
contig00014 91518 92393 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00004 107745 108878 blaEC 0/0 100 100.0 NG_047494.1 BlaEC family class C beta-lactamase BETA-LACTAM
contig00073 1826 2323 dfrA12 0/0 100 100.0 NG_047689.1 trimethoprim-resistant dihydrofolate reductase DfrA12 TRIMETHOPRIM
contig00099 289 1026 erm(B) 0/0 100 99.9 NG_047804.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) MACROLIDE
contig00110 68 998 mph(A) 2/10 100 98.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00073 4027 4866 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00094 850 2055 tet(B) 0/0 100 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00002 38130 39323 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00002 39346 42495 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00023 71642 74755 ACRD 0/0 100.0 100.0 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00008 127797 128954 ACRE 0/0 100.0 99.9 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00008 128966 132070 ACRF 0/0 100.0 99.9 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00008 126736 127398 ACRS 0/0 100.0 100.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00004 107745 108878 AMPC 0/0 100.0 100.0 MEG_728 Drugs:betalactams:Class_C_betalactamases:AMPC NA
contig00002 127460 128617 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00073 2721 3522 ANT3-DPRIME 0/0 97.9 99.9 MEG_975 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00048 5770 7622 ASMA 0/0 100.0 97.5 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00005 90602 91423 BACA 0/0 100.0 99.9 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00048 29821 30543 BAER 0/0 100.0 99.6 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00048 28421 29824 BAES 0/0 100.0 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00003 49293 50483 BCR 0/0 100.0 99.9 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00011 60628 61326 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00011 61323 62696 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00007 15201 15833 CRP 0/0 100.0 99.7 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00116 61 984 CTX 0/0 98.0 98.3 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00073 1826 2323 DFRA 0/0 100.0 100.0 MEG_2551 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00006 90366 91538 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00006 91555 93093 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00009 87171 88361 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00022 1067 2230 EMRK 0/0 100.0 99.7 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00006 89709 90239 EMRR 0/0 100.0 99.8 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00034 1544 3187 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00099 263 1026 ERMB 2/2 100.0 99.0 MEG_2801 Drugs:MLS:23S_rRNA_methyltransferases:ERMB NA
contig00022 3265 6858 EVGS 0/0 100.0 99.4 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00042 1784 2512 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00042 592 1416 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00036 43265 43678 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00025 8068 8745 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00049 31338 31727 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00049 30890 31324 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00001 84130 85362 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00048 19561 20808 MDTA 0/0 100.0 97.9 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00048 20808 23930 MDTB 0/0 100.0 99.2 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00048 23931 27008 MDTC 0/0 100.0 99.0 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00042 6013 7170 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00042 2875 5988 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00035 19640 20866 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00035 29495 30703 MDTH 0/0 100.0 100.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00046 1757 2086 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00046 2073 2438 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00026 31963 33336 MDTK 0/0 100.0 98.8 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00055 473 1684 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00016 10928 11959 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00016 11959 14010 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00016 14007 15473 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00110 68 998 MPHA 2/10 100.0 98.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00023 50480 50956 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00001 167077 168825 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00025 60155 62056 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00022 65523 66827 PBP4B 0/0 100.0 100.0 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00003 136373 137341 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00013 38665 39534 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00016 37090 37413 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00073 4026 4993 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00094 850 2055 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00003 76270 77913 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID027
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00079 2721 3522 aadA2_1 0/0 97.9 99.9 NC_010870 aadA2 Streptomycin
contig00034 6419 7294 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00079 1826 2323 dfrA12_8 0/0 100.0 100.0 AM040708 dfrA12 Trimethoprim
contig00102 263 1026 erm(B)_18 2/2 100.0 99.0 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig00013 30137 31369 mdf(A)_1 0/0 100.0 99.9 Y08743 mdf(A)
contig00124 68 954 mph(A)_1 0/0 97.9 99.9 D16251 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00079 4000 4866 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00097 850 2055 tet(B)_2 0/0 100.0 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00079 2743 3522 aadA2 0/0 100.0 99.9 AF156486:5012-5792 aadA2 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in K. pneumoniae Salmonella spp. Corynebacterium glutamicum C. freundii and Aeromonas spp. aminoglycoside
contig00010 98538 101687 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00006 135260 138373 acrD 0/0 100.0 100.0 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00051 8445 9602 acrE 0/0 100.0 99.9 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00051 5329 8433 acrF 0/0 100.0 99.9 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00051 10001 10663 acrS 0/0 100.0 100.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00005 90701 91522 bacA 0/0 100.0 99.9 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00047 29821 30543 baeR 0/0 100.0 99.6 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00047 28421 29824 baeS 0/0 100.0 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00009 61323 62696 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00007 15201 15833 CRP 0/0 100.0 99.7 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00034 6419 7294 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00079 1826 2323 dfrA12 0/0 100.0 100.0 GU585907.1:22103-21605 dfrA12 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00014 19623 20795 emrA 0/0 100.0 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00014 20812 22350 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00024 1067 2122 emrK 0/0 100.0 99.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00014 18966 19496 emrR 0/0 100.0 99.8 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00003 120344 121987 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00102 289 1034 ErmB 1/1 99.9 99.2 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig00010 101710 102903 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00002 107745 108878 Escherichia_coli_ampC 0/0 100.0 100.0 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00024 65523 66827 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 100.0 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00010 12416 13573 Escherichia_coli_ampH 0/0 100.0 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00013 30137 31369 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00024 2646 3260 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00024 3265 6858 evgS 0/0 100.0 99.4 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00042 1784 2512 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00042 592 1416 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00020 91674 92087 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00027 8068 8745 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00048 31519 31902 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00047 19561 20808 mdtA 0/0 100.0 97.9 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00047 20808 23930 mdtB 0/0 100.0 99.2 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00047 23931 27008 mdtC 0/0 100.0 99.0 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00042 6013 7170 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00042 2875 5988 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00035 16784 18010 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00035 26639 27847 mdtH 0/0 100.0 100.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00058 473 1684 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00003 89775 90806 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00003 87724 89775 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00003 86261 87727 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00124 68 954 mphA 0/0 97.9 99.9 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00006 114098 114574 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00001 125547 127295 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00004 62214 63182 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00079 4027 4866 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00097 850 2055 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00005 66836 68323 tolC 0/0 100.0 100.0 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00004 2111 3754 yojI 0/0 100.0 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00079 2743 3522 (AGly)aadA2 0/0 100.0 99.9 X68227:66-945 (AGly)aadA2 NA
contig00024 65523 66827 (Bla)AmpC1_Ecoli 0/0 100.0 100.0 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00002 107745 108878 (Bla)AmpC2_Ecoli 0/0 100.0 100.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00010 12416 13573 (Bla)ampH_Ecoli 0/0 100.0 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00034 6419 7294 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00027 60155 62056 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00102 289 1026 (MLS)erm(B) 0/0 100.0 99.6 M11180:714-1451 (MLS)erm(B) NA
contig00124 68 954 (MLS)mph(A) 0/0 97.9 99.9 DQ445270:1626-2531 (MLS)mph(A) NA
contig00079 4027 4866 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00097 850 2055 (Tet)tetB 0/0 100.0 99.7 AB089594:1-1206 (Tet)tetB NA
contig00079 1826 2323 (Tmt)dfrA12 0/0 100.0 100.0 Z21672:310-807 (Tmt)dfrA12 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00079 2731 3522 aadA2 0/0 100.0 100.0 NG_047343.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA2 STREPTOMYCIN
contig00034 6419 7294 blaCTX-M-15 0/0 100.0 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00002 107745 108878 blaEC 0/0 100.0 100.0 NG_047494.1 BlaEC family class C beta-lactamase BETA-LACTAM
contig00079 1826 2323 dfrA12 0/0 100.0 100.0 NG_047689.1 trimethoprim-resistant dihydrofolate reductase DfrA12 TRIMETHOPRIM
contig00102 289 1026 erm(B) 0/0 100.0 99.9 NG_047804.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) MACROLIDE
contig00124 68 954 mph(A) 0/0 97.9 99.9 NG_047985.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00079 4027 4866 sul1 0/0 100.0 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00097 850 2055 tet(B) 0/0 100.0 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00010 101710 102903 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00010 98538 101687 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00006 135260 138373 ACRD 0/0 100.0 100.0 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00051 8445 9602 ACRE 0/0 100.0 99.9 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00051 5329 8433 ACRF 0/0 100.0 99.9 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00051 10001 10663 ACRS 0/0 100.0 100.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00002 107745 108878 AMPC 0/0 100.0 100.0 MEG_728 Drugs:betalactams:Class_C_betalactamases:AMPC NA
contig00010 12416 13573 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00079 2721 3522 ANT3-DPRIME 0/0 97.9 99.9 MEG_975 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00047 5770 7622 ASMA 0/0 100.0 97.5 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00005 90701 91522 BACA 0/0 100.0 99.9 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00047 29821 30543 BAER 0/0 100.0 99.6 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00047 28421 29824 BAES 0/0 100.0 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00001 23569 24759 BCR 0/0 100.0 99.9 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00009 60628 61326 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00009 61323 62696 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00007 15201 15833 CRP 0/0 100.0 99.7 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00123 62 988 CTX 0/0 98.3 98.2 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00079 1826 2323 DFRA 0/0 100.0 100.0 MEG_2551 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00014 19623 20795 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00014 20812 22350 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00008 87171 88361 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00024 1067 2230 EMRK 0/0 100.0 99.7 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00014 18966 19496 EMRR 0/0 100.0 99.8 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00003 120344 121987 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00102 263 1026 ERMB 2/2 100.0 99.0 MEG_2801 Drugs:MLS:23S_rRNA_methyltransferases:ERMB NA
contig00024 3265 6858 EVGS 0/0 100.0 99.4 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00042 1784 2512 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00042 592 1416 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00020 91674 92087 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00027 8068 8745 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00048 31513 31902 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00048 31065 31499 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00013 30137 31369 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00047 19561 20808 MDTA 0/0 100.0 97.9 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00047 20808 23930 MDTB 0/0 100.0 99.2 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00047 23931 27008 MDTC 0/0 100.0 99.0 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00042 6013 7170 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00042 2875 5988 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00035 16784 18010 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00035 26639 27847 MDTH 0/0 100.0 100.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00017 103532 103861 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00017 103180 103545 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00017 31959 33332 MDTK 0/0 100.0 98.8 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00058 473 1684 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00003 89775 90806 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00003 87724 89775 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00003 86261 87727 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00124 68 954 MPHA 0/0 97.9 99.9 MEG_4029 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00006 114098 114574 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00001 125547 127295 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00027 60155 62056 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00024 65523 66827 PBP4B 0/0 100.0 100.0 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00004 62214 63182 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00012 38665 39534 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00003 64321 64644 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00079 4026 4993 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00097 850 2055 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00004 2111 3754 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID031
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00079 1 834 aph(6)-Id_1 0/0 99.6 100.0 M28829 aph(6)-Id Streptomycin
contig00031 2385 3260 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00087 73 555 dfrA14_5 0/0 100.0 99.8 DQ388123 dfrA14 Trimethoprim
contig00067 1489 2062 dfrA7_5 3/4 100.0 98.8 AJ419170 dfrA7 Trimethoprim
contig00006 5438 6670 mdf(A)_1 0/0 100.0 98.0 Y08743 mdf(A)
contig00067 179 1045 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00050 8201 9447 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00027 21643 24792 acrB 0/0 100.0 98.8 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00001 378940 382053 acrD 0/0 100.0 98.4 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00013 130114 131271 acrE 0/0 100.0 98.8 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00013 131283 134387 acrF 0/0 100.0 97.2 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00013 129053 129715 acrS 0/0 100.0 98.3 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00079 1 834 APH(6)-Id 0/0 99.6 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00003 237652 238471 bacA 0/0 99.8 98.2 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00034 25847 26568 baeR 0/0 99.9 97.1 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00034 24447 25850 baeS 0/0 100.0 90.6 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00023 29347 30720 cpxA 0/0 100.0 98.5 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00009 15384 16016 CRP 0/0 100.0 99.0 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00031 2385 3260 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00087 73 555 dfrA14 0/0 100.0 100.0 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00067 1589 2062 dfrA7 0/0 100.0 100.0 FJ854362:2338-2812 dfrA7 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00010 36139 37311 emrA 0/0 100.0 98.1 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00010 37328 38866 emrB 0/0 100.0 97.9 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00001 285170 286225 emrK 0/0 100.0 97.8 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00010 35482 36012 emrR 0/0 100.0 98.5 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00001 283632 285170 emrY 0/0 100.0 97.7 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00025 3860 5503 eptA 0/0 100.0 91.2 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00027 24815 26008 Escherichia_coli_acrA 0/0 100.0 99.2 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00028 12860 13993 Escherichia_coli_ampC 0/0 100.0 97.5 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00004 225178 226335 Escherichia_coli_ampH 0/0 100.0 97.2 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00011 113754 114086 Escherichia_coli_emrE 0/0 100.0 91.9 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00006 5438 6670 Escherichia_coli_mdfA 0/0 100.0 96.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00001 286749 287363 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00001 287368 290961 evgS 0/0 100.0 96.2 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00009 196304 197032 gadW 0/0 100.0 99.9 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00009 197401 198225 gadX 0/0 100.0 93.8 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00015 31236 31649 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00016 7188 7860 kdpE 0/0 99.3 95.8 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00026 22140 22523 marA 0/0 100.0 98.7 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00034 15587 16834 mdtA 0/0 100.0 95.8 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00034 16834 19956 mdtB 0/0 100.0 95.4 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00034 19957 23034 mdtC 0/0 100.0 92.3 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00009 191646 192803 mdtE 0/0 100.0 98.5 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00009 192828 195941 mdtF 0/0 100.0 97.3 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00021 77335 78561 mdtG 0/0 100.0 98.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00021 67496 68704 mdtH 0/0 100.0 98.3 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00033 12206 13237 mdtN 0/0 100.0 95.1 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00033 10155 12206 mdtO 0/0 100.0 96.7 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00033 8692 10158 mdtP 0/0 100.0 97.6 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00006 130260 132008 msbA 0/0 100.0 98.1 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00001 185259 186227 pmrF 0/0 100.0 97.8 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00067 179 1018 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00050 8201 9447 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00003 210380 211867 tolC 0/0 100.0 98.2 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00020 40454 41620 ugd 0/0 100.0 96.1 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00001 125373 127016 yojI 0/0 100.0 98.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00079 1 834 (AGly)strB 0/0 99.6 100.0 FJ474091:264-1100 (AGly)strB NA
contig00028 12860 13993 (Bla)AmpC2_Ecoli 0/0 100.0 97.5 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00004 225178 226335 (Bla)ampH_Ecoli 0/0 100.0 97.2 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00031 2385 3260 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00016 60848 62749 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 98.6 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00067 179 1018 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00050 8173 9447 (Tet)tetA 0/0 100.0 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00050 9478 10128 (Tet)tetR 0/0 100.0 100.0 HF545434:53576-54226 (Tet)tetR NA
contig00087 73 546 (Tmt)dfrA14 0/0 100.0 99.8 GU726917:72-545 (Tmt)dfrA14 NA
contig00067 1589 2062 (Tmt)dhfr7 0/0 100.0 100.0 X58425:594-1067 (Tmt)dhfr7 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00079 1 834 aph(6)-Id 0/0 99.6 100 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00031 2385 3260 blaCTX-M-15 0/0 100.0 100 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00028 12860 13993 blaEC-19 0/0 100.0 99 NG_049084.1 class C extended-spectrum beta-lactamase EC-19 CEPHALOSPORIN
contig00087 73 546 dfrA14 0/0 100.0 100 NG_047696.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00067 1589 2062 dfrA7 0/0 100.0 100 NG_047737.1 trimethoprim-resistant dihydrofolate reductase DfrA7 TRIMETHOPRIM
contig00067 179 1018 sul1 0/0 100.0 100 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00050 8173 9372 tet(A) 0/0 100.0 100 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00027 24815 26008 ACRA 0/0 100.0 99.2 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00027 21643 24792 ACRB 0/0 100.0 98.8 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00001 378940 382053 ACRD 0/0 100.0 98.4 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00013 130114 131271 ACRE 0/0 100.0 98.8 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00013 131283 134387 ACRF 0/0 100.0 97.2 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00013 129053 129715 ACRS 0/0 100.0 98.3 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00004 225178 226335 AMPH 0/0 100.0 97.2 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00079 1 834 APH6 0/0 99.6 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00034 2073 3925 ASMA 0/0 100.0 97.7 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00003 237652 238471 BACA 0/0 99.8 98.4 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00034 25847 26568 BAER 0/0 99.9 97.1 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00034 24447 25850 BAES 0/0 100.0 90.6 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00001 100550 101740 BCR 0/0 100.0 96.3 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00028 12860 13993 BLAEC 0/0 100.0 99.0 MEG_1275 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00023 28652 29350 CPXAR 0/0 100.0 97.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00023 29347 30720 CPXAR 0/0 100.0 98.9 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00009 15384 16016 CRP 0/0 100.0 99.0 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00051 7643 8585 CTX 0/0 100.0 98.9 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00067 1589 2062 DFRA 0/0 100.0 100.0 MEG_2548 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00087 73 546 DFRA 0/0 100.0 100.0 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00010 36139 37311 EMRA 0/0 100.0 98.1 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00010 37328 38866 EMRB 0/0 100.0 97.9 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00008 132845 134035 EMRD 0/0 100.0 98.1 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00001 285170 286333 EMRK 0/0 100.0 97.6 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00010 35482 36012 EMRR 0/0 100.0 98.5 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00001 283632 285170 EMRY 0/0 100.0 97.8 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00025 3860 5503 EPTA 0/0 100.0 91.2 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00001 287368 290961 EVGS 0/0 100.0 97.3 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00009 196304 197032 GADW 0/0 100.0 99.9 MEG_3082 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00009 197401 198225 GADX 0/0 100.0 93.8 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00015 31236 31649 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00016 7188 7860 KDPE 0/0 99.3 95.8 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00026 22134 22523 MARA 0/0 100.0 98.7 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00026 21685 22119 MARR 0/0 100.0 98.2 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00006 5438 6670 MDFA 0/0 100.0 98.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00034 15587 16834 MDTA 0/0 100.0 95.8 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00034 16834 19956 MDTB 0/0 100.0 95.4 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00034 19957 23034 MDTC 0/0 100.0 92.3 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00009 191646 192803 MDTE 0/0 100.0 98.5 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00009 192828 195941 MDTF 0/0 100.0 97.3 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00021 77335 78561 MDTG 0/0 100.0 98.5 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00021 67496 68704 MDTH 0/0 100.0 98.3 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00026 60188 60517 MDTI 0/0 100.0 98.5 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00026 60504 60869 MDTJ 0/0 100.0 98.4 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00005 36829 38202 MDTK 0/0 100.0 97.9 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00033 12206 13237 MDTN 0/0 100.0 95.1 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00033 10155 12206 MDTO 0/0 100.0 96.7 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00033 8692 10158 MDTP 0/0 100.0 97.6 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00006 130260 132008 MSBA 0/0 100.0 98.1 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00011 113754 114086 MVRC 0/0 100.0 91.9 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00016 60848 62749 PBP2 0/0 100.0 98.6 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00001 185259 186227 PMRF 0/0 100.0 97.8 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00002 119196 120065 ROBA 0/0 100.0 97.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00022 19233 19555 SOXS 0/0 99.7 98.1 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00067 52 1019 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00050 8173 9447 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00020 40454 41620 UGD 0/0 100.0 96.1 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00001 125373 127016 YOGI 0/0 100.0 98.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID032I
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00073 1696 2556 aac(3)-IIa_1 0/0 100.0 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig00076 1540 2139 aac(6’)-Ib-cr_1 0/0 100.0 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00057 1303 2091 aadA5_1 0/0 100.0 100.0 AF137361 aadA5 Streptomycin
contig00050 8895 9698 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00050 8059 8895 aph(6)-Id_1 0/0 100.0 99.9 M28829 aph(6)-Id Streptomycin
contig00002 201260 202135 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00076 579 1409 blaOXA-1_1 0/0 100.0 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00057 699 1172 dfrA17_1 0/0 100.0 100.0 FJ460238 dfrA17 Trimethoprim
contig00017 29907 31139 mdf(A)_1 0/0 100.0 97.8 Y08743 mdf(A)
contig00081 69 990 mph(A)_2 1/1 100.0 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00057 2611 3477 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00050 9759 10574 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00050 5810 7056 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00073 1696 2556 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00076 1540 2139 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00057 1303 2091 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00001 65991 69140 acrB 0/0 100.0 98.8 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00005 99480 102593 acrD 0/0 100.0 98.7 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00012 149292 150449 acrE 0/0 100.0 98.8 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00012 150461 153565 acrF 0/0 100.0 96.6 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00012 148231 148893 acrS 0/0 100.0 98.3 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00050 8895 9698 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00050 8059 8895 APH(6)-Id 0/0 100.0 99.8 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00007 52237 53056 bacA 0/0 99.8 98.3 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00013 61611 62332 baeR 0/0 99.9 97.1 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00013 62329 63732 baeS 0/0 100.0 90.5 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00018 66690 68057 cpxA 0/0 99.6 98.5 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00008 15089 15721 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00002 201260 202135 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00057 699 1172 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00029 60267 61439 emrA 0/0 100.0 98.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00029 61456 62994 emrB 0/0 100.0 98.4 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00005 5710 6765 emrK 0/0 100.0 97.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00029 59610 60140 emrR 0/0 100.0 98.5 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00005 4172 5710 emrY 0/0 100.0 97.7 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00009 146400 148043 eptA 0/0 100.0 91.4 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00001 64775 65968 Escherichia_coli_acrA 0/0 100.0 99.1 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00032 30615 31748 Escherichia_coli_ampC 0/0 100.0 97.8 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00001 153890 155047 Escherichia_coli_ampH 0/0 100.0 97.1 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00014 28735 29067 Escherichia_coli_emrE 0/0 100.0 92.2 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00017 29907 31139 Escherichia_coli_mdfA 0/0 100.0 96.3 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00005 7289 7903 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00005 7908 11501 evgS 0/0 100.0 96.3 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00008 188688 189416 gadW 0/0 100.0 100.0 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00008 189785 190609 gadX 0/0 100.0 93.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00025 39538 39951 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00006 53994 54666 kdpE 0/0 99.3 95.5 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00026 29733 30116 marA 0/0 100.0 99.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00013 71345 72592 mdtA 0/0 100.0 95.6 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00013 68223 71345 mdtB 0/0 100.0 96.2 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00013 65145 68222 mdtC 0/0 100.0 94.0 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00008 184030 185187 mdtE 0/0 100.0 98.5 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00008 185212 188325 mdtF 0/0 100.0 97.3 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00011 91920 93146 mdtG 0/0 100.0 98.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00011 82083 83291 mdtH 0/0 100.0 98.3 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00031 38742 39974 mdtM 0/0 100.0 95.0 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00009 116127 117158 mdtN 0/0 100.0 96.2 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00009 114076 116127 mdtO 0/0 100.0 97.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00009 112613 114079 mdtP 0/0 100.0 97.6 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00081 69 974 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00023 5695 7443 msbA 0/0 100.0 98.1 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00076 579 1409 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00004 171344 172312 pmrF 0/0 100.0 97.6 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00057 2638 3477 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00050 9759 10574 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00050 5810 7056 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00007 78739 80226 tolC 0/0 100.0 98.2 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00013 125688 126854 ugd 0/0 100.0 96.0 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00004 111496 113139 yojI 0/0 100.0 97.4 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00073 1696 2556 (AGly)aac3-IIa 0/0 100 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig00057 1303 2091 (AGly)aadA5 0/0 100 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00050 8895 9698 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00050 8059 8895 (AGly)strB 0/0 100 99.9 FJ474091:264-1100 (AGly)strB NA
contig00032 30615 31748 (Bla)AmpC2_Ecoli 0/0 100 97.8 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00001 153890 155047 (Bla)ampH_Ecoli 0/0 100 97.1 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00002 201260 202135 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00076 579 1409 (Bla)blaOXA-1 0/0 100 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00006 113211 115112 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00081 69 974 (MLS)mph(A) 0/0 100 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00057 2638 3477 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00050 9759 10574 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00050 5782 7056 (Tet)tetA 0/0 100 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00050 7087 7737 (Tet)tetR 0/0 100 100.0 HF545434:53576-54226 (Tet)tetR NA
contig00057 699 1172 (Tmt)dfrA17 0/0 100 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00073 1696 2556 aac(3)-IIe 0/0 100 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig00076 1540 2094 aac(6’)-Ib-D181Y 0/0 100 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00057 1303 2091 aadA5 0/0 100 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00050 8895 9722 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00050 8059 8895 aph(6)-Id 0/0 100 100.0 NG_047466.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00002 201260 202135 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00032 30615 31748 blaEC-5 0/0 100 99.5 NG_049085.1 cephalosporin-hydrolyzing class C beta-lactamase EC-5 CEPHALOSPORIN
contig00076 579 1409 blaOXA-1 0/0 100 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00057 699 1172 dfrA17 0/0 100 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00081 69 990 mph(A) 1/1 100 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00057 2638 3477 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00050 9759 10574 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00050 5782 6981 tet(A) 0/0 100 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00073 1696 2556 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00001 64775 65968 ACRA 0/0 100.0 99.1 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00001 65991 69140 ACRB 0/0 100.0 98.8 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00005 99480 102593 ACRD 0/0 100.0 98.7 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00012 149292 150449 ACRE 0/0 100.0 98.8 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00012 150461 153565 ACRF 0/0 100.0 96.6 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00012 148231 148893 ACRS 0/0 100.0 98.3 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00001 153890 155047 AMPH 0/0 100.0 97.1 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00057 1303 2091 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00050 8895 9722 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00050 8059 8895 APH6 0/0 100.0 100.0 MEG_1084 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00013 84252 86104 ASMA 0/0 100.0 97.6 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00007 52237 53056 BACA 0/0 99.8 98.5 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00013 61611 62332 BAER 0/0 99.9 97.1 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00013 62329 63732 BAES 0/0 100.0 90.5 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00004 86673 87863 BCR 0/0 100.0 96.6 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00032 30615 31748 BLAEC 0/0 100.0 99.5 MEG_1275 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00018 65995 66693 CPXAR 0/0 100.0 98.1 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00018 66690 68057 CPXAR 0/0 99.6 99.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00008 15089 15721 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00057 699 1172 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00029 60267 61439 EMRA 0/0 100.0 98.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00029 61456 62994 EMRB 0/0 100.0 98.4 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00002 194231 195421 EMRD 0/0 100.0 97.5 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00005 5710 6873 EMRK 0/0 100.0 97.4 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00029 59610 60140 EMRR 0/0 100.0 98.5 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00005 4172 5710 EMRY 0/0 100.0 97.7 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00009 146400 148043 EPTA 0/0 100.0 91.4 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00005 7908 11501 EVGS 0/0 100.0 97.4 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00008 188688 189416 GADW 0/0 100.0 100.0 MEG_3082 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00008 189785 190609 GADX 0/0 100.0 93.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00025 39538 39951 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00006 53994 54666 KDPE 0/0 99.3 95.5 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00026 29727 30116 MARA 0/0 100.0 99.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00026 29278 29712 MARR 0/0 100.0 98.2 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00017 29907 31139 MDFA 0/0 100.0 97.9 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00013 71345 72592 MDTA 0/0 100.0 95.6 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00013 68223 71345 MDTB 0/0 100.0 96.2 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00013 65145 68222 MDTC 0/0 100.0 94.0 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00008 184030 185187 MDTE 0/0 100.0 98.5 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00008 185212 188325 MDTF 0/0 100.0 97.3 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00011 91920 93146 MDTG 0/0 100.0 98.5 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00011 82083 83291 MDTH 0/0 100.0 98.3 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00026 60681 61010 MDTI 0/0 100.0 98.8 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00026 60997 61362 MDTJ 0/0 100.0 98.4 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00021 60316 61688 MDTK 0/0 99.9 97.7 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00031 38742 39974 MDTM 0/0 100.0 95.0 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00009 116127 117158 MDTN 0/0 100.0 96.2 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00009 114076 116127 MDTO 0/0 100.0 97.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00009 112613 114079 MDTP 0/0 100.0 97.6 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00081 69 990 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00023 5695 7443 MSBA 0/0 100.0 98.1 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00014 28735 29067 MVRC 0/0 100.0 92.2 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00076 579 1409 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00006 113211 115112 PBP2 0/0 100.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00004 171344 172312 PMRF 0/0 100.0 97.6 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00003 19703 20572 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00009 84260 84582 SOXS 0/0 99.7 98.1 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00057 2637 3604 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00050 9759 10574 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00050 5782 7056 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00013 125688 126854 UGD 0/0 100.0 96.0 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00004 111496 113139 YOGI 0/0 100.0 97.4 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID033I
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00060 19123 19926 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00060 18287 19123 aph(6)-Id_1 0/0 100.0 100.0 M28829 aph(6)-Id Streptomycin
contig00060 15299 16174 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00096 183 665 dfrA14_5 0/0 100.0 99.6 DQ388123 dfrA14 Trimethoprim
contig00048 27861 29093 mdf(A)_1 0/0 100.0 99.0 Y08743 mdf(A)
contig00060 10002 10658 qnrS1_1 0/0 100.0 100.0 AB187515 qnrS1 Ciprofloxacin
contig00060 19987 20802 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00091 1676 2922 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00040 38756 41905 acrB 0/0 100.0 99.5 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00012 71770 74883 acrD 0/0 100.0 99.3 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00003 144696 145853 acrE 0/0 100.0 99.0 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00003 145865 148969 acrF 0/0 100.0 99.1 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00003 143635 144297 acrS 0/0 100.0 98.9 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00060 19123 19926 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00060 18287 19123 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00016 65363 66184 bacA 0/0 100.0 100.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00008 91520 92242 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00008 90120 91523 baeS 0/0 100.0 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00014 61321 62694 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00004 14925 15557 CRP 0/0 100.0 99.8 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00060 15299 16174 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00096 183 665 dfrA14 0/0 100.0 99.8 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00053 28123 29295 emrA 0/0 100.0 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00053 29312 30850 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00050 3675 4730 emrK 0/0 100.0 99.8 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00053 27466 27996 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00050 2137 3675 emrY 0/0 100.0 99.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00026 7717 9360 eptA 0/0 100.0 99.5 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00040 37540 38733 Escherichia_coli_acrA 0/0 100.0 99.5 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00026 51573 52706 Escherichia_coli_ampC 0/0 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00045 14217 15521 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.7 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00009 17331 18488 Escherichia_coli_ampH 0/0 100.0 98.9 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00048 27861 29093 Escherichia_coli_mdfA 0/0 100.0 97.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00050 5254 5868 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00050 5873 9466 evgS 0/0 100.0 100.0 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00042 1784 2512 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00042 592 1416 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00007 118839 119252 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00039 8002 8679 kdpE 0/0 100.0 99.4 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00017 46177 46560 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00008 81260 82507 mdtA 0/0 100.0 100.0 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00008 82507 85629 mdtB 0/0 100.0 98.9 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00008 85630 88707 mdtC 0/0 100.0 99.8 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00042 6013 7170 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00042 2875 5988 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00049 24804 26030 mdtG 0/0 100.0 99.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00049 14968 16176 mdtH 0/0 100.0 98.3 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00056 8672 9883 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00010 89191 90222 mdtN 0/0 100.0 99.5 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00010 87140 89191 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00010 85677 87143 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00012 50610 51086 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00006 2197 3945 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00002 62175 63143 pmrF 0/0 100.0 99.9 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00060 10002 10658 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00060 19987 20802 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00091 1676 2922 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00016 41500 42987 tolC 0/0 100.0 100.0 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00002 2050 3693 yojI 0/0 100.0 99.9 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00060 19123 19926 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00060 18287 19123 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00045 14217 15521 (Bla)AmpC1_Ecoli 0/0 100 98.7 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00026 51573 52706 (Bla)AmpC2_Ecoli 0/0 100 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00009 17331 18488 (Bla)ampH_Ecoli 0/0 100 98.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00060 15299 16174 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00067 8261 10162 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 99.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00060 10002 10658 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00060 19987 20802 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00091 1648 2922 (Tet)tetA 0/0 100 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00096 183 656 (Tmt)dfrA14 0/0 100 100.0 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00060 19123 19950 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00060 18287 19123 aph(6)-Id 0/0 100 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00060 15299 16174 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00026 51573 52706 blaEC 0/0 100 98.2 NG_047496.1 BlaEC family class C beta-lactamase BETA-LACTAM
contig00096 183 656 dfrA14 0/0 100 100.0 NG_056035.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00060 10002 10658 qnrS1 0/0 100 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig00060 19987 20802 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00091 1648 2847 tet(A) 0/0 100 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00040 37540 38733 ACRA 0/0 100.0 99.5 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00040 38756 41905 ACRB 0/0 100.0 99.5 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00012 71770 74883 ACRD 0/0 100.0 99.3 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00003 144696 145853 ACRE 0/0 100.0 99.0 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00003 145865 148969 ACRF 0/0 100.0 99.1 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00003 143635 144297 ACRS 0/0 100.0 98.9 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00009 17331 18488 AMPH 0/0 100.0 98.9 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00060 19123 19950 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00060 18287 19123 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00008 66995 68847 ASMA 0/0 100.0 98.1 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00016 65363 66184 BACA 0/0 100.0 100.0 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00008 91520 92242 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00008 90120 91523 BAES 0/0 100.0 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00021 49342 50532 BCR 0/0 100.0 100.0 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00026 51573 52706 BLAEC 0/0 100.0 98.2 MEG_1276 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00014 60626 61324 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00014 61321 62694 CPXAR 0/0 100.0 99.4 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00004 14925 15557 CRP 0/0 100.0 99.8 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00076 132 1074 CTX 0/0 100.0 99.2 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00096 183 656 DFRA 0/0 100.0 99.8 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00053 28123 29295 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00053 29312 30850 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00027 16748 17938 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00050 3675 4838 EMRK 0/0 100.0 99.8 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00053 27466 27996 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00050 2137 3675 EMRY 0/0 100.0 99.1 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00026 7717 9360 EPTA 0/0 100.0 99.5 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00050 5873 9466 EVGS 0/0 100.0 100.0 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00042 1784 2512 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00042 592 1416 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00007 118839 119252 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00039 8002 8679 KDPE 0/0 100.0 99.4 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00017 46171 46560 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00017 45723 46157 MARR 0/0 100.0 99.8 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00048 27861 29093 MDFA 0/0 100.0 99.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00008 81260 82507 MDTA 0/0 100.0 100.0 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00008 82507 85629 MDTB 0/0 100.0 98.9 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00008 85630 88707 MDTC 0/0 100.0 99.8 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00042 6013 7170 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00042 2875 5988 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00049 24804 26030 MDTG 0/0 100.0 99.9 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00049 14968 16176 MDTH 0/0 100.0 98.3 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00001 210422 210751 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00001 210070 210435 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00001 138668 140041 MDTK 0/0 100.0 98.8 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00056 8672 9883 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00010 89191 90222 MDTN 0/0 100.0 99.5 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00010 87140 89191 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00010 85677 87143 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00012 50610 51086 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00006 2197 3945 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00067 8261 10162 PBP2 0/0 100.0 99.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00045 14217 15521 PBP4B 0/0 100.0 98.7 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00002 62175 63143 PMRF 0/0 100.0 99.9 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00060 10002 10658 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00029 38115 38984 ROBA 0/0 100.0 98.8 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00010 63398 63720 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00060 19987 20802 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00091 1648 2922 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00002 2050 3693 YOGI 0/0 100.0 99.9 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID034II
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00070 2721 3522 aadA2_1 0/0 97.9 99.9 NC_010870 aadA2 Streptomycin
contig00080 6419 7294 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00070 1826 2323 dfrA12_8 0/0 100.0 100.0 AM040708 dfrA12 Trimethoprim
contig00101 263 1026 erm(B)_18 2/2 100.0 99.0 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig00015 30313 31545 mdf(A)_1 0/0 100.0 99.9 Y08743 mdf(A)
contig00112 68 998 mph(A)_2 2/10 100.0 98.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00070 4000 4866 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00098 1132 2337 tet(B)_2 0/0 100.0 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00070 2743 3522 aadA2 0/0 100.0 99.9 AF156486:5012-5792 aadA2 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in K. pneumoniae Salmonella spp. Corynebacterium glutamicum C. freundii and Aeromonas spp. aminoglycoside
contig00002 99712 102861 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00032 38918 42031 acrD 0/0 100.0 100.0 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00010 127797 128954 acrE 0/0 100.0 99.9 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00010 128966 132070 acrF 0/0 100.0 99.9 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00010 126736 127398 acrS 0/0 100.0 100.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00008 90602 91423 bacA 0/0 100.0 99.9 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00043 29821 30543 baeR 0/0 100.0 99.6 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00043 28421 29824 baeS 0/0 100.0 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00013 61200 62573 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00009 15201 15833 CRP 0/0 100.0 99.7 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00080 6419 7294 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00070 1826 2323 dfrA12 0/0 100.0 100.0 GU585907.1:22103-21605 dfrA12 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00005 90366 91538 emrA 0/0 100.0 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00005 91555 93093 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00023 1067 2122 emrK 0/0 100.0 99.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00005 89709 90239 emrR 0/0 100.0 99.8 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00007 120014 121657 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00101 289 1034 ErmB 1/1 99.9 99.2 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig00002 98496 99689 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00004 107745 108878 Escherichia_coli_ampC 0/0 100.0 100.0 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00023 65523 66827 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 100.0 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00002 187826 188983 Escherichia_coli_ampH 0/0 100.0 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00015 30313 31545 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00023 2646 3260 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00023 3265 6858 evgS 0/0 100.0 99.4 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00038 1784 2512 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00038 592 1416 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00018 91674 92087 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00076 8068 8745 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00044 31343 31726 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00043 19561 20808 mdtA 0/0 100.0 97.9 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00043 20808 23930 mdtB 0/0 100.0 99.2 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00043 23931 27008 mdtC 0/0 100.0 99.0 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00038 6013 7170 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00038 2875 5988 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00034 18401 19627 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00034 28256 29464 mdtH 0/0 100.0 100.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00051 473 1684 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00007 89445 90476 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00007 87394 89445 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00007 85931 87397 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00112 68 970 mphA 0/0 99.7 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00032 17756 18232 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00006 51374 53122 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00001 173705 174673 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00070 4027 4866 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00098 1132 2337 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00008 66737 68224 tolC 0/0 100.0 100.0 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00001 113602 115245 yojI 0/0 100.0 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00070 2743 3522 (AGly)aadA2 0/0 100.0 99.9 X68227:66-945 (AGly)aadA2 NA
contig00023 65523 66827 (Bla)AmpC1_Ecoli 0/0 100.0 100.0 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00004 107745 108878 (Bla)AmpC2_Ecoli 0/0 100.0 100.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00002 187826 188983 (Bla)ampH_Ecoli 0/0 100.0 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00080 6419 7294 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00026 51171 53072 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00101 289 1026 (MLS)erm(B) 0/0 100.0 99.6 M11180:714-1451 (MLS)erm(B) NA
contig00112 68 970 (MLS)mph(A) 0/0 99.7 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00070 4027 4866 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00098 1132 2337 (Tet)tetB 0/0 100.0 99.7 AB089594:1-1206 (Tet)tetB NA
contig00070 1826 2323 (Tmt)dfrA12 0/0 100.0 100.0 Z21672:310-807 (Tmt)dfrA12 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00070 2731 3522 aadA2 0/0 100 100.0 NG_047343.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA2 STREPTOMYCIN
contig00080 6419 7294 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00004 107745 108878 blaEC 0/0 100 100.0 NG_047494.1 BlaEC family class C beta-lactamase BETA-LACTAM
contig00070 1826 2323 dfrA12 0/0 100 100.0 NG_047689.1 trimethoprim-resistant dihydrofolate reductase DfrA12 TRIMETHOPRIM
contig00101 289 1026 erm(B) 0/0 100 99.9 NG_047804.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) MACROLIDE
contig00112 68 998 mph(A) 2/10 100 98.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00070 4027 4866 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00098 1132 2337 tet(B) 0/0 100 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00002 98496 99689 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00002 99712 102861 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00032 38918 42031 ACRD 0/0 100.0 100.0 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00010 127797 128954 ACRE 0/0 100.0 99.9 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00010 128966 132070 ACRF 0/0 100.0 99.9 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00010 126736 127398 ACRS 0/0 100.0 100.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00004 107745 108878 AMPC 0/0 100.0 100.0 MEG_728 Drugs:betalactams:Class_C_betalactamases:AMPC NA
contig00002 187826 188983 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00070 2721 3522 ANT3-DPRIME 0/0 97.9 99.9 MEG_975 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00043 5770 7622 ASMA 0/0 100.0 97.5 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00008 90602 91423 BACA 0/0 100.0 99.9 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00043 29821 30543 BAER 0/0 100.0 99.6 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00043 28421 29824 BAES 0/0 100.0 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00001 86625 87815 BCR 0/0 100.0 99.9 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00013 60505 61203 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00013 61200 62573 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00009 15201 15833 CRP 0/0 100.0 99.7 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00120 62 1004 CTX 0/0 100.0 98.2 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00070 1826 2323 DFRA 0/0 100.0 100.0 MEG_2551 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00005 90366 91538 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00005 91555 93093 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00011 87171 88361 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00023 1067 2230 EMRK 0/0 100.0 99.7 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00005 89709 90239 EMRR 0/0 100.0 99.8 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00007 120014 121657 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00101 263 1026 ERMB 2/2 100.0 99.0 MEG_2801 Drugs:MLS:23S_rRNA_methyltransferases:ERMB NA
contig00023 3265 6858 EVGS 0/0 100.0 99.4 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00038 1784 2512 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00038 592 1416 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00018 91674 92087 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00076 8068 8745 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00044 31337 31726 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00044 30889 31323 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00015 30313 31545 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00043 19561 20808 MDTA 0/0 100.0 97.9 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00043 20808 23930 MDTB 0/0 100.0 99.2 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00043 23931 27008 MDTC 0/0 100.0 99.0 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00038 6013 7170 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00038 2875 5988 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00034 18401 19627 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00034 28256 29464 MDTH 0/0 100.0 100.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00042 1757 2086 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00042 2073 2438 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00037 31963 33336 MDTK 0/0 100.0 98.8 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00051 473 1684 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00007 89445 90476 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00007 87394 89445 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00007 85931 87397 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00112 68 998 MPHA 2/10 100.0 98.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00032 17756 18232 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00006 51374 53122 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00026 51171 53072 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00023 65523 66827 PBP4B 0/0 100.0 100.0 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00001 173705 174673 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00003 28156 29025 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00007 63991 64314 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00070 4026 4993 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00098 1132 2337 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00001 113602 115245 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID034I
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00079 2721 3522 aadA2_1 0/0 97.9 99.9 NC_010870 aadA2 Streptomycin
contig00042 6419 7294 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00079 1826 2323 dfrA12_8 0/0 100.0 100.0 AM040708 dfrA12 Trimethoprim
contig00109 263 1026 erm(B)_18 2/2 100.0 99.0 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig00007 67552 68784 mdf(A)_1 0/0 100.0 99.9 Y08743 mdf(A)
contig00120 68 998 mph(A)_2 2/10 100.0 98.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00079 4000 4866 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00103 850 2055 tet(B)_2 0/0 100.0 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00079 2743 3522 aadA2 0/0 100.0 99.9 AF156486:5012-5792 aadA2 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in K. pneumoniae Salmonella spp. Corynebacterium glutamicum C. freundii and Aeromonas spp. aminoglycoside
contig00001 39392 42541 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00008 135351 138464 acrD 0/0 100.0 100.0 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00011 127888 129045 acrE 0/0 100.0 99.9 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00011 129057 132161 acrF 0/0 100.0 99.9 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00011 126827 127489 acrS 0/0 100.0 100.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00010 90602 91423 bacA 0/0 100.0 99.9 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00047 29821 30543 baeR 0/0 100.0 99.6 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00047 28421 29824 baeS 0/0 100.0 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00013 61323 62696 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00009 15750 16382 CRP 0/0 100.0 99.7 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00042 6419 7294 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00079 1826 2323 dfrA12 0/0 100.0 100.0 GU585907.1:22103-21605 dfrA12 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00004 90366 91538 emrA 0/0 100.0 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00004 91555 93093 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00021 1067 2122 emrK 0/0 100.0 99.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00004 89709 90239 emrR 0/0 100.0 99.8 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00031 7767 9410 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00109 289 1034 ErmB 1/1 99.9 99.2 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig00001 38176 39369 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00003 107745 108878 Escherichia_coli_ampC 0/0 100.0 100.0 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00021 65523 66827 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 100.0 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00001 127506 128663 Escherichia_coli_ampH 0/0 100.0 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00007 67552 68784 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00021 2646 3260 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00021 3265 6858 evgS 0/0 100.0 99.4 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00065 2243 2971 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00065 1051 1875 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00017 91674 92087 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00057 8068 8745 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00048 31344 31727 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00047 19561 20808 mdtA 0/0 100.0 97.9 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00047 20808 23930 mdtB 0/0 100.0 99.2 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00047 23931 27008 mdtC 0/0 100.0 99.0 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00065 6472 7629 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00065 3334 6447 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00033 18401 19627 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00033 28256 29464 mdtH 0/0 100.0 100.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00053 473 1684 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00037 22336 23367 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00037 20285 22336 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00037 18822 20288 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00120 68 970 mphA 0/0 99.7 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00008 114189 114665 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00005 51374 53122 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00006 62062 63030 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00079 4027 4866 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00103 850 2055 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00010 66737 68224 tolC 0/0 100.0 100.0 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00006 1959 3602 yojI 0/0 100.0 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00079 2743 3522 (AGly)aadA2 0/0 100.0 99.9 X68227:66-945 (AGly)aadA2 NA
contig00021 65523 66827 (Bla)AmpC1_Ecoli 0/0 100.0 100.0 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00003 107745 108878 (Bla)AmpC2_Ecoli 0/0 100.0 100.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00001 127506 128663 (Bla)ampH_Ecoli 0/0 100.0 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00042 6419 7294 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00032 38461 40362 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00109 289 1026 (MLS)erm(B) 0/0 100.0 99.6 M11180:714-1451 (MLS)erm(B) NA
contig00120 68 970 (MLS)mph(A) 0/0 99.7 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00079 4027 4866 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00103 850 2055 (Tet)tetB 0/0 100.0 99.7 AB089594:1-1206 (Tet)tetB NA
contig00079 1826 2323 (Tmt)dfrA12 0/0 100.0 100.0 Z21672:310-807 (Tmt)dfrA12 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00079 2731 3522 aadA2 0/0 100 100.0 NG_047343.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA2 STREPTOMYCIN
contig00042 6419 7294 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00003 107745 108878 blaEC 0/0 100 100.0 NG_047494.1 BlaEC family class C beta-lactamase BETA-LACTAM
contig00079 1826 2323 dfrA12 0/0 100 100.0 NG_047689.1 trimethoprim-resistant dihydrofolate reductase DfrA12 TRIMETHOPRIM
contig00109 289 1026 erm(B) 0/0 100 99.9 NG_047804.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) MACROLIDE
contig00120 68 998 mph(A) 2/10 100 98.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00079 4027 4866 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00103 850 2055 tet(B) 0/0 100 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00001 38176 39369 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00001 39392 42541 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00008 135351 138464 ACRD 0/0 100.0 100.0 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00011 127888 129045 ACRE 0/0 100.0 99.9 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00011 129057 132161 ACRF 0/0 100.0 99.9 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00011 126827 127489 ACRS 0/0 100.0 100.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00003 107745 108878 AMPC 0/0 100.0 100.0 MEG_728 Drugs:betalactams:Class_C_betalactamases:AMPC NA
contig00001 127506 128663 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00079 2721 3522 ANT3-DPRIME 0/0 97.9 99.9 MEG_975 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00047 5770 7622 ASMA 0/0 100.0 97.5 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00010 90602 91423 BACA 0/0 100.0 99.9 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00047 29821 30543 BAER 0/0 100.0 99.6 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00047 28421 29824 BAES 0/0 100.0 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00024 49210 50400 BCR 0/0 100.0 99.9 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00013 60628 61326 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00013 61323 62696 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00009 15750 16382 CRP 0/0 100.0 99.7 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00128 61 984 CTX 0/0 98.0 98.3 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00079 1826 2323 DFRA 0/0 100.0 100.0 MEG_2551 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00004 90366 91538 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00004 91555 93093 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00012 43177 44367 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00021 1067 2230 EMRK 0/0 100.0 99.7 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00004 89709 90239 EMRR 0/0 100.0 99.8 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00031 7767 9410 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00109 263 1026 ERMB 2/2 100.0 99.0 MEG_2801 Drugs:MLS:23S_rRNA_methyltransferases:ERMB NA
contig00021 3265 6858 EVGS 0/0 100.0 99.4 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00065 2243 2971 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00065 1051 1875 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00017 91674 92087 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00057 8068 8745 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00048 31338 31727 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00048 30890 31324 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00007 67552 68784 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00047 19561 20808 MDTA 0/0 100.0 97.9 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00047 20808 23930 MDTB 0/0 100.0 99.2 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00047 23931 27008 MDTC 0/0 100.0 99.0 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00065 6472 7629 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00065 3334 6447 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00033 18401 19627 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00033 28256 29464 MDTH 0/0 100.0 100.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00045 1757 2086 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00045 2073 2438 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00025 31963 33336 MDTK 0/0 100.0 98.8 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00053 473 1684 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00037 22336 23367 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00037 20285 22336 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00037 18822 20288 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00120 68 998 MPHA 2/10 100.0 98.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00008 114189 114665 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00005 51374 53122 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00032 38461 40362 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00021 65523 66827 PBP4B 0/0 100.0 100.0 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00006 62062 63030 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00002 19983 20852 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00026 2753 3076 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00079 4026 4993 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00103 850 2055 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00006 1959 3602 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID037
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00117 2601 3461 blaSHV-12_1 0/0 100 100.0 KF976405 blaSHV-12 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00072 18824 19306 dfrA14_5 0/0 100 99.6 DQ388123 dfrA14 Trimethoprim
contig00040 30290 31522 mdf(A)_1 0/0 100 99.9 Y08743 mdf(A)
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00022 35950 39099 acrB 0/0 100.0 99.8 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00003 134904 138017 acrD 0/0 100.0 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00057 8641 9798 acrE 0/0 100.0 99.0 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00057 5525 8629 acrF 0/0 100.0 99.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00057 10197 10859 acrS 0/0 100.0 99.1 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00002 95858 96679 bacA 0/0 100.0 100.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00001 132646 133368 baeR 0/0 100.0 98.1 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00001 133365 134768 baeS 0/0 100.0 98.8 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00020 22373 23746 cpxA 0/0 100.0 98.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00009 15387 16019 CRP 0/0 100.0 99.8 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00072 18824 19306 dfrA14 0/0 100.0 99.8 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00005 62310 63482 emrA 0/0 100.0 99.8 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00005 63499 65037 emrB 0/0 100.0 99.9 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00004 125401 126456 emrK 0/0 100.0 99.3 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00005 61653 62183 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00004 123863 125401 emrY 0/0 100.0 98.8 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00053 7690 9333 eptA 0/0 100.0 99.8 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00022 39122 40315 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00055 16878 18011 Escherichia_coli_ampC 0/0 100.0 98.5 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00003 169461 170765 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 97.8 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00024 49342 50499 Escherichia_coli_ampH 0/0 100.0 98.9 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00040 30290 31522 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00004 126980 127594 evgA 0/0 100.0 99.3 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00004 127599 131192 evgS 0/0 100.0 99.4 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00037 40035 40763 gadW 0/0 100.0 94.5 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00037 41131 41955 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00027 5179 5592 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00099 8068 8745 kdpE 0/0 100.0 99.1 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00015 19337 19720 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00001 142381 143628 mdtA 0/0 100.0 99.9 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00001 139259 142381 mdtB 0/0 100.0 99.0 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00001 136181 139258 mdtC 0/0 100.0 99.5 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00037 35377 36534 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00037 36559 39672 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00008 84610 85836 mdtG 0/0 100.0 99.8 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00008 74771 75979 mdtH 0/0 100.0 97.8 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00071 262 1473 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00039 20077 21108 mdtN 0/0 100.0 99.9 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00039 18026 20077 mdtO 0/0 100.0 99.8 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00039 16563 18029 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00003 113964 114440 mphB 0/0 100.0 99.4 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00006 51524 53272 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00007 106948 107916 pmrF 0/0 100.0 99.6 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00117 2601 3461 SHV-134 0/0 100.0 99.9 HM559945:0-861 SHV-134 is an extended-spectrum beta-lactamase. carbapenem, cephalosporin, penam
contig00002 71958 73445 tolC 0/0 100.0 99.7 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00001 194385 195551 ugd 0/0 100.0 96.2 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00007 47104 48747 yojI 0/0 100.0 99.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00003 169461 170765 (Bla)AmpC1_Ecoli 0/0 100 97.8 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00055 16878 18011 (Bla)AmpC2_Ecoli 0/0 100 98.5 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00024 49342 50499 (Bla)ampH_Ecoli 0/0 100 98.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00117 2601 3461 (Bla)blaSHV-12 0/0 100 100.0 FJ685654:24-860 (Bla)blaSHV-12 NA
contig00014 19999 21900 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 99.5 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00072 18824 19297 (Tmt)dfrA14 0/0 100 100.0 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00055 16878 18011 blaEC 0/0 100 100 NG_047496.1 BlaEC family class C beta-lactamase BETA-LACTAM
contig00117 2601 3461 blaSHV-12 0/0 100 100 NG_050590.1 class A extended-spectrum beta-lactamase SHV-12 CEPHALOSPORIN
contig00072 18824 19297 dfrA14 0/0 100 100 NG_056035.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00022 39122 40315 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00022 35950 39099 ACRB 0/0 100.0 99.8 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00003 134904 138017 ACRD 0/0 100.0 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00057 8641 9798 ACRE 0/0 100.0 99.0 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00057 5525 8629 ACRF 0/0 100.0 99.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00057 10197 10859 ACRS 0/0 100.0 99.1 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00024 49342 50499 AMPH 0/0 100.0 98.9 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00001 155297 157149 ASMA 0/0 100.0 93.8 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00002 95858 96679 BACA 0/0 100.0 100.0 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00001 132646 133368 BAER 0/0 100.0 98.1 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00001 133365 134768 BAES 0/0 100.0 98.8 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00001 8223 9413 BCR 0/0 100.0 97.1 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00055 16878 18011 BLAEC 0/0 100.0 100.0 MEG_1276 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00020 21678 22376 CPXAR 0/0 100.0 99.7 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00020 22373 23746 CPXAR 0/0 100.0 98.6 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00009 15387 16019 CRP 0/0 100.0 99.8 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00015 65608 66550 CTX 0/0 100.0 98.8 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00072 18824 19297 DFRA 0/0 100.0 99.8 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00005 62310 63482 EMRA 0/0 100.0 99.8 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00005 63499 65037 EMRB 0/0 100.0 99.9 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00018 16827 18017 EMRD 0/0 100.0 99.8 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00004 125401 126564 EMRK 0/0 100.0 99.1 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00005 61653 62183 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00004 123863 125401 EMRY 0/0 100.0 98.9 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00053 7690 9333 EPTA 0/0 100.0 99.8 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00004 127599 131192 EVGS 0/0 100.0 99.4 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00037 40035 40763 GADW 0/0 100.0 99.9 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00037 41131 41955 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00027 5179 5592 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00099 8068 8745 KDPE 0/0 100.0 99.1 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00015 19337 19726 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00015 19740 20174 MARR 0/0 100.0 97.5 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00040 30290 31522 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00001 142381 143628 MDTA 0/0 100.0 99.9 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00001 139259 142381 MDTB 0/0 100.0 99.0 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00001 136181 139258 MDTC 0/0 100.0 99.5 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00037 35377 36534 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00037 36559 39672 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00008 84610 85836 MDTG 0/0 100.0 99.8 MEG_3754 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00008 74771 75979 MDTH 0/0 100.0 97.8 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00048 309 638 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00023 12649 14022 MDTK 0/0 100.0 99.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00071 262 1473 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00039 20077 21108 MDTN 0/0 100.0 99.9 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00039 18026 20077 MDTO 0/0 100.0 99.8 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00039 16563 18029 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00003 113964 114440 MPHB 0/0 100.0 99.4 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00006 51524 53272 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00014 19999 21900 PBP2 0/0 100.0 99.5 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00003 169461 170765 PBP4B 0/0 100.0 97.8 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00007 106948 107916 PMRF 0/0 100.0 99.6 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00060 10835 11704 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00117 2504 3507 SHV 0/0 99.7 98.9 MEG_6428 Drugs:betalactams:Class_A_betalactamases:SHV NA
contig00104 1347 1670 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00001 194385 195551 UGD 0/0 100.0 96.2 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00007 47104 48747 YOGI 0/0 100.0 99.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID043I
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00080 35 895 aac(3)-IId_1 0/0 100.0 99.9 EU022314 aac(3)-IId Gentamicin, Tobramycin
contig00072 3038 3826 aadA5_1 0/0 100.0 100.0 AF137361 aadA5 Streptomycin
contig00081 1610 2412 aph(3’’)-Ib_2 0/0 99.9 100.0 AF024602 aph(3’’)-Ib Streptomycin
contig00081 774 1610 aph(6)-Id_1 0/0 100.0 99.9 M28829 aph(6)-Id Streptomycin
contig00032 28202 29077 blaCTX-M-14_1 0/0 100.0 100.0 AF252622 blaCTX-M-14 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00082 1835 2695 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00072 3957 4430 dfrA17_1 0/0 100.0 100.0 FJ460238 dfrA17 Trimethoprim
contig00014 32368 33600 mdf(A)_1 0/0 100.0 98.1 Y08743 mdf(A)
contig00095 69 990 mph(A)_2 1/1 100.0 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00072 1652 2518 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00078 704 1519 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00080 35 895 AAC(3)-IId 0/0 100.0 99.9 EU022314.1:0-861 AAC(3)-IId is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00072 3038 3826 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00043 12982 16131 acrB 0/0 100.0 99.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00008 134559 137672 acrD 0/0 100.0 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00017 83805 84962 acrE 0/0 100.0 98.4 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00017 84974 88078 acrF 0/0 100.0 97.8 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00017 82744 83406 acrS 0/0 100.0 98.9 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00081 1610 2413 APH(3’’)-Ib 0/0 100.0 99.9 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00081 774 1610 APH(6)-Id 0/0 100.0 99.8 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00002 115744 116563 bacA 0/0 99.8 96.2 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00025 10839 11560 baeR 0/0 99.9 98.1 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00025 9439 10842 baeS 0/0 100.0 96.4 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00018 22716 24089 cpxA 0/0 100.0 98.6 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00009 15391 16023 CRP 0/0 100.0 99.0 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00032 28202 29077 CTX-M-14 0/0 100.0 100.0 AF252622:1740-2616 CTX-M-14 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00072 3957 4430 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00026 16391 17563 emrA 0/0 100.0 98.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00026 17580 19118 emrB 0/0 100.0 98.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00012 85378 86433 emrK 0/0 100.0 97.8 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00026 15734 16264 emrR 0/0 100.0 99.4 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00012 83840 85378 emrY 0/0 100.0 97.4 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00004 80809 82452 eptA 0/0 100.0 98.2 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00043 16154 17347 Escherichia_coli_acrA 0/0 100.0 99.2 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00004 124371 125504 Escherichia_coli_ampC 0/0 100.0 97.7 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00042 27940 29244 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 96.0 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00007 24730 25887 Escherichia_coli_ampH 0/0 100.0 96.8 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00014 32368 33600 Escherichia_coli_mdfA 0/0 100.0 96.6 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00012 86957 87571 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00012 87576 91169 evgS 0/0 100.0 96.8 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00028 54226 54954 gadW 0/0 100.0 95.6 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00028 55323 56147 gadX 0/0 100.0 94.3 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00047 28158 28571 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00011 7853 8530 kdpE 0/0 100.0 95.4 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00001 282280 282663 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00025 579 1826 mdtA 0/0 100.0 97.4 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00025 1826 4948 mdtB 0/0 100.0 96.7 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00025 4949 8026 mdtC 0/0 100.0 97.1 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00028 49568 50725 mdtE 0/0 100.0 98.8 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00028 50750 53863 mdtF 0/0 100.0 98.5 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00016 2669 3895 mdtG 0/0 100.0 98.5 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00023 69659 70867 mdtH 0/0 100.0 97.8 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00004 57173 58204 mdtN 0/0 100.0 96.4 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00004 55122 57173 mdtO 0/0 100.0 96.3 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00004 53659 55125 mdtP 0/0 100.0 97.5 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00095 69 974 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00008 113378 113852 mphB 0/0 99.6 96.6 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00034 6455 8203 msbA 0/0 100.0 99.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00005 156039 157007 pmrF 0/0 100.0 98.1 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00072 1652 2491 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00078 704 1519 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00082 1835 2695 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00002 137275 138762 tolC 0/0 100.0 98.5 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00005 92900 94543 yojI 0/0 100.0 97.5 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00080 35 895 (AGly)aac3-IId 0/0 100 99.9 EU022314:1-861 (AGly)aac3-IId NA
contig00072 3038 3826 (AGly)aadA5 0/0 100 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00081 1610 2413 (AGly)strA 0/0 100 100.0 AB366441:22458-23261 (AGly)strA NA
contig00081 774 1610 (AGly)strB 0/0 100 99.9 FJ474091:264-1100 (AGly)strB NA
contig00042 27940 29244 (Bla)AmpC1_Ecoli 0/0 100 96.0 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00004 124371 125504 (Bla)AmpC2_Ecoli 0/0 100 97.7 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00007 24730 25887 (Bla)ampH_Ecoli 0/0 100 96.8 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00032 28202 29077 (Bla)blaCTX-M-14 0/0 100 100.0 AF252622:1741-2616 (Bla)blaCTX-M-14 NA
contig00082 1835 2695 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00011 50375 52276 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 99.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00095 69 974 (MLS)mph(A) 0/0 100 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00072 1652 2491 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00078 704 1519 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00072 3957 4430 (Tmt)dfrA17 0/0 100 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00080 35 895 aac(3)-IId 0/0 100 100.0 NG_047251.1 aminoglycoside N-acetyltransferase AAC(3)-IId GENTAMICIN
contig00072 3038 3826 aadA5 0/0 100 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00081 1610 2437 aph(3’’)-Ib 0/0 100 99.9 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00081 774 1610 aph(6)-Id 0/0 100 99.9 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00032 28202 29077 blaCTX-M-14 0/0 100 100.0 NG_048929.1 class A extended-spectrum beta-lactamase CTX-M-14 CEPHALOSPORIN
contig00004 124371 125504 blaEC-8 0/0 100 98.2 NG_049086.1 cephalosporin-hydrolyzing class C beta-lactamase EC-8 CEPHALOSPORIN
contig00082 1835 2695 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00072 3957 4430 dfrA17 0/0 100 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00095 69 990 mph(A) 1/1 100 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00072 1652 2491 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00078 704 1519 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00080 35 895 AAC3 0/0 100.0 100.0 MEG_64 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00043 16154 17347 ACRA 0/0 100.0 99.2 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00043 12982 16131 ACRB 0/0 100.0 99.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00008 134559 137672 ACRD 0/0 100.0 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00017 83805 84962 ACRE 0/0 100.0 98.4 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00017 84974 88078 ACRF 0/0 100.0 97.8 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00017 82744 83406 ACRS 0/0 100.0 98.9 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00007 24730 25887 AMPH 0/0 100.0 96.8 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00072 3038 3826 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00081 1610 2437 APH3-DPRIME 0/0 100.0 99.9 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00081 774 1610 APH6 0/0 100.0 99.9 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00033 11265 13117 ASMA 0/0 100.0 98.3 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00002 115744 116563 BACA 0/0 99.8 96.7 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00025 10839 11560 BAER 0/0 99.9 98.1 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00025 9439 10842 BAES 0/0 100.0 96.4 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00005 66439 67629 BCR 0/0 100.0 97.5 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00004 124371 125504 BLAEC 0/0 100.0 98.2 MEG_1278 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00018 22021 22719 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00018 22716 24089 CPXAR 0/0 100.0 98.8 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00009 15391 16023 CRP 0/0 100.0 99.0 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00032 28196 29099 CTX 0/0 100.0 99.9 MEG_2401 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00072 3957 4430 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00026 16391 17563 EMRA 0/0 100.0 98.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00026 17580 19118 EMRB 0/0 100.0 98.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00015 87427 88617 EMRD 0/0 100.0 97.7 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00012 85378 86541 EMRK 0/0 100.0 98.0 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00026 15734 16264 EMRR 0/0 100.0 99.4 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00012 83840 85378 EMRY 0/0 100.0 97.5 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00004 80809 82452 EPTA 0/0 100.0 98.2 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00012 87576 91169 EVGS 0/0 100.0 97.3 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00028 54226 54954 GADW 0/0 100.0 97.8 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00028 55323 56147 GADX 0/0 100.0 94.3 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00047 28158 28571 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00011 7853 8530 KDPE 0/0 100.0 95.4 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00001 282280 282669 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00001 282684 283118 MARR 0/0 100.0 97.9 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00014 32368 33600 MDFA 0/0 100.0 98.2 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00025 579 1826 MDTA 0/0 100.0 97.4 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00025 1826 4948 MDTB 0/0 100.0 96.7 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00025 4949 8026 MDTC 0/0 100.0 97.1 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00028 49568 50725 MDTE 0/0 100.0 98.8 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00028 50750 53863 MDTF 0/0 100.0 98.5 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00016 2669 3895 MDTG 0/0 100.0 98.7 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00023 69659 70867 MDTH 0/0 100.0 97.8 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00001 243783 244112 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00001 243431 243796 MDTJ 0/0 100.0 98.1 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00001 172381 173753 MDTK 0/0 99.9 98.2 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00004 57173 58204 MDTN 0/0 100.0 96.4 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00004 55122 57173 MDTO 0/0 100.0 96.3 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00004 53659 55125 MDTP 0/0 100.0 97.5 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00095 69 990 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00008 113378 113852 MPHB 0/0 99.6 96.6 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00034 6455 8203 MSBA 0/0 100.0 99.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00011 50375 52276 PBP2 0/0 100.0 99.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00042 27940 29244 PBP4B 0/0 100.0 96.0 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00005 156039 157007 PMRF 0/0 100.0 98.1 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00003 232638 233507 ROBA 0/0 100.0 99.5 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00004 31693 32015 SOXS 0/0 99.7 97.5 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00072 1525 2492 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00078 704 1519 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00082 1817 3062 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00005 92900 94543 YOGI 0/0 100.0 97.5 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID045
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00068 391 1266 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00091 91 732 catA2_1 0/0 100.0 96.0 X53796 catA2 Chloramphenicol
contig00066 7607 7993 fosA7_1 0/0 91.5 93.5 LAPJ01000014 fosA7 Fosfomycin
contig00030 29805 31037 mdf(A)_1 0/0 100.0 98.4 Y08743 mdf(A)
contig00072 208 864 qnrS1_1 0/0 100.0 100.0 AB187515 qnrS1 Ciprofloxacin
contig00062 754 2000 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00007 143948 147097 acrB 0/0 100.0 99.2 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00008 135915 139028 acrD 0/0 100.0 98.6 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00005 203227 204384 acrE 0/0 100.0 98.8 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00005 204396 207500 acrF 0/0 100.0 99.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00005 202166 202828 acrS 0/0 100.0 99.1 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00013 123262 124081 bacA 0/0 99.8 98.5 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00053 10682 11404 baeR 0/0 100.0 99.5 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00053 9282 10685 baeS 0/0 100.0 96.6 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00091 91 732 catII_from_Escherichia_coli_K-12 0/0 100.0 96.0 X53796.1:186-828 catII is a chloramphenicol acetyltransferase. This particular catII is found in E.coli K-12. Confers resistance to chloramphenicol. phenicol
contig00020 22613 23986 cpxA 0/0 100.0 98.5 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00002 267478 268110 CRP 0/0 100.0 99.0 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00068 391 1266 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00051 17471 18643 emrA 0/0 100.0 98.1 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00051 18660 20198 emrB 0/0 100.0 99.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00027 9379 10434 emrK 0/0 100.0 99.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00051 16814 17344 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00027 7841 9379 emrY 0/0 100.0 98.2 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00001 167186 168829 eptA 0/0 100.0 99.3 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00007 147120 148313 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00001 123829 124962 Escherichia_coli_ampC 0/0 100.0 97.7 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00008 170346 171650 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00007 55729 56886 Escherichia_coli_ampH 0/0 100.0 98.7 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00030 29805 31037 Escherichia_coli_mdfA 0/0 100.0 96.8 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00027 10958 11572 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00027 11577 15170 evgS 0/0 100.0 99.1 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00066 7607 7993 FosA7 0/0 91.5 93.5 LAPJ01000014.1:36822-37245 fosA7 is an enzyme that confers resistance to fosfomycin in Escherichia coli by breaking the epoxide ring of the molecule. fosfomycin
contig00002 97574 98302 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00002 96382 97206 gadX 0/0 100.0 97.8 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00011 148523 148936 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00015 8002 8674 kdpE 0/0 99.3 97.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00016 97329 97712 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00053 422 1669 mdtA 0/0 100.0 97.6 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00053 1669 4791 mdtB 0/0 100.0 98.3 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00053 4792 7869 mdtC 0/0 100.0 98.1 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00002 101803 102960 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00002 98665 101778 mdtF 0/0 100.0 98.6 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00014 125708 126934 mdtG 0/0 100.0 99.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00014 115869 117077 mdtH 0/0 100.0 98.5 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00010 131603 132835 mdtM 0/0 100.0 96.0 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00001 191492 192523 mdtN 0/0 100.0 98.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00001 192523 194574 mdtO 0/0 100.0 98.8 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00001 194571 196037 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00008 113958 114432 mphB 0/0 99.6 97.5 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00004 86754 88502 msbA 0/0 100.0 99.3 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00003 124897 125865 pmrF 0/0 100.0 99.5 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00072 208 864 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00089 1043 1405 ramA 0/0 96.8 90.6 JQ727668:0-375 RamA (resistance antibiotic multiple) is a positive regulator of AcrAB-TolC and leads to high level multidrug resistance in Klebsiella pneumoniae Salmonella enterica and Enterobacter aerugenes increasing the expression of both the mar operon as well as AcrAB. RamA also decreases OmpF expression. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00062 754 2000 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00013 99416 100903 tolC 0/0 100.0 98.5 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00003 76214 77857 yojI 0/0 100.0 99.2 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00008 170346 171650 (Bla)AmpC1_Ecoli 0/0 100.0 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00001 123829 124962 (Bla)AmpC2_Ecoli 0/0 100.0 97.7 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00007 55729 56886 (Bla)ampH_Ecoli 0/0 100.0 98.7 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00068 391 1266 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00015 60462 62363 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 99.4 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00066 7607 7993 (Fcyn)FosA7 0/0 91.5 93.5 LAPJ01000014:36823-37245 (Fcyn)FosA7 NA
contig00072 208 864 (Flq)qnr-S1 0/0 100.0 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00091 91 732 (Phe)catA2 0/0 100.0 96.0 X53796:187-903 (Phe)catA2 NA
contig00062 754 2028 (Tet)tetA 0/0 100.0 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00062 73 723 (Tet)tetR 0/0 100.0 100.0 HF545434:53576-54226 (Tet)tetR NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00068 391 1266 blaCTX-M-15 0/0 100.0 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00001 123829 124962 blaEC-18 0/0 100.0 99.2 NG_049083.1 class C extended-spectrum beta-lactamase EC-18 CEPHALOSPORIN
contig00091 91 732 catA2 0/0 100.0 99.8 NG_047596.1 type A-2 chloramphenicol O-acetyltransferase CatII CHLORAMPHENICOL
contig00066 7607 7993 fosA7.5 0/0 91.5 100.0 NG_067231.1 fosfomycin resistance glutathione transferase FosA7.5 FOSFOMYCIN
contig00072 208 864 qnrS1 0/0 100.0 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig00062 829 2028 tet(A) 0/0 100.0 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00007 147120 148313 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00007 143948 147097 ACRB 0/0 100.0 99.2 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00008 135915 139028 ACRD 0/0 100.0 98.6 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00005 203227 204384 ACRE 0/0 100.0 98.8 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00005 204396 207500 ACRF 0/0 100.0 99.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00005 202166 202828 ACRS 0/0 100.0 99.1 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00007 55729 56886 AMPH 0/0 100.0 98.7 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00009 6961 8813 ASMA 0/0 100.0 98.2 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00013 123262 124081 BACA 0/0 99.8 98.8 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00053 10682 11404 BAER 0/0 100.0 99.5 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00053 9282 10685 BAES 0/0 100.0 96.6 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00003 49755 50945 BCR 0/0 100.0 98.1 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00001 123829 124962 BLAEC 0/0 100.0 99.2 MEG_1279 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00091 91 732 CATA 0/0 100.0 99.8 MEG_1568 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig00020 21918 22616 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00020 22613 23986 CPXAR 0/0 100.0 99.1 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00002 267478 268110 CRP 0/0 100.0 99.0 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00051 17471 18643 EMRA 0/0 100.0 98.1 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00051 18660 20198 EMRB 0/0 100.0 99.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00006 104253 105443 EMRD 0/0 100.0 99.9 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00027 9379 10542 EMRK 0/0 100.0 99.7 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00051 16814 17344 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00027 7841 9379 EMRY 0/0 100.0 98.3 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00001 167186 168829 EPTA 0/0 100.0 99.3 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00027 11577 15170 EVGS 0/0 100.0 99.1 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00066 7607 7993 FOSA 0/0 91.5 93.5 MEG_2988 Drugs:Fosfomycin:Fosfomycin_thiol_transferases:FOSA NA
contig00002 97574 98302 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00002 96382 97206 GADX 0/0 100.0 97.8 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00011 148523 148936 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00015 8002 8674 KDPE 0/0 99.3 97.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00016 97323 97712 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00016 96875 97309 MARR 0/0 100.0 97.7 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00030 29805 31037 MDFA 0/0 100.0 98.5 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00053 422 1669 MDTA 0/0 100.0 97.6 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00053 1669 4791 MDTB 0/0 100.0 98.3 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00053 4792 7869 MDTC 0/0 100.0 98.1 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00002 101803 102960 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00002 98665 101778 MDTF 0/0 100.0 98.6 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00014 125708 126934 MDTG 0/0 100.0 99.5 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00014 115869 117077 MDTH 0/0 100.0 98.5 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00023 32064 32393 MDTI 0/0 100.0 99.4 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00023 32380 32745 MDTJ 0/0 100.0 99.7 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00037 1343 2716 MDTK 0/0 100.0 99.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00010 131603 132835 MDTM 0/0 100.0 96.0 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00001 191492 192523 MDTN 0/0 100.0 98.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00001 192523 194574 MDTO 0/0 100.0 98.8 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00001 194571 196037 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00008 113958 114432 MPHB 0/0 99.6 97.5 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00004 86754 88502 MSBA 0/0 100.0 99.3 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00015 60462 62363 PBP2 0/0 100.0 99.4 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00008 170346 171650 PBP4B 0/0 100.0 98.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00003 124897 125865 PMRF 0/0 100.0 99.5 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00072 208 864 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00089 1043 1405 RAMA 0/0 96.8 90.6 MEG_6044 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:RAMA NA
contig00010 67934 68803 ROBA 0/0 100.0 99.2 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00001 217653 217976 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00062 754 2028 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00003 76214 77857 YOGI 0/0 100.0 99.2 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID047
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00111 1696 2556 aac(3)-IIa_1 0/0 100.0 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig00113 1540 2139 aac(6’)-Ib-cr_1 0/0 100.0 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00082 1308 2096 aadA5_1 0/0 100.0 100.0 AF137361 aadA5 Streptomycin
contig00088 3970 4773 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00088 3134 3970 aph(6)-Id_1 0/0 100.0 99.9 M28829 aph(6)-Id Streptomycin
contig00089 2404 3279 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00113 579 1409 blaOXA-1_1 0/0 100.0 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00082 704 1177 dfrA17_1 0/0 100.0 100.0 FJ460238 dfrA17 Trimethoprim
contig00015 32470 33702 mdf(A)_1 0/0 100.0 97.9 Y08743 mdf(A)
contig00133 69 990 mph(A)_2 1/1 100.0 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00082 2616 3482 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00088 4834 5649 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00088 909 2155 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00111 1696 2556 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00113 1540 2139 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00082 1308 2096 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00025 54140 57289 acrB 0/0 100.0 99.1 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00004 146537 149650 acrD 0/0 100.0 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00005 163425 164582 acrE 0/0 100.0 98.5 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00005 164594 167698 acrF 0/0 100.0 97.9 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00005 162364 163026 acrS 0/0 100.0 98.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00088 3970 4773 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00088 3134 3970 APH(6)-Id 0/0 100.0 99.8 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00008 114242 115061 bacA 0/0 99.8 98.5 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00001 99748 100469 baeR 0/0 99.9 98.2 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00001 98348 99751 baeS 0/0 100.0 97.7 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00020 22913 24286 cpxA 0/0 100.0 98.2 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00018 15385 16017 CRP 0/0 100.0 98.9 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00089 2404 3279 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00082 704 1177 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00009 58704 59876 emrA 0/0 100.0 98.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00009 59893 61431 emrB 0/0 100.0 98.6 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00001 414438 415493 emrK 0/0 100.0 98.0 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00009 58047 58577 emrR 0/0 100.0 99.4 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00001 412900 414438 emrY 0/0 100.0 97.7 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00011 100959 102602 eptA 0/0 100.0 97.8 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00025 57312 58505 Escherichia_coli_acrA 0/0 100.0 99.3 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00014 101671 102804 Escherichia_coli_ampC 0/0 100.0 98.0 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00074 8301 9599 Escherichia_coli_ampC1_beta-lactamase 0/0 99.5 96.1 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00016 14787 15944 Escherichia_coli_ampH 0/0 100.0 98.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00002 20788 21120 Escherichia_coli_emrE 0/0 100.0 91.9 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00015 32470 33702 Escherichia_coli_mdfA 0/0 100.0 96.3 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00001 416017 416631 evgA 0/0 100.0 99.2 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00001 416636 420229 evgS 0/0 100.0 96.8 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00012 56718 57446 gadW 0/0 100.0 95.5 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00012 55525 56349 gadX 0/0 100.0 94.8 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00050 21114 21527 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00056 7859 8536 kdpE 0/0 100.0 97.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00017 76818 77201 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00001 89488 90735 mdtA 0/0 100.0 96.9 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00001 90735 93857 mdtB 0/0 100.0 96.8 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00001 93858 96935 mdtC 0/0 100.0 97.1 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00012 60947 62104 mdtE 0/0 100.0 98.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00012 57809 60922 mdtF 0/0 100.0 98.4 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00021 38513 39739 mdtG 0/0 100.0 98.2 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00021 28674 29882 mdtH 0/0 100.0 98.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00011 77310 78341 mdtN 0/0 100.0 96.4 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00011 75259 77310 mdtO 0/0 100.0 97.4 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00011 73796 75262 mdtP 0/0 100.0 96.7 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00133 69 974 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00004 125356 125830 mphB 0/0 99.6 96.2 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00010 50246 51994 msbA 0/0 100.0 98.7 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00113 579 1409 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00001 299927 300895 pmrF 0/0 100.0 98.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00082 2643 3482 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00088 4834 5649 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00088 909 2155 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00008 90475 91962 tolC 0/0 100.0 100.0 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00001 33341 34507 ugd 0/0 100.0 96.9 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00001 238174 239817 yojI 0/0 100.0 98.3 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00111 1696 2556 (AGly)aac3-IIa 0/0 100.0 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig00082 1308 2096 (AGly)aadA5 0/0 100.0 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00088 3970 4773 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00088 3134 3970 (AGly)strB 0/0 100.0 99.9 FJ474091:264-1100 (AGly)strB NA
contig00074 8301 9599 (Bla)AmpC1_Ecoli 0/0 99.5 96.1 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00014 101671 102804 (Bla)AmpC2_Ecoli 0/0 100.0 98.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00016 14787 15944 (Bla)ampH_Ecoli 0/0 100.0 98.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00089 2404 3279 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00113 579 1409 (Bla)blaOXA-1 0/0 100.0 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00006 28477 30378 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 99.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00133 69 974 (MLS)mph(A) 0/0 100.0 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00082 2643 3482 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00088 4834 5649 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00088 881 2155 (Tet)tetA 0/0 100.0 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00088 2186 2812 (Tet)tetR 1/24 96.3 96.3 HF545434:53576-54226 (Tet)tetR NA
contig00082 704 1177 (Tmt)dfrA17 0/0 100.0 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00111 1696 2556 aac(3)-IIe 0/0 100 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig00113 1540 2094 aac(6’)-Ib-D181Y 0/0 100 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00082 1308 2096 aadA5 0/0 100 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00088 3970 4797 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00088 3134 3970 aph(6)-Id 0/0 100 100.0 NG_047466.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00089 2404 3279 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00014 101671 102804 blaEC-8 0/0 100 98.7 NG_049086.1 cephalosporin-hydrolyzing class C beta-lactamase EC-8 CEPHALOSPORIN
contig00113 579 1409 blaOXA-1 0/0 100 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00082 704 1177 dfrA17 0/0 100 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00133 69 990 mph(A) 1/1 100 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00082 2643 3482 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00088 4834 5649 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00088 881 2080 tet(A) 0/0 100 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00111 1696 2556 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00025 57312 58505 ACRA 0/0 100.0 99.3 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00025 54140 57289 ACRB 0/0 100.0 99.1 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00004 146537 149650 ACRD 0/0 100.0 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00005 163425 164582 ACRE 0/0 100.0 98.5 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00005 164594 167698 ACRF 0/0 100.0 97.9 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00005 162364 163026 ACRS 0/0 100.0 98.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00016 14787 15944 AMPH 0/0 100.0 98.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00082 1308 2096 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00088 3970 4797 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00088 3134 3970 APH6 0/0 100.0 100.0 MEG_1084 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00001 74974 76826 ASMA 0/0 100.0 98.2 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00008 114242 115061 BACA 0/0 99.8 98.8 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00001 99748 100469 BAER 0/0 99.9 98.2 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00001 98348 99751 BAES 0/0 100.0 97.7 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00001 211714 212904 BCR 0/0 100.0 96.0 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00014 101671 102804 BLAEC 0/0 100.0 98.7 MEG_1278 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00020 22218 22916 CPXAR 0/0 100.0 99.3 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00020 22913 24286 CPXAR 0/0 100.0 98.2 MEG_2119 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00018 15385 16017 CRP 0/0 100.0 98.9 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00082 704 1177 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00009 58704 59876 EMRA 0/0 100.0 98.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00009 59893 61431 EMRB 0/0 100.0 98.6 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00013 24887 26077 EMRD 0/0 100.0 97.6 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00001 414438 415601 EMRK 0/0 100.0 98.2 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00009 58047 58577 EMRR 0/0 100.0 99.4 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00001 412900 414438 EMRY 0/0 100.0 97.7 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00011 100959 102602 EPTA 0/0 100.0 97.8 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00001 416636 420229 EVGS 0/0 100.0 97.2 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00012 56718 57446 GADW 0/0 100.0 97.4 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00012 55525 56349 GADX 0/0 100.0 94.8 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00050 21114 21527 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00056 7859 8536 KDPE 0/0 100.0 97.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00017 76812 77201 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00017 76363 76797 MARR 0/0 100.0 97.9 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00015 32470 33702 MDFA 0/0 100.0 98.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00001 89488 90735 MDTA 0/0 100.0 96.9 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00001 90735 93857 MDTB 0/0 100.0 96.8 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00001 93858 96935 MDTC 0/0 100.0 97.1 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00012 60947 62104 MDTE 0/0 100.0 98.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00012 57809 60922 MDTF 0/0 100.0 98.4 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00021 38513 39739 MDTG 0/0 100.0 98.8 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00021 28674 29882 MDTH 0/0 100.0 98.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00027 51282 51611 MDTI 0/0 100.0 99.4 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00027 50930 51295 MDTJ 0/0 100.0 98.1 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00002 286055 287427 MDTK 0/0 99.9 97.8 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00011 77310 78341 MDTN 0/0 100.0 96.4 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00011 75259 77310 MDTO 0/0 100.0 97.4 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00011 73796 75262 MDTP 0/0 100.0 96.7 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00133 69 990 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00004 125356 125830 MPHB 0/0 99.6 96.2 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00010 50246 51994 MSBA 0/0 100.0 98.7 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00002 20788 21120 MVRC 0/0 100.0 91.9 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00113 579 1409 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00006 28477 30378 PBP2 0/0 100.0 99.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00074 8301 9599 PBP4B 0/0 99.5 96.1 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00001 299927 300895 PMRF 0/0 100.0 98.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00071 5457 6326 ROBA 0/0 100.0 99.3 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00011 51831 52153 SOXS 0/0 99.7 97.8 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00082 2642 3609 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00088 4834 5649 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00088 881 2155 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00001 33341 34507 UGD 0/0 100.0 96.9 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00001 238174 239817 YOGI 0/0 100.0 98.3 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID050
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00094 1694 2554 aac(3)-IIa_1 0/0 100 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig00096 1539 2138 aac(6’)-Ib-cr_1 0/0 100 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00086 1702 2490 aadA5_1 0/0 100 100.0 AF137361 aadA5 Streptomycin
contig00078 5421 6200 aph(3’’)-Ib_5 0/0 97 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00078 4585 5421 aph(6)-Id_1 0/0 100 100.0 M28829 aph(6)-Id Streptomycin
contig00085 1224 2099 blaCTX-M-15_1 0/0 100 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00096 578 1408 blaOXA-1_1 0/0 100 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00086 2621 3094 dfrA17_1 0/0 100 100.0 FJ460238 dfrA17 Trimethoprim
contig00006 27290 28522 mdf(A)_1 0/0 100 99.9 Y08743 mdf(A)
contig00086 316 1182 sul1_5 0/0 100 99.9 EU780013 sul1 Sulfamethoxazole
contig00078 85 900 sul2_2 0/0 100 100.0 AY034138 sul2 Sulfamethoxazole
contig00080 1998 3203 tet(B)_2 0/0 100 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00094 1694 2554 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00096 1539 2138 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00086 1702 2490 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00001 40681 43830 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00005 147293 150406 acrD 0/0 100.0 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00070 5854 8958 acrF 0/0 100.0 100.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00034 600 1262 acrS 0/0 100.0 100.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00078 5421 6200 APH(3’’)-Ib 0/0 97.0 99.7 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00078 4585 5421 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00002 70353 71172 bacA 0/0 99.8 98.5 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00052 10967 11689 baeR 0/0 100.0 99.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00052 9567 10970 baeS 0/0 100.0 98.7 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00012 61576 62949 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00009 15387 16019 CRP 0/0 100.0 99.7 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00085 1224 2099 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00086 2621 3094 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00010 58703 59875 emrA 0/0 100.0 97.9 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00010 59892 61430 emrB 0/0 100.0 98.6 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00003 178484 179539 emrK 0/0 100.0 98.0 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00010 58046 58576 emrR 0/0 100.0 99.4 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00003 176946 178484 emrY 0/0 100.0 97.7 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00007 81590 83233 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00001 39465 40658 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00007 38239 39372 Escherichia_coli_ampC 0/0 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00005 182292 183596 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 95.9 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00001 128797 129954 Escherichia_coli_ampH 0/0 100.0 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00006 27290 28522 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00003 180063 180677 evgA 0/0 100.0 99.2 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00003 180682 184275 evgS 0/0 100.0 96.8 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00038 1784 2512 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00038 592 1416 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00033 5297 5710 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00013 8068 8745 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00022 30980 31363 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00052 707 1954 mdtA 0/0 100.0 98.1 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00052 1954 5076 mdtB 0/0 100.0 99.9 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00052 5077 8154 mdtC 0/0 100.0 97.7 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00038 6013 7170 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00038 2875 5988 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00032 29397 30623 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00032 19561 20769 mdtH 0/0 100.0 99.9 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00019 70066 71298 mdtM 0/0 100.0 96.3 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00007 112971 114002 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00007 114002 116053 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00007 116050 117516 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00005 126112 126586 mphB 0/0 99.6 96.2 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00004 86644 88392 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00096 578 1408 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00003 63971 64939 pmrF 0/0 100.0 98.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00086 316 1155 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00078 85 900 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00080 1998 3203 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00002 46586 48073 tolC 0/0 100.0 99.9 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00003 2095 3738 yojI 0/0 100.0 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00094 1694 2554 (AGly)aac3-IIa 0/0 100 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig00086 1702 2490 (AGly)aadA5 0/0 100 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00078 5421 6200 (AGly)strA 0/0 97 99.9 AB366441:22458-23261 (AGly)strA NA
contig00078 4585 5421 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00005 182292 183596 (Bla)AmpC1_Ecoli 0/0 100 95.9 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00007 38239 39372 (Bla)AmpC2_Ecoli 0/0 100 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00001 128797 129954 (Bla)ampH_Ecoli 0/0 100 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00085 1224 2099 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00096 578 1408 (Bla)blaOXA-1 0/0 100 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00013 60155 62056 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00086 316 1155 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00078 85 900 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00080 1998 3203 (Tet)tetB 0/0 100 99.7 AB089594:1-1206 (Tet)tetB NA
contig00086 2621 3094 (Tmt)dfrA17 0/0 100 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00094 1694 2554 aac(3)-IIe 0/0 100.0 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig00096 1539 2093 aac(6’)-Ib-D181Y 0/0 100.0 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00086 1702 2490 aadA5 0/0 100.0 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00078 5421 6200 aph(3’’)-Ib 0/0 94.2 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00078 4585 5421 aph(6)-Id 0/0 100.0 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00085 1224 2099 blaCTX-M-15 0/0 100.0 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00007 38239 39372 blaEC-15 0/0 100.0 98.5 NG_049081.1 class C extended-spectrum beta-lactamase EC-15 CEPHALOSPORIN
contig00096 578 1408 blaOXA-1 0/0 100.0 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00086 2621 3094 dfrA17 0/0 100.0 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00086 316 1155 sul1 0/0 100.0 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00078 85 900 sul2 0/0 100.0 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00080 1998 3203 tet(B) 0/0 100.0 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00094 1694 2554 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00001 39465 40658 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00001 40681 43830 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00005 147293 150406 ACRD 0/0 100.0 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00070 5854 8958 ACRF 0/0 100.0 100.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00034 600 1262 ACRS 0/0 100.0 100.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00001 128797 129954 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00086 1702 2490 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00078 5421 6200 APH3-DPRIME 0/0 94.2 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00078 4585 5421 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00041 25297 27149 ASMA 0/0 100.0 97.2 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00002 70353 71172 BACA 0/0 99.8 98.8 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00052 10967 11689 BAER 0/0 100.0 99.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00052 9567 10970 BAES 0/0 100.0 98.7 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00017 67338 68528 BCR 0/0 100.0 100.0 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00007 38239 39372 BLAEC 0/0 100.0 98.5 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00012 60881 61579 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00012 61576 62949 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00009 15387 16019 CRP 0/0 100.0 99.7 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00104 62 1004 CTX 0/0 100.0 98.2 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00086 2621 3094 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00010 58703 59875 EMRA 0/0 100.0 97.9 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00010 59892 61430 EMRB 0/0 100.0 98.6 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00036 43241 44431 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00003 178484 179647 EMRK 0/0 100.0 98.2 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00010 58046 58576 EMRR 0/0 100.0 99.4 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00003 176946 178484 EMRY 0/0 100.0 97.7 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00007 81590 83233 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00003 180682 184275 EVGS 0/0 100.0 97.2 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00038 1784 2512 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00038 592 1416 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00033 5297 5710 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00013 8068 8745 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00022 30974 31363 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00022 30526 30960 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00006 27290 28522 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00052 707 1954 MDTA 0/0 100.0 98.1 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00052 1954 5076 MDTB 0/0 100.0 99.9 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00052 5077 8154 MDTC 0/0 100.0 97.7 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00038 6013 7170 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00038 2875 5988 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00032 29397 30623 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00032 19561 20769 MDTH 0/0 100.0 99.9 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00022 63756 64085 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00022 64072 64437 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00021 26477 27850 MDTK 0/0 100.0 100.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00019 70066 71298 MDTM 0/0 100.0 96.3 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00007 112971 114002 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00007 114002 116053 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00007 116050 117516 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00005 126112 126586 MPHB 0/0 99.6 96.2 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00004 86644 88392 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00096 578 1408 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00013 60155 62056 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00005 182292 183596 PBP4B 0/0 100.0 95.9 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00003 63971 64939 PMRF 0/0 100.0 98.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00019 21724 22593 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00007 139132 139455 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00086 189 1156 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00078 85 900 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00080 1998 3203 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00080 3997 4413 TETD 0/0 100.0 100.0 MEG_7070 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETD NA
contig00003 2095 3738 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID051
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00076 6262 7122 aac(3)-IId_1 0/0 100.0 99.9 EU022314 aac(3)-IId Gentamicin, Tobramycin
contig00003 23454 24329 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00750 109 969 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig03356 161 634 dfrA17_1 0/0 100.0 100.0 FJ460238 dfrA17 Trimethoprim
contig00666 1490 2063 dfrA7_5 3/4 100.0 98.8 AJ419170 dfrA7 Trimethoprim
contig01612 42 551 dfrA8_1 0/0 100.0 100.0 U10186 dfrA8 Trimethoprim
contig00512 263 1026 erm(B)_18 2/2 100.0 99.0 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig00666 180 1046 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00905 410 1656 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
contig00794 415 1620 tet(B)_2 0/0 100.0 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00076 6262 7122 AAC(3)-IId 0/0 100.0 99.9 EU022314.1:0-861 AAC(3)-IId is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00816 1149 1811 acrS 0/0 100.0 97.9 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00173 2765 4168 baeS 0/0 100.0 90.1 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig03015 101 719 CRP 0/0 97.8 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00003 23454 24329 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig03356 161 634 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00666 1590 2063 dfrA7 0/0 100.0 100.0 FJ854362:2338-2812 dfrA7 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig01612 42 551 dfrA8 0/0 100.0 100.0 KJ174469:710-1220 dfrA8 is a transposon-encoded dihydrofolate reductase found in Salmonella enterica diaminopyrimidine
contig01821 312 842 emrR 0/0 100.0 99.2 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00512 289 1034 ErmB 1/1 99.9 99.2 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig00830 225 1418 Escherichia_coli_acrA 0/0 100.0 98.9 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig01727 66 1123 Escherichia_coli_ampC 0/0 93.3 98.2 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00385 1398 2702 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 95.4 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00665 614 946 Escherichia_coli_emrE 0/0 100.0 91.9 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00128 185 3778 evgS 0/0 100.0 96.3 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig01705 608 1021 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00087 5744 6421 kdpE 0/0 100.0 96.6 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00670 39 1271 mdtM 0/0 100.0 96.3 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00012 4008 4484 mphB 0/0 100.0 98.1 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00666 180 1019 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00750 109 969 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00905 410 1656 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00794 415 1620 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00076 6262 7122 (AGly)aac3-IId 0/0 100.0 99.9 EU022314:1-861 (AGly)aac3-IId NA
contig00385 1398 2702 (Bla)AmpC1_Ecoli 0/0 100.0 95.4 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig01727 66 1123 (Bla)AmpC2_Ecoli 0/0 93.3 98.2 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00003 23454 24329 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00750 109 969 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00512 289 1026 (MLS)erm(B) 0/0 100.0 99.6 M11180:714-1451 (MLS)erm(B) NA
contig00666 180 1019 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00905 410 1684 (Tet)tetA 0/0 100.0 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00794 415 1620 (Tet)tetB 0/0 100.0 99.7 AB089594:1-1206 (Tet)tetB NA
contig03356 161 634 (Tmt)dfrA17 0/0 100.0 100.0 AB126604:98-571 (Tmt)dfrA17 NA
contig01612 42 551 (Tmt)dfrA8 0/0 100.0 100.0 U10186:711-1220 (Tmt)dfrA8 NA
contig00666 1590 2063 (Tmt)dhfr7 0/0 100.0 100.0 X58425:594-1067 (Tmt)dhfr7 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00076 6262 7122 aac(3)-IId 0/0 100.0 100.0 NG_047251.1 aminoglycoside N-acetyltransferase AAC(3)-IId GENTAMICIN
contig00003 23454 24329 blaCTX-M-15 0/0 100.0 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig01727 66 1123 blaEC-19 0/0 93.3 99.6 NG_049084.1 class C extended-spectrum beta-lactamase EC-19 CEPHALOSPORIN
contig00750 109 969 blaTEM-1 0/0 100.0 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig03356 161 634 dfrA17 0/0 100.0 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00666 1590 2063 dfrA7 0/0 100.0 100.0 NG_047737.1 trimethoprim-resistant dihydrofolate reductase DfrA7 TRIMETHOPRIM
contig01612 42 551 dfrA8 0/0 100.0 100.0 NG_047741.1 trimethoprim-resistant dihydrofolate reductase DfrA8 TRIMETHOPRIM
contig00512 289 1026 erm(B) 0/0 100.0 99.9 NG_047804.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) MACROLIDE
contig00666 180 1019 sul1 0/0 100.0 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00905 485 1684 tet(A) 0/0 100.0 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
contig00794 415 1620 tet(B) 0/0 100.0 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00076 6262 7122 AAC3 0/0 100.0 100.0 MEG_64 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00830 225 1418 ACRA 0/0 100.0 98.9 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00816 1149 1811 ACRS 0/0 100.0 97.9 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00173 2765 4168 BAES 0/0 100.0 90.1 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig01259 1 1124 BCR 0/0 94.4 96.6 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig01727 66 1123 BLAEC 0/0 93.3 99.6 MEG_1275 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig03015 101 719 CRP 0/0 97.8 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00666 1590 2063 DFRA 0/0 100.0 100.0 MEG_2548 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig01612 42 551 DFRA 0/0 100.0 100.0 MEG_2553 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig03356 161 634 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig01821 312 842 EMRR 0/0 100.0 99.2 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00512 263 1026 ERMB 2/2 100.0 99.0 MEG_2801 Drugs:MLS:23S_rRNA_methyltransferases:ERMB NA
contig00128 185 3778 EVGS 0/0 100.0 97.3 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig01705 608 1021 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00087 5744 6421 KDPE 0/0 100.0 96.6 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00670 39 1271 MDTM 0/0 100.0 96.3 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00012 4008 4484 MPHB 0/0 100.0 98.1 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00665 614 946 MVRC 0/0 100.0 91.9 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00385 1398 2702 PBP4B 0/0 100.0 95.4 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00666 53 1020 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00750 91 1336 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00905 410 1684 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00794 415 1620 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
ID052
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00152 71 931 blaSHV-12_1 0/0 100 100.0 KF976405 blaSHV-12 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00027 64704 65564 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00087 1809 2282 dfrA5_1 0/0 100 100.0 X12868 dfrA5 Trimethoprim
contig00127 264 1027 erm(B)_18 2/2 100 99.0 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig00007 32486 33718 mdf(A)_1 0/0 100 98.0 Y08743 mdf(A)
contig00150 69 999 mph(A)_2 2/10 100 98.6 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00087 445 1311 sul1_5 0/0 100 99.9 EU780013 sul1 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00006 166026 169175 acrB 0/0 100.0 99.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00025 11499 14612 acrD 0/0 100.0 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00029 45356 46513 acrE 0/0 100.0 97.5 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00029 46525 49629 acrF 0/0 100.0 97.8 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00029 44295 44957 acrS 0/0 100.0 98.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00001 140891 141710 bacA 0/0 99.8 97.4 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00004 20578 21300 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00004 19178 20581 baeS 0/0 100.0 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00011 63633 65006 cpxA 0/0 100.0 98.3 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00002 280114 280746 CRP 0/0 100.0 98.9 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00087 1809 2282 dfrA5 0/0 100.0 100.0 DQ278190:0-474 dfrA5 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00050 23051 24223 emrA 0/0 100.0 97.4 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00050 24240 25778 emrB 0/0 100.0 98.2 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00033 19802 20857 emrK 0/0 100.0 98.4 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00050 22394 22924 emrR 0/0 100.0 99.8 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00033 18264 19802 emrY 0/0 100.0 97.5 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00010 117851 119494 eptA 0/0 100.0 99.2 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00127 290 1035 ErmB 1/1 99.9 99.2 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig00006 169198 170391 Escherichia_coli_acrA 0/0 100.0 99.1 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00008 160219 161352 Escherichia_coli_ampC 0/0 100.0 98.1 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00006 76537 77694 Escherichia_coli_ampH 0/0 100.0 98.6 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00007 32486 33718 Escherichia_coli_mdfA 0/0 100.0 96.5 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00033 21381 21995 evgA 0/0 100.0 99.5 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00033 22000 25593 evgS 0/0 100.0 96.7 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00002 100122 100850 gadW 0/0 100.0 95.5 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00002 98929 99753 gadX 0/0 100.0 94.3 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00054 21273 21686 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00009 7766 8441 kdpE 0/0 99.7 95.7 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00035 42525 42908 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00004 10318 11565 mdtA 0/0 100.0 100.0 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00004 11565 14687 mdtB 0/0 100.0 99.8 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00004 14688 17765 mdtC 0/0 100.0 99.8 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00002 104351 105508 mdtE 0/0 100.0 98.5 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00002 101213 104326 mdtF 0/0 100.0 98.5 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00039 21227 22453 mdtG 0/0 100.0 97.8 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00039 31084 32292 mdtH 0/0 100.0 98.3 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00066 259 1491 mdtM 0/0 100.0 96.3 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00010 94231 95262 mdtN 0/0 100.0 96.9 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00010 92180 94231 mdtO 0/0 100.0 96.4 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00010 90717 92183 mdtP 0/0 100.0 97.6 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00150 69 971 mphA 0/0 99.7 99.9 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00023 9166 9640 mphB 0/0 99.6 96.6 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00020 50226 51974 msbA 0/0 100.0 98.7 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00017 5950 6918 pmrF 0/0 100.0 98.7 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00152 71 931 SHV-134 0/0 100.0 99.9 HM559945:0-861 SHV-134 is an extended-spectrum beta-lactamase. carbapenem, cephalosporin, penam
contig00087 445 1284 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00027 64704 65564 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00001 117379 118866 tolC 0/0 100.0 98.3 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00045 30809 31975 ugd 0/0 100.0 99.9 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00004 159132 160775 yojI 0/0 100.0 96.6 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00008 160219 161352 (Bla)AmpC2_Ecoli 0/0 100.0 98.1 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00006 76537 77694 (Bla)ampH_Ecoli 0/0 100.0 98.6 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00152 71 931 (Bla)blaSHV-12 0/0 100.0 100.0 FJ685654:24-860 (Bla)blaSHV-12 NA
contig00027 64704 65564 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00009 46838 48739 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 99.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00127 290 1027 (MLS)erm(B) 0/0 100.0 99.6 M11180:714-1451 (MLS)erm(B) NA
contig00150 69 971 (MLS)mph(A) 0/0 99.7 99.9 DQ445270:1626-2531 (MLS)mph(A) NA
contig00087 445 1284 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00087 1809 2282 (Tmt)dfrA5 0/0 100.0 100.0 X12868:1306-1779 (Tmt)dfrA5 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00008 160219 161352 blaEC-8 0/0 100 99.8 NG_049086.1 cephalosporin-hydrolyzing class C beta-lactamase EC-8 CEPHALOSPORIN
contig00152 71 931 blaSHV-12 0/0 100 100.0 NG_050590.1 class A extended-spectrum beta-lactamase SHV-12 CEPHALOSPORIN
contig00027 64704 65564 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00087 1809 2282 dfrA5 0/0 100 100.0 NG_051699.1 trimethoprim-resistant dihydrofolate reductase DfrA5 TRIMETHOPRIM
contig00127 290 1027 erm(B) 0/0 100 99.9 NG_047804.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) MACROLIDE
contig00150 69 999 mph(A) 2/10 100 98.6 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00087 445 1284 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00006 169198 170391 ACRA 0/0 100.0 99.1 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00006 166026 169175 ACRB 0/0 100.0 99.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00025 11499 14612 ACRD 0/0 100.0 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00029 45356 46513 ACRE 0/0 100.0 97.5 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00029 46525 49629 ACRF 0/0 100.0 97.8 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00029 44295 44957 ACRS 0/0 100.0 98.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00006 76537 77694 AMPH 0/0 100.0 98.6 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00076 10489 12342 ASMA 0/0 100.0 97.7 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00001 140891 141710 BACA 0/0 99.8 97.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00004 20578 21300 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00004 19178 20581 BAES 0/0 100.0 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00004 132672 133862 BCR 0/0 100.0 95.2 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00008 160219 161352 BLAEC 0/0 100.0 99.8 MEG_1278 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00011 62938 63636 CPXAR 0/0 100.0 99.6 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00011 63633 65006 CPXAR 0/0 100.0 98.5 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00002 280114 280746 CRP 0/0 100.0 98.9 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00087 1809 2282 DFRA 0/0 100.0 100.0 MEG_2546 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00050 23051 24223 EMRA 0/0 100.0 97.4 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00050 24240 25778 EMRB 0/0 100.0 98.2 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00056 1479 2669 EMRD 0/0 100.0 97.2 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00033 19802 20965 EMRK 0/0 100.0 98.5 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00050 22394 22924 EMRR 0/0 100.0 99.8 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00033 18264 19802 EMRY 0/0 100.0 97.5 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00010 117851 119494 EPTA 0/0 100.0 99.2 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00127 264 1027 ERMB 2/2 100.0 99.0 MEG_2801 Drugs:MLS:23S_rRNA_methyltransferases:ERMB NA
contig00033 22000 25593 EVGS 0/0 100.0 97.3 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00002 100122 100850 GADW 0/0 100.0 97.7 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00002 98929 99753 GADX 0/0 100.0 94.3 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00054 21273 21686 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00009 7766 8441 KDPE 0/0 99.7 95.7 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00035 42519 42908 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00035 42070 42504 MARR 0/0 100.0 98.2 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00007 32486 33718 MDFA 0/0 100.0 98.1 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00004 10318 11565 MDTA 0/0 100.0 100.0 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00004 11565 14687 MDTB 0/0 100.0 99.8 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00004 14688 17765 MDTC 0/0 100.0 99.8 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00002 104351 105508 MDTE 0/0 100.0 98.5 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00002 101213 104326 MDTF 0/0 100.0 98.5 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00039 21227 22453 MDTG 0/0 100.0 98.2 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00039 31084 32292 MDTH 0/0 100.0 98.3 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00041 30311 30640 MDTI 0/0 100.0 99.4 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00041 30627 30992 MDTJ 0/0 100.0 98.6 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00003 194899 196271 MDTK 0/0 99.9 98.4 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00066 259 1491 MDTM 0/0 100.0 96.3 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00010 94231 95262 MDTN 0/0 100.0 96.9 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00010 92180 94231 MDTO 0/0 100.0 96.4 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00010 90717 92183 MDTP 0/0 100.0 97.6 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00150 69 999 MPHA 2/10 100.0 98.6 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00023 9166 9640 MPHB 0/0 99.6 96.6 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00020 50226 51974 MSBA 0/0 100.0 98.7 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00009 46838 48739 PBP2 0/0 100.0 99.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00017 5950 6918 PMRF 0/0 100.0 98.7 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00005 151816 152685 ROBA 0/0 100.0 97.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00152 25 1028 SHV 0/0 99.7 98.9 MEG_6428 Drugs:betalactams:Class_A_betalactamases:SHV NA
contig00010 68752 69074 SOXS 0/0 99.7 98.1 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00087 318 1285 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00027 64337 65582 TEM 0/0 98.3 99.3 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00045 30809 31975 UGD 0/0 100.0 99.9 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00004 159132 160775 YOGI 0/0 100.0 96.6 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID057
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00031 21738 22613 blaCTX-M-15_1 0/0 100 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00061 1218 2450 mdf(A)_1 0/0 100 99.1 Y08743 mdf(A)
contig00031 27254 27910 qnrS1_1 0/0 100 100.0 AB187515 qnrS1 Ciprofloxacin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00005 124681 127830 acrB 0/0 100.0 99.1 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00035 17245 20358 acrD 0/0 100.0 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00029 8449 9606 acrE 0/0 100.0 99.0 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00029 5333 8437 acrF 0/0 100.0 99.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00029 10005 10667 acrS 0/0 100.0 98.6 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00067 8182 9001 bacA 0/0 99.8 98.7 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00008 11081 11803 baeR 0/0 100.0 99.5 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00008 11800 13203 baeS 0/0 100.0 98.7 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00036 22414 23787 cpxA 0/0 100.0 98.5 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00052 15000 15632 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00031 21738 22613 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00063 20022 21194 emrA 0/0 100.0 98.2 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00063 21211 22749 emrB 0/0 100.0 98.5 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00020 4530 5585 emrK 0/0 100.0 98.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00063 19365 19895 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00020 2992 4530 emrY 0/0 100.0 98.8 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00048 17465 19108 eptA 0/0 100.0 99.2 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00005 127853 129046 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00078 8727 9860 Escherichia_coli_ampC 0/0 100.0 97.2 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00020 63862 65166 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00005 36337 37494 Escherichia_coli_ampH 0/0 100.0 98.7 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00046 2507 2839 Escherichia_coli_emrE 0/0 100.0 92.2 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00061 1218 2450 Escherichia_coli_mdfA 0/0 100.0 97.6 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00020 6109 6723 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00020 6728 10321 evgS 0/0 100.0 99.5 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00011 103823 104551 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00011 104919 105743 gadX 0/0 100.0 97.8 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00009 55089 55502 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00024 8068 8740 kdpE 0/0 99.3 97.2 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00018 9298 9681 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00008 20816 22063 mdtA 0/0 100.0 98.2 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00008 17694 20816 mdtB 0/0 100.0 98.0 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00008 14616 17693 mdtC 0/0 100.0 98.1 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00011 99165 100322 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00011 100347 103460 mdtF 0/0 100.0 98.6 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00013 100113 101339 mdtG 0/0 100.0 99.2 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00013 90274 91482 mdtH 0/0 100.0 98.8 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00015 4255 5286 mdtN 0/0 100.0 98.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00015 5286 7337 mdtO 0/0 100.0 98.8 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00015 7334 8800 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00037 4214 4690 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00004 51527 53275 msbA 0/0 100.0 99.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00001 124221 125189 pmrF 0/0 100.0 99.4 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00031 27254 27910 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00032 36175 37662 tolC 0/0 100.0 98.4 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00008 77989 79155 ugd 0/0 100.0 95.9 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00001 75559 77202 yojI 0/0 100.0 98.2 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00020 63862 65166 (Bla)AmpC1_Ecoli 0/0 100 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00078 8727 9860 (Bla)AmpC2_Ecoli 0/0 100 97.2 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00005 36337 37494 (Bla)ampH_Ecoli 0/0 100 98.7 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00031 21738 22613 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00024 60529 62430 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00031 27254 27910 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00031 21738 22613 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00078 8727 9860 blaEC-13 0/0 100 99.6 NG_049079.1 class C extended-spectrum beta-lactamase EC-13 CEPHALOSPORIN
contig00031 27254 27910 qnrS1 0/0 100 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00005 127853 129046 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00005 124681 127830 ACRB 0/0 100.0 99.1 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00035 17245 20358 ACRD 0/0 100.0 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00029 8449 9606 ACRE 0/0 100.0 99.0 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00029 5333 8437 ACRF 0/0 100.0 99.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00029 10005 10667 ACRS 0/0 100.0 98.6 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00005 36337 37494 AMPH 0/0 100.0 98.7 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00008 33670 35522 ASMA 0/0 100.0 98.1 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00067 8182 9001 BACA 0/0 99.8 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00008 11081 11803 BAER 0/0 100.0 99.5 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00008 11800 13203 BAES 0/0 100.0 98.7 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00001 49097 50287 BCR 0/0 100.0 98.2 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00078 8727 9860 BLAEC 0/0 100.0 99.6 MEG_1280 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00036 21719 22417 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00036 22414 23787 CPXAR 0/0 100.0 99.1 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00052 15000 15632 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00063 20022 21194 EMRA 0/0 100.0 98.2 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00063 21211 22749 EMRB 0/0 100.0 98.5 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00007 27098 28288 EMRD 0/0 100.0 99.9 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00020 4530 5693 EMRK 0/0 100.0 98.8 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00063 19365 19895 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00020 2992 4530 EMRY 0/0 100.0 98.9 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00048 17465 19108 EPTA 0/0 100.0 99.2 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00020 6728 10321 EVGS 0/0 100.0 99.5 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00011 103823 104551 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00011 104919 105743 GADX 0/0 100.0 97.8 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00009 55089 55502 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00024 8068 8740 KDPE 0/0 99.3 97.2 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00018 9292 9681 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00018 8844 9278 MARR 0/0 100.0 97.7 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00061 1218 2450 MDFA 0/0 100.0 99.2 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00008 20816 22063 MDTA 0/0 100.0 98.2 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00008 17694 20816 MDTB 0/0 100.0 98.0 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00008 14616 17693 MDTC 0/0 100.0 98.1 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00011 99165 100322 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00011 100347 103460 MDTF 0/0 100.0 98.6 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00013 100113 101339 MDTG 0/0 100.0 99.3 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00013 90274 91482 MDTH 0/0 100.0 98.8 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00018 48327 48656 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00018 48643 49008 MDTJ 0/0 100.0 98.9 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00010 71668 73041 MDTK 0/0 100.0 99.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00015 4255 5286 MDTN 0/0 100.0 98.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00015 5286 7337 MDTO 0/0 100.0 98.8 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00015 7334 8800 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00037 4214 4690 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00004 51527 53275 MSBA 0/0 100.0 99.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00046 2507 2839 MVRC 0/0 100.0 92.2 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00024 60529 62430 PBP2 0/0 100.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00020 63862 65166 PBP4B 0/0 100.0 98.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00001 124221 125189 PMRF 0/0 100.0 99.4 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00031 27254 27910 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00014 11922 12791 ROBA 0/0 100.0 99.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00015 30417 30739 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00008 77989 79155 UGD 0/0 100.0 95.9 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00001 75559 77202 YOGI 0/0 100.0 98.2 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID058
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00034 4557 5360 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00034 3721 4557 aph(6)-Id_1 0/0 100.0 100.0 M28829 aph(6)-Id Streptomycin
contig00228 3498 4373 blaCTX-M-121_1 0/0 100.0 100.0 JN790862 blaCTX-M-121 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig01175 46 921 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00034 2140 3000 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00821 181 663 dfrA14_5 0/0 100.0 99.6 DQ388123 dfrA14 Trimethoprim
contig00173 3600 4256 qnrS1_1 0/0 100.0 100.0 AB187515 qnrS1 Ciprofloxacin
contig00034 5421 6236 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00378 1676 2922 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00119 2469 5618 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00168 733 3846 acrD 0/0 100.0 100.0 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00034 4557 5360 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00034 3721 4557 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00439 922 1743 bacA 0/0 100.0 100.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00595 1173 1895 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00555 429 1802 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00228 3498 4373 CTX-M-121 0/0 100.0 100.0 JN790862:244-1120 CTX-M-121 is a beta-lactamase found in Escherichia coli cephalosporin
contig01175 46 921 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00821 181 663 dfrA14 0/0 100.0 99.8 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00658 1051 2150 emrA 0/0 93.8 99.9 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00327 2290 3345 emrK 0/0 100.0 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00658 394 924 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00327 752 2290 emrY 0/0 100.0 99.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00119 1253 2446 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00347 1062 2219 Escherichia_coli_ampH 0/0 100.0 98.9 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00117 3826 4158 Escherichia_coli_emrE 0/0 100.0 91.9 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig01773 225 839 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00500 1981 2691 gadW 0/0 97.5 94.5 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00500 789 1613 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig01162 154 567 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00312 1550 2707 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00015 3182 4408 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00056 6447 7478 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00056 4396 6447 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00056 2933 4399 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00576 1090 1564 mphB 0/0 99.6 97.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig01927 170 646 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00022 7330 9078 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00193 2029 2997 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00173 3600 4256 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00034 5421 6236 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00034 2140 3000 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00378 1676 2922 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00003 8582 9748 ugd 0/0 100.0 95.6 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00007 4872 6038 ugd 0/0 100.0 96.1 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00034 4557 5360 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00034 3721 4557 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00347 1062 2219 (Bla)ampH_Ecoli 0/0 100 98.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00228 3498 4373 (Bla)blaCTX-M-121 0/0 100 100.0 JN790862:245-1120 (Bla)blaCTX-M-121 NA
contig01175 46 921 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00034 2140 3000 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00173 3600 4256 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00034 5421 6236 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00378 1648 2922 (Tet)tetA 0/0 100 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00821 181 654 (Tmt)dfrA14 0/0 100 100.0 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00034 4557 5384 aph(3’’)-Ib 0/0 100 100 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00034 3721 4557 aph(6)-Id 0/0 100 100 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00228 3498 4373 blaCTX-M-121 0/0 100 100 NG_048914.1 class A extended-spectrum beta-lactamase CTX-M-121 CEPHALOSPORIN
contig01175 46 921 blaCTX-M-15 0/0 100 100 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00034 2140 3000 blaTEM-1 0/0 100 100 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00821 181 654 dfrA14 0/0 100 100 NG_056035.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00173 3600 4256 qnrS1 0/0 100 100 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig00034 5421 6236 sul2 0/0 100 100 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00378 1648 2847 tet(A) 0/0 100 100 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00119 1253 2446 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00119 2469 5618 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00168 733 3846 ACRD 0/0 100.0 100.0 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00347 1062 2219 AMPH 0/0 100.0 98.9 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00034 4557 5384 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00034 3721 4557 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00439 922 1743 BACA 0/0 100.0 100.0 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00595 1173 1895 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00174 1152 2342 BCR 0/0 100.0 100.0 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00555 429 1802 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00228 2521 3463 CTX 0/0 100.0 98.9 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00228 3492 4395 CTX 0/0 100.0 99.7 MEG_2401 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00821 181 654 DFRA 0/0 100.0 99.8 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00658 1051 2150 EMRA 0/0 93.8 99.9 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00327 2290 3453 EMRK 0/0 100.0 99.9 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00658 394 924 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00327 752 2290 EMRY 0/0 100.0 99.1 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00500 1981 2691 GADW 0/0 97.5 99.9 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00500 789 1613 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig01162 154 567 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig01127 916 1350 MARR 0/0 100.0 98.4 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig02203 193 627 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00312 1550 2707 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00015 3182 4408 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00390 1297 1626 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00390 945 1310 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00056 6447 7478 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00056 4396 6447 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00056 2933 4399 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00576 1090 1564 MPHB 0/0 99.6 97.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig01927 170 646 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00022 7330 9078 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00117 3826 4158 MVRC 0/0 100.0 91.9 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00193 2029 2997 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00173 3600 4256 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00604 1660 1982 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00034 5421 6236 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00034 1773 3018 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00378 1648 2922 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00003 8582 9748 UGD 0/0 100.0 95.6 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00007 4872 6038 UGD 0/0 100.0 96.1 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
ID066
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00064 2526 3327 aadA2_1 0/0 97.9 99.9 NC_010870 aadA2 Streptomycin
contig00066 919 1722 aph(3’’)-Ib_5 0/0 100.0 99.9 AF321551 aph(3’’)-Ib Streptomycin
contig00066 83 919 aph(6)-Id_1 0/0 100.0 99.8 M28829 aph(6)-Id Streptomycin
contig00061 427 1302 blaCTX-M-27_1 0/0 100.0 100.0 AY156923 blaCTX-M-27 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00086 109 969 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00056 1 660 catA1_1 0/0 100.0 99.8 V00622 catA1 Chloramphenicol
contig00064 3725 4222 dfrA12_8 0/0 100.0 100.0 AM040708 dfrA12 Trimethoprim
contig00107 4 486 dfrA14_5 0/0 100.0 99.6 DQ388123 dfrA14 Trimethoprim
contig00070 266 1029 erm(B)_18 2/2 100.0 99.0 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig00010 78274 79506 mdf(A)_1 0/0 100.0 98.5 Y08743 mdf(A)
contig00059 4118 5048 mph(A)_2 2/10 100.0 98.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00064 1182 2048 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00066 1783 2598 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00071 1097 2301 tet(B)_2 0/0 99.9 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00064 2526 3305 aadA2 0/0 100.0 99.9 AF156486:5012-5792 aadA2 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in K. pneumoniae Salmonella spp. Corynebacterium glutamicum C. freundii and Aeromonas spp. aminoglycoside
contig00011 73090 76239 acrB 0/0 100.0 99.1 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00008 135661 138774 acrD 0/0 100.0 99.0 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00014 114452 115609 acrE 0/0 100.0 98.8 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00014 115621 118725 acrF 0/0 100.0 98.9 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00014 113391 114053 acrS 0/0 100.0 98.9 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00066 919 1722 APH(3’’)-Ib 0/0 100.0 99.6 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00066 83 919 APH(6)-Id 0/0 100.0 99.6 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00002 77356 78175 bacA 0/0 99.8 98.9 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00022 48811 49533 baeR 0/0 100.0 99.5 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00022 47411 48814 baeS 0/0 100.0 98.7 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00056 1 660 catI 0/0 100.0 99.8 V00622:243-903 catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii phenicol
contig00023 67580 68953 cpxA 0/0 100.0 98.8 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00004 15000 15632 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00061 427 1302 CTX-M-27 0/0 100.0 100.0 AY156923:0-876 CTX-M-27 is a beta-lactamase found in Escherichia coli cephalosporin
contig00064 3725 4222 dfrA12 0/0 100.0 100.0 GU585907.1:22103-21605 dfrA12 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00107 4 486 dfrA14 0/0 100.0 99.8 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00025 59204 60376 emrA 0/0 100.0 98.2 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00025 60393 61931 emrB 0/0 100.0 99.2 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00003 208568 209623 emrK 0/0 100.0 99.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00025 58547 59077 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00003 207030 208568 emrY 0/0 100.0 98.7 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00009 136387 138030 eptA 0/0 100.0 99.4 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00070 292 1037 ErmB 1/1 99.9 99.2 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig00011 71874 73067 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00009 180237 181370 Escherichia_coli_ampC 0/0 100.0 97.5 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00008 169892 171196 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00011 161111 162268 Escherichia_coli_ampH 0/0 100.0 98.7 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00010 78274 79506 Escherichia_coli_mdfA 0/0 100.0 96.9 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00003 210147 210761 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00003 210766 214359 evgS 0/0 100.0 99.4 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00004 181934 182662 gadW 0/0 100.0 94.8 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00004 183030 183854 gadX 0/0 100.0 97.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00007 204568 204981 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00013 8162 8834 kdpE 0/0 99.3 97.3 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00016 52571 52954 marA 0/0 100.0 99.2 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00022 38551 39798 mdtA 0/0 100.0 98.0 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00022 39798 42920 mdtB 0/0 100.0 98.7 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00022 42921 45998 mdtC 0/0 100.0 98.2 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00004 177276 178433 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00004 178458 181571 mdtF 0/0 100.0 98.6 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00005 176904 178130 mdtG 0/0 100.0 99.2 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00005 167065 168273 mdtH 0/0 100.0 98.9 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00012 117206 118438 mdtM 0/0 100.0 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00009 112702 113733 mdtN 0/0 100.0 98.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00009 110651 112702 mdtO 0/0 100.0 98.7 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00009 109188 110654 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00059 4146 5048 mphA 0/0 99.7 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00008 113908 114382 mphB 0/0 99.6 97.5 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00018 24523 26271 msbA 0/0 100.0 99.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00003 57890 58858 pmrF 0/0 100.0 99.7 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00064 1182 2021 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00066 1783 2598 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00086 109 969 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00071 1097 2301 tet(B) 0/0 99.9 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00002 100534 102021 tolC 0/0 100.0 98.5 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00003 2012 3655 yojI 0/0 100.0 98.2 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00064 2526 3305 (AGly)aadA2 0/0 100.0 99.9 X68227:66-945 (AGly)aadA2 NA
contig00066 919 1722 (AGly)strA 0/0 100.0 99.8 AB366441:22458-23261 (AGly)strA NA
contig00066 83 919 (AGly)strB 0/0 100.0 99.8 FJ474091:264-1100 (AGly)strB NA
contig00008 169892 171196 (Bla)AmpC1_Ecoli 0/0 100.0 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00009 180237 181370 (Bla)AmpC2_Ecoli 0/0 100.0 97.5 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00011 161111 162268 (Bla)ampH_Ecoli 0/0 100.0 98.7 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00061 427 1302 (Bla)blaCTX-M-27 0/0 100.0 100.0 AY156923:1-876 (Bla)blaCTX-M-27 NA
contig00086 109 969 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00013 60623 62524 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 99.4 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00070 292 1029 (MLS)erm(B) 0/0 100.0 99.6 M11180:714-1451 (MLS)erm(B) NA
contig00059 4146 5048 (MLS)mph(A) 0/0 99.7 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00056 1 660 (Phe)catA1 0/0 100.0 99.8 V00622:244-903 (Phe)catA1 NA
contig00064 1182 2021 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00066 1783 2598 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00071 1097 2301 (Tet)tetB 0/0 99.9 99.7 AB089594:1-1206 (Tet)tetB NA
contig00064 3725 4222 (Tmt)dfrA12 0/0 100.0 100.0 Z21672:310-807 (Tmt)dfrA12 NA
contig00107 4 477 (Tmt)dfrA14 0/0 100.0 100.0 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00064 2526 3317 aadA2 0/0 100.0 100.0 NG_047343.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA2 STREPTOMYCIN
contig00066 919 1746 aph(3’’)-Ib 0/0 100.0 99.9 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00066 83 919 aph(6)-Id 0/0 100.0 99.9 NG_047466.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00061 427 1302 blaCTX-M-27 0/0 100.0 100.0 NG_048976.1 class A extended-spectrum beta-lactamase CTX-M-27 CEPHALOSPORIN
contig00009 180237 181370 blaEC-18 0/0 100.0 99.2 NG_049083.1 class C extended-spectrum beta-lactamase EC-18 CEPHALOSPORIN
contig00086 109 969 blaTEM-1 0/0 100.0 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00056 1 660 catA1 0/0 100.0 99.8 NG_047582.1 type A-1 chloramphenicol O-acetyltransferase CHLORAMPHENICOL
contig00064 3725 4222 dfrA12 0/0 100.0 100.0 NG_047689.1 trimethoprim-resistant dihydrofolate reductase DfrA12 TRIMETHOPRIM
contig00107 4 477 dfrA14 0/0 100.0 100.0 NG_056035.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00070 292 1029 erm(B) 0/0 100.0 99.9 NG_047804.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) MACROLIDE
contig00059 4118 5048 mph(A) 2/10 100.0 98.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00064 1182 2021 sul1 0/0 100.0 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00066 1783 2598 sul2 0/0 100.0 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00071 1097 2301 tet(B) 0/0 99.9 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00011 71874 73067 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00011 73090 76239 ACRB 0/0 100.0 99.1 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00008 135661 138774 ACRD 0/0 100.0 99.0 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00014 114452 115609 ACRE 0/0 100.0 98.8 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00014 115621 118725 ACRF 0/0 100.0 98.9 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00014 113391 114053 ACRS 0/0 100.0 98.9 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00011 161111 162268 AMPH 0/0 100.0 98.7 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00064 2526 3327 ANT3-DPRIME 0/0 97.9 99.9 MEG_975 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00066 919 1746 APH3-DPRIME 0/0 100.0 99.9 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00066 83 919 APH6 0/0 100.0 99.9 MEG_1084 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00022 24763 26616 ASMA 0/0 100.0 96.1 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00002 77356 78175 BACA 0/0 99.8 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00022 48811 49533 BAER 0/0 100.0 99.5 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00022 47411 48814 BAES 0/0 100.0 98.7 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00017 85269 86459 BCR 0/0 100.0 98.2 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00009 180237 181370 BLAEC 0/0 100.0 99.2 MEG_1279 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00056 1 660 CATA 0/0 100.0 100.0 MEG_1584 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig00023 66885 67583 CPXAR 0/0 100.0 99.7 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00023 67580 68953 CPXAR 0/0 100.0 99.4 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00004 15000 15632 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00061 405 1308 CTX 0/0 100.0 99.8 MEG_2401 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00061 1337 2279 CTX 0/0 100.0 100.0 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00064 3725 4222 DFRA 0/0 100.0 100.0 MEG_2551 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00107 4 477 DFRA 0/0 100.0 99.8 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00025 59204 60376 EMRA 0/0 100.0 98.2 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00025 60393 61931 EMRB 0/0 100.0 99.2 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00006 131531 132721 EMRD 0/0 100.0 99.9 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00003 208568 209731 EMRK 0/0 100.0 99.7 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00025 58547 59077 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00003 207030 208568 EMRY 0/0 100.0 98.8 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00009 136387 138030 EPTA 0/0 100.0 99.4 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00070 266 1029 ERMB 2/2 100.0 99.0 MEG_2801 Drugs:MLS:23S_rRNA_methyltransferases:ERMB NA
contig00003 210766 214359 EVGS 0/0 100.0 99.4 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00004 181934 182662 GADW 0/0 100.0 99.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00004 183030 183854 GADX 0/0 100.0 97.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00007 204568 204981 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00013 8162 8834 KDPE 0/0 99.3 97.3 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00016 52565 52954 MARA 0/0 100.0 99.2 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00016 52117 52551 MARR 0/0 100.0 97.9 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00010 78274 79506 MDFA 0/0 100.0 98.5 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00022 38551 39798 MDTA 0/0 100.0 98.0 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00022 39798 42920 MDTB 0/0 100.0 98.7 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00022 42921 45998 MDTC 0/0 100.0 98.2 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00004 177276 178433 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00004 178458 181571 MDTF 0/0 100.0 98.6 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00005 176904 178130 MDTG 0/0 100.0 99.3 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00005 167065 168273 MDTH 0/0 100.0 98.9 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00016 91600 91929 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00016 91916 92281 MDTJ 0/0 100.0 98.1 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00001 335484 336857 MDTK 0/0 100.0 99.1 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00012 117206 118438 MDTM 0/0 100.0 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00009 112702 113733 MDTN 0/0 100.0 98.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00009 110651 112702 MDTO 0/0 100.0 98.7 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00009 109188 110654 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00059 4118 5048 MPHA 2/10 100.0 98.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00008 113908 114382 MPHB 0/0 99.6 97.5 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00018 24523 26271 MSBA 0/0 100.0 99.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00013 60623 62524 PBP2 0/0 100.0 99.4 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00008 169892 171196 PBP4B 0/0 100.0 98.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00003 57890 58858 PMRF 0/0 100.0 99.7 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00012 47447 48316 ROBA 0/0 100.0 99.4 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00009 87250 87572 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00064 1055 2022 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00066 1783 2598 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00071 1097 2301 TETB 0/0 99.9 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00003 2012 3655 YOGI 0/0 100.0 98.2 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID070
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00118 1695 2555 aac(3)-IIa_1 0/0 100 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig00122 1539 2138 aac(6’)-Ib-cr_1 0/0 100 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00107 1702 2490 aadA5_1 0/0 100 100.0 AF137361 aadA5 Streptomycin
contig00110 221 1096 blaCTX-M-15_1 0/0 100 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00122 578 1408 blaOXA-1_1 0/0 100 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00107 2621 3094 dfrA17_1 0/0 100 100.0 FJ460238 dfrA17 Trimethoprim
contig00029 30138 31370 mdf(A)_1 0/0 100 99.9 Y08743 mdf(A)
contig00111 2639 3560 mph(A)_2 1/1 100 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00107 316 1182 sul1_5 0/0 100 99.9 EU780013 sul1 Sulfamethoxazole
contig00104 1718 2923 tet(B)_2 0/0 100 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00118 1695 2555 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00122 1539 2138 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00107 1702 2490 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00008 39134 42283 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00001 375904 379017 acrD 0/0 100.0 98.9 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00007 121749 122906 acrE 0/0 100.0 99.0 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00007 122918 126022 acrF 0/0 100.0 100.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00007 120688 121350 acrS 0/0 100.0 99.4 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00010 52778 53597 bacA 0/0 99.8 98.9 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00035 29069 29791 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00035 27669 29072 baeS 0/0 100.0 99.9 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00046 23043 24416 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00018 15081 15713 CRP 0/0 100.0 99.7 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00110 221 1096 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00107 2621 3094 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00050 5195 6367 emrA 0/0 100.0 98.3 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00050 3640 5178 emrB 0/0 100.0 99.9 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00001 284150 285205 emrK 0/0 100.0 99.2 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00050 6494 7024 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00001 282612 284150 emrY 0/0 100.0 99.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00003 120144 121787 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00008 37918 39111 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00003 164009 165142 Escherichia_coli_ampC 0/0 100.0 100.0 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00001 343482 344786 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00008 127250 128407 Escherichia_coli_ampH 0/0 100.0 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00034 46369 46701 Escherichia_coli_emrE 0/0 100.0 91.9 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00029 30138 31370 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00001 285729 286343 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00001 286348 289941 evgS 0/0 100.0 99.6 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00036 41068 41796 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00036 42164 42988 gadX 0/0 100.0 97.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00048 25271 25684 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00057 8068 8745 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00023 40695 41078 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00035 18809 20056 mdtA 0/0 100.0 97.9 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00035 20056 23178 mdtB 0/0 100.0 99.7 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00035 23179 26256 mdtC 0/0 100.0 99.8 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00036 36410 37567 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00036 37592 40705 mdtF 0/0 100.0 98.5 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00056 16616 17842 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00005 2605 3813 mdtH 0/0 100.0 100.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00053 473 1684 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00003 89475 90506 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00003 87424 89475 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00003 85961 87427 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00111 2655 3560 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00001 400293 400767 mphB 0/0 99.6 97.5 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00004 23577 25325 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00122 578 1408 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00001 169035 170003 pmrF 0/0 100.0 99.5 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00107 316 1155 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00104 1718 2923 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00010 28929 30416 tolC 0/0 100.0 98.4 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00001 120452 122095 yojI 0/0 100.0 98.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00118 1695 2555 (AGly)aac3-IIa 0/0 100 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig00107 1702 2490 (AGly)aadA5 0/0 100 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00001 343482 344786 (Bla)AmpC1_Ecoli 0/0 100 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00003 164009 165142 (Bla)AmpC2_Ecoli 0/0 100 100.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00008 127250 128407 (Bla)ampH_Ecoli 0/0 100 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00110 221 1096 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00122 578 1408 (Bla)blaOXA-1 0/0 100 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00015 30073 31974 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00111 2655 3560 (MLS)mph(A) 0/0 100 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00107 316 1155 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00104 1718 2923 (Tet)tetB 0/0 100 99.7 AB089594:1-1206 (Tet)tetB NA
contig00107 2621 3094 (Tmt)dfrA17 0/0 100 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00118 1695 2555 aac(3)-IIe 0/0 100 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig00122 1539 2093 aac(6’)-Ib-D181Y 0/0 100 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00107 1702 2490 aadA5 0/0 100 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00110 221 1096 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00003 164009 165142 blaEC 0/0 100 100.0 NG_047494.1 BlaEC family class C beta-lactamase BETA-LACTAM
contig00122 578 1408 blaOXA-1 0/0 100 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00107 2621 3094 dfrA17 0/0 100 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00111 2639 3560 mph(A) 1/1 100 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00107 316 1155 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00104 1718 2923 tet(B) 0/0 100 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00118 1695 2555 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00008 37918 39111 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00008 39134 42283 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00001 375904 379017 ACRD 0/0 100.0 98.9 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00007 121749 122906 ACRE 0/0 100.0 99.0 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00007 122918 126022 ACRF 0/0 100.0 100.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00007 120688 121350 ACRS 0/0 100.0 99.4 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00003 164009 165142 AMPC 0/0 100.0 100.0 MEG_728 Drugs:betalactams:Class_C_betalactamases:AMPC NA
contig00008 127250 128407 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00107 1702 2490 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00035 5018 6870 ASMA 0/0 100.0 97.5 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00010 52778 53597 BACA 0/0 99.8 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00035 29069 29791 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00035 27669 29072 BAES 0/0 100.0 99.9 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00001 93990 95180 BCR 0/0 100.0 98.2 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00046 22348 23046 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00046 23043 24416 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00018 15081 15713 CRP 0/0 100.0 99.7 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00139 61 987 CTX 0/0 98.3 98.2 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00107 2621 3094 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00050 5195 6367 EMRA 0/0 100.0 98.3 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00050 3640 5178 EMRB 0/0 100.0 99.9 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00024 16466 17656 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00001 284150 285313 EMRK 0/0 100.0 99.2 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00050 6494 7024 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00001 282612 284150 EMRY 0/0 100.0 99.1 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00003 120144 121787 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00001 286348 289941 EVGS 0/0 100.0 99.6 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00036 41068 41796 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00036 42164 42988 GADX 0/0 100.0 97.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00048 25271 25684 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00057 8068 8745 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00023 40689 41078 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00023 40241 40675 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00029 30138 31370 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00035 18809 20056 MDTA 0/0 100.0 97.9 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00035 20056 23178 MDTB 0/0 100.0 99.7 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00035 23179 26256 MDTC 0/0 100.0 99.8 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00036 36410 37567 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00036 37592 40705 MDTF 0/0 100.0 98.5 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00056 16616 17842 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00005 2605 3813 MDTH 0/0 100.0 100.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00028 21818 22147 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00028 22134 22499 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00002 264518 265891 MDTK 0/0 100.0 100.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00053 473 1684 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00003 89475 90506 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00003 87424 89475 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00003 85961 87427 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00111 2639 3560 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00001 400293 400767 MPHB 0/0 99.6 97.5 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00004 23577 25325 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00034 46369 46701 MVRC 0/0 100.0 91.9 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00122 578 1408 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00015 30073 31974 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00001 343482 344786 PBP4B 0/0 100.0 98.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00001 169035 170003 PMRF 0/0 100.0 99.5 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00037 19925 20794 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00003 64021 64344 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00107 189 1156 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00104 1718 2923 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00104 3717 4133 TETD 0/0 100.0 100.0 MEG_7070 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETD NA
contig00001 120452 122095 YOGI 0/0 100.0 98.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID073
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00185 71 931 blaSHV-12_1 0/0 100 100.0 KF976405 blaSHV-12 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00165 395 1255 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00157 264 1027 erm(B)_18 2/2 100 99.0 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig00029 16291 17523 mdf(A)_1 0/0 100 98.6 Y08743 mdf(A)
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00003 80246 83395 acrB 0/0 100.0 99.3 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00030 37677 40790 acrD 0/0 100.0 99.3 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00013 79239 80396 acrE 0/0 100.0 99.1 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00013 80408 83512 acrF 0/0 100.0 98.5 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00013 78178 78840 acrS 0/0 100.0 99.1 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00009 69268 70089 bacA 0/0 100.0 98.4 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00011 80989 81711 baeR 0/0 100.0 99.5 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00011 79589 80992 baeS 0/0 100.0 93.9 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00008 8959 10332 cpxA 0/0 100.0 98.8 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00002 42025 42657 CRP 0/0 100.0 99.4 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00063 14748 15920 emrA 0/0 100.0 98.9 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00063 15937 17475 emrB 0/0 100.0 98.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00056 7518 8573 emrK 0/0 100.0 98.4 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00063 14091 14621 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00056 5980 7518 emrY 0/0 100.0 98.8 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00007 53018 54661 eptA 0/0 100.0 98.8 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00157 290 1035 ErmB 1/1 99.9 99.2 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig00003 83418 84611 Escherichia_coli_acrA 0/0 100.0 99.9 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00007 96718 97851 Escherichia_coli_ampC 0/0 100.0 98.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00023 44869 46173 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 96.3 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00027 12330 13487 Escherichia_coli_ampH 0/0 100.0 98.9 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00029 16291 17523 Escherichia_coli_mdfA 0/0 100.0 97.1 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00056 9096 9710 evgA 0/0 100.0 99.7 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00056 9715 13308 evgS 0/0 100.0 97.4 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00028 35258 35986 gadW 0/0 100.0 94.9 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00028 34066 34890 gadX 0/0 100.0 98.1 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00024 24031 24444 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00021 11168 11845 kdpE 0/0 100.0 96.6 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00033 31485 31868 marA 0/0 100.0 99.7 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00011 71976 75098 mdtB 0/0 100.0 98.9 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00011 75099 78176 mdtC 0/0 100.0 98.9 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00028 39487 40644 mdtE 0/0 100.0 99.3 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00028 36349 39462 mdtF 0/0 100.0 99.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00004 132356 133582 mdtG 0/0 100.0 98.5 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00004 122517 123725 mdtH 0/0 100.0 99.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00034 35718 36950 mdtM 0/0 100.0 96.3 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00007 19557 20588 mdtN 0/0 100.0 98.6 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00007 17506 19557 mdtO 0/0 100.0 97.5 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00007 16046 17509 mdtP 1/3 99.8 98.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00030 16486 16960 mphB 0/0 99.6 98.1 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00014 49560 51308 msbA 0/0 100.0 98.9 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00006 124902 125870 pmrF 0/0 100.0 98.7 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00185 71 931 SHV-134 0/0 100.0 99.9 HM559945:0-861 SHV-134 is an extended-spectrum beta-lactamase. carbapenem, cephalosporin, penam
contig00165 395 1255 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00009 50633 52120 tolC 0/0 100.0 98.9 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00006 74481 76124 yojI 0/0 100.0 99.5 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00023 44869 46173 (Bla)AmpC1_Ecoli 0/0 100 96.3 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00007 96718 97851 (Bla)AmpC2_Ecoli 0/0 100 98.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00027 12330 13487 (Bla)ampH_Ecoli 0/0 100 98.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00185 71 931 (Bla)blaSHV-12 0/0 100 100.0 FJ685654:24-860 (Bla)blaSHV-12 NA
contig00165 395 1255 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00021 61939 63840 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.8 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00157 290 1027 (MLS)erm(B) 0/0 100 99.6 M11180:714-1451 (MLS)erm(B) NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00007 96718 97851 blaEC 0/0 100 99.1 NG_047496.1 BlaEC family class C beta-lactamase BETA-LACTAM
contig00185 71 931 blaSHV-12 0/0 100 100.0 NG_050590.1 class A extended-spectrum beta-lactamase SHV-12 CEPHALOSPORIN
contig00165 395 1255 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00157 290 1027 erm(B) 0/0 100 99.9 NG_047804.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) MACROLIDE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00003 83418 84611 ACRA 0/0 100.0 99.9 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00003 80246 83395 ACRB 0/0 100.0 99.3 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00030 37677 40790 ACRD 0/0 100.0 99.3 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00013 79239 80396 ACRE 0/0 100.0 99.1 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00013 80408 83512 ACRF 0/0 100.0 98.5 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00013 78178 78840 ACRS 0/0 100.0 99.1 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00027 12330 13487 AMPH 0/0 100.0 98.9 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00009 69268 70089 BACA 0/0 100.0 98.7 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00011 80989 81711 BAER 0/0 100.0 99.5 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00011 79589 80992 BAES 0/0 100.0 93.9 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00006 47795 48985 BCR 0/0 100.0 97.1 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00007 96718 97851 BLAEC 0/0 100.0 99.1 MEG_1276 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00008 8959 10332 CPXAR 0/0 100.0 98.9 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00008 10329 11027 CPXAR 0/0 100.0 99.7 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00002 42025 42657 CRP 0/0 100.0 99.4 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00063 14748 15920 EMRA 0/0 100.0 98.9 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00063 15937 17475 EMRB 0/0 100.0 98.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00037 29091 30281 EMRD 0/0 100.0 98.3 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00056 7518 8681 EMRK 0/0 100.0 98.5 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00063 14091 14621 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00056 5980 7518 EMRY 0/0 100.0 98.9 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00007 53018 54661 EPTA 0/0 100.0 98.8 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00157 264 1027 ERMB 2/2 100.0 99.0 MEG_2801 Drugs:MLS:23S_rRNA_methyltransferases:ERMB NA
contig00056 9715 13308 EVGS 0/0 100.0 98.8 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00028 35258 35986 GADW 0/0 100.0 99.2 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00028 34066 34890 GADX 0/0 100.0 98.1 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00024 24031 24444 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00021 11168 11845 KDPE 0/0 100.0 96.6 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00033 31479 31868 MARA 0/0 100.0 99.7 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00033 31030 31464 MARR 0/0 100.0 98.2 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00029 16291 17523 MDFA 0/0 100.0 98.7 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00011 71976 75098 MDTB 0/0 100.0 98.9 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00011 75099 78176 MDTC 0/0 100.0 98.9 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00028 39487 40644 MDTE 0/0 100.0 99.3 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00028 36349 39462 MDTF 0/0 100.0 99.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00004 132356 133582 MDTG 0/0 100.0 98.8 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00004 122517 123725 MDTH 0/0 100.0 99.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00068 1754 2083 MDTI 0/0 100.0 99.4 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00068 2070 2434 MDTJ 0/0 99.7 99.2 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00020 33769 35142 MDTK 0/0 100.0 99.4 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00034 35718 36950 MDTM 0/0 100.0 96.3 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00007 19557 20588 MDTN 0/0 100.0 98.6 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00007 17506 19557 MDTO 0/0 100.0 97.5 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00007 16046 17509 MDTP 1/3 99.8 98.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00030 16486 16960 MPHB 0/0 99.6 98.1 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00014 49560 51308 MSBA 0/0 100.0 98.9 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00021 61939 63840 PBP2 0/0 100.0 98.8 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00023 44869 46173 PBP4B 0/0 100.0 96.3 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00006 124902 125870 PMRF 0/0 100.0 98.7 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00040 29575 30444 ROBA 0/0 100.0 98.8 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00185 25 1028 SHV 0/0 99.7 98.9 MEG_6428 Drugs:betalactams:Class_A_betalactamases:SHV NA
contig00054 4339 4661 SOXS 0/0 99.7 98.8 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00006 74481 76124 YOGI 0/0 100.0 99.5 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID081
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00112 1539 2138 aac(6’)-Ib-cr_1 0/0 100 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00096 1702 2490 aadA5_1 0/0 100 100.0 AF137361 aadA5 Streptomycin
contig00084 5421 6200 aph(3’’)-Ib_5 0/0 97 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00084 4585 5421 aph(6)-Id_1 0/0 100 100.0 M28829 aph(6)-Id Streptomycin
contig00095 1222 2097 blaCTX-M-15_1 0/0 100 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00112 578 1408 blaOXA-1_1 0/0 100 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00096 2621 3094 dfrA17_1 0/0 100 100.0 FJ460238 dfrA17 Trimethoprim
contig00005 64055 65287 mdf(A)_1 0/0 100 99.9 Y08743 mdf(A)
contig00122 68 989 mph(A)_2 1/1 100 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00096 316 1182 sul1_5 0/0 100 99.9 EU780013 sul1 Sulfamethoxazole
contig00084 85 900 sul2_2 0/0 100 100.0 AY034138 sul2 Sulfamethoxazole
contig00087 1998 3203 tet(B)_2 0/0 100 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00112 1539 2138 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00096 1702 2490 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00027 39300 42449 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00003 148083 151196 acrD 0/0 100.0 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00077 5525 8629 acrF 0/0 100.0 100.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00063 20452 21114 acrS 0/0 100.0 100.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00084 5421 6200 APH(3’’)-Ib 0/0 97.0 99.7 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00084 4585 5421 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00010 70354 71173 bacA 0/0 99.8 98.5 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00026 57251 57973 baeR 0/0 100.0 99.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00026 55851 57254 baeS 0/0 100.0 98.7 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00051 23029 24402 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00009 15387 16019 CRP 0/0 100.0 99.7 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00095 1222 2097 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00096 2621 3094 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00007 58703 59875 emrA 0/0 100.0 97.9 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00007 59892 61430 emrB 0/0 100.0 98.6 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00001 270703 271758 emrK 0/0 100.0 98.0 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00007 58046 58576 emrR 0/0 100.0 99.4 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00001 269165 270703 emrY 0/0 100.0 97.7 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00060 7687 9330 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00027 38084 39277 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00038 29763 30896 Escherichia_coli_ampC 0/0 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00059 25513 26811 Escherichia_coli_ampC1_beta-lactamase 0/0 99.5 96.1 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00018 65498 66655 Escherichia_coli_ampH 0/0 100.0 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00005 64055 65287 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00001 272282 272896 evgA 0/0 100.0 99.2 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00001 272901 276494 evgS 0/0 100.0 96.8 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00043 2243 2971 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00043 1051 1875 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00039 5312 5725 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00064 8068 8745 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00023 30981 31364 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00026 46991 48238 mdtA 0/0 100.0 98.1 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00026 48238 51360 mdtB 0/0 100.0 99.9 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00026 51361 54438 mdtC 0/0 100.0 97.7 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00043 6472 7629 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00043 3334 6447 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00035 29397 30623 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00035 19561 20769 mdtH 0/0 100.0 99.9 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00036 28265 29497 mdtM 0/0 100.0 96.3 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00019 60675 61706 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00019 58624 60675 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00019 57161 58627 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00122 68 973 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00003 126902 127376 mphB 0/0 99.6 96.2 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00004 51374 53122 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00112 578 1408 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00001 156190 157158 pmrF 0/0 100.0 98.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00096 316 1155 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00084 85 900 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00087 1998 3203 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00010 46587 48074 tolC 0/0 100.0 99.9 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00001 94315 95958 yojI 0/0 100.0 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00096 1702 2490 (AGly)aadA5 0/0 100.0 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00084 5421 6200 (AGly)strA 0/0 97.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00084 4585 5421 (AGly)strB 0/0 100.0 100.0 FJ474091:264-1100 (AGly)strB NA
contig00059 25513 26811 (Bla)AmpC1_Ecoli 0/0 99.5 96.1 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00038 29763 30896 (Bla)AmpC2_Ecoli 0/0 100.0 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00018 65498 66655 (Bla)ampH_Ecoli 0/0 100.0 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00095 1222 2097 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00112 578 1408 (Bla)blaOXA-1 0/0 100.0 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00012 38461 40362 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00122 68 973 (MLS)mph(A) 0/0 100.0 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00096 316 1155 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00084 85 900 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00087 1998 3203 (Tet)tetB 0/0 100.0 99.7 AB089594:1-1206 (Tet)tetB NA
contig00096 2621 3094 (Tmt)dfrA17 0/0 100.0 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00112 1539 2093 aac(6’)-Ib-D181Y 0/0 100.0 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00096 1702 2490 aadA5 0/0 100.0 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00084 5421 6200 aph(3’’)-Ib 0/0 94.2 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00084 4585 5421 aph(6)-Id 0/0 100.0 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00095 1222 2097 blaCTX-M-15 0/0 100.0 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00038 29763 30896 blaEC-15 0/0 100.0 98.5 NG_049081.1 class C extended-spectrum beta-lactamase EC-15 CEPHALOSPORIN
contig00112 578 1408 blaOXA-1 0/0 100.0 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00096 2621 3094 dfrA17 0/0 100.0 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00122 68 989 mph(A) 1/1 100.0 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00096 316 1155 sul1 0/0 100.0 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00084 85 900 sul2 0/0 100.0 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00087 1998 3203 tet(B) 0/0 100.0 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00027 38084 39277 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00027 39300 42449 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00003 148083 151196 ACRD 0/0 100.0 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00077 5525 8629 ACRF 0/0 100.0 100.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00063 20452 21114 ACRS 0/0 100.0 100.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00018 65498 66655 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00096 1702 2490 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00084 5421 6200 APH3-DPRIME 0/0 94.2 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00084 4585 5421 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00026 32873 34725 ASMA 0/0 100.0 97.2 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00010 70354 71173 BACA 0/0 99.8 98.8 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00026 57251 57973 BAER 0/0 100.0 99.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00026 55851 57254 BAES 0/0 100.0 98.7 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00001 67338 68528 BCR 0/0 100.0 100.0 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00038 29763 30896 BLAEC 0/0 100.0 98.5 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00051 22334 23032 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00051 23029 24402 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00009 15387 16019 CRP 0/0 100.0 99.7 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00125 62 1004 CTX 0/0 100.0 98.2 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00096 2621 3094 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00007 58703 59875 EMRA 0/0 100.0 97.9 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00007 59892 61430 EMRB 0/0 100.0 98.6 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00040 43174 44364 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00001 270703 271866 EMRK 0/0 100.0 98.2 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00007 58046 58576 EMRR 0/0 100.0 99.4 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00001 269165 270703 EMRY 0/0 100.0 97.7 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00060 7687 9330 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00001 272901 276494 EVGS 0/0 100.0 97.2 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00043 2243 2971 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00043 1051 1875 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00039 5312 5725 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00064 8068 8745 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00023 30975 31364 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00023 30527 30961 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00005 64055 65287 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00026 46991 48238 MDTA 0/0 100.0 98.1 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00026 48238 51360 MDTB 0/0 100.0 99.9 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00026 51361 54438 MDTC 0/0 100.0 97.7 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00043 6472 7629 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00043 3334 6447 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00035 29397 30623 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00035 19561 20769 MDTH 0/0 100.0 99.9 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00023 63757 64086 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00023 64073 64438 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00014 26477 27850 MDTK 0/0 100.0 100.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00036 28265 29497 MDTM 0/0 100.0 96.3 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00019 60675 61706 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00019 58624 60675 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00019 57161 58627 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00122 68 989 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00003 126902 127376 MPHB 0/0 99.6 96.2 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00004 51374 53122 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00112 578 1408 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00012 38461 40362 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00059 25513 26811 PBP4B 0/0 99.5 96.1 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00001 156190 157158 PMRF 0/0 100.0 98.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00045 21724 22593 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00019 35222 35545 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00096 189 1156 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00084 85 900 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00087 1998 3203 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00087 3997 4413 TETD 0/0 100.0 100.0 MEG_7070 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETD NA
contig00001 94315 95958 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID096I
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00122 5182 6042 aac(3)-IIa_1 0/0 100.0 100.0 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig00122 9866 10741 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00137 9040 9906 blaSHV-187_1 0/0 100.0 99.5 LN515533 blaSHV-187
contig00122 6184 7044 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00233 425 1084 catA1_1 0/0 100.0 99.8 V00622 catA1 Chloramphenicol
contig00202 4742 5315 dfrA7_5 3/4 100.0 98.8 AJ419170 dfrA7 Trimethoprim
contig00075 12852 13271 fosA_3 0/0 100.0 99.8 ACWO01000079 fosA Fosfomycin
contig00017 10037 11212 oqxA_1 0/0 100.0 99.4 EU370913 oqxA Nalidixic_acid, Ciprofloxacin
contig00017 6861 10013 oqxB_1 0/0 100.0 99.2 EU370913 oqxB Nalidixic_acid, Ciprofloxacin
contig00202 3432 4298 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00257 860 2106 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00122 5182 6042 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00233 425 1084 catI 0/0 100.0 99.8 V00622:243-903 catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii phenicol
contig00122 9866 10741 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00202 4842 5315 dfrA7 0/0 100.0 100.0 FJ854362:2338-2812 dfrA7 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00075 12852 13271 FosA6 0/0 100.0 99.5 KU254579.1:59421-59841 fosA6 is a plasmid-encoded enzyme that confers resistance to fosfomycin in Escherichia coli by breaking the epoxide ring of the molecule. fosfomycin
contig00010 8294 9487 Klebsiella_pneumoniae_acrA 2/3 99.8 97.7 AJ318073.1:793-1990 AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae which is encoded by the acrRAB operon. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00063 3564 3926 Klebsiella_pneumoniae_KpnE 0/0 100.0 99.2 AP006725.1:2483889-2484252 KpnE subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline
contig00063 3913 4242 Klebsiella_pneumoniae_KpnF 0/0 100.0 100.0 AP006725.1:2484238-2484568 KpnF subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan. aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline
contig00113 10340 11512 Klebsiella_pneumoniae_KpnG 0/0 100.0 99.3 ACWO01000051.1:22092-23265 KpnG consists of ~390 residues and resembles EmrA of E. coli. Disruption of the pump components KpnG-KpnH signficantly decrease resistance to azithromycin ceftazidime ciprofloxacin ertapenem erythromycin gentamicin imipenem ticarcillin norfloxacin polymyxin-B piperacillin spectinomycin tobramycin and streptomycin aminoglycoside, carbapenem, cephalosporin, fluoroquinolone, macrolide, penam, penem, peptide
contig00059 13299 14453 Klebsiella_pneumoniae_OmpK37 7/32 99.9 95.2 AJ011502.1:300-1425 Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36 which did not allow penetration by certain beta-lactams. Also when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35. carbapenem, cephalosporin, cephamycin, monobactam, penam, penem
contig00017 10037 11212 oqxA 0/0 100.0 99.4 EU370913.1:46651-47827 RND efflux pump conferring resistance to fluoroquinolone diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline
contig00017 6861 10013 oqxB 0/0 100.0 99.2 EU370913.1:47850-51003 RND efflux pump conferring resistance to fluoroquinolone diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline
contig00137 9040 9906 SHV-187 0/0 100.0 99.5 LN515533:0-867 From the Lahey list of beta-lactamases. carbapenem, cephalosporin, penam
contig00202 3432 4271 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00122 6184 7044 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00257 860 2106 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00122 5182 6042 (AGly)aac3-IIa 0/0 100 100.0 X51534:91-951 (AGly)aac3-IIa NA
contig00053 18628 19788 (Bla)ampH 0/0 100 99.9 CP003785:4208384-4209544 (Bla)ampH NA
contig00122 9866 10741 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00137 9040 9906 (Bla)blaSHV-187 0/0 100 99.5 LN515533:1-867 (Bla)blaSHV-187 NA
contig00122 6184 7044 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00075 12852 13271 (Fcyn)FosA6 0/0 100 99.5 KU254579:59422-59841 (Fcyn)FosA6 NA
contig00017 10037 11212 (Flq)OqxA 0/0 100 99.4 EU370913:46652-47827 (Flq)OqxA NA
contig00017 6861 10013 (Flq)OqxBgb 0/0 100 99.2 EU370913:47851-51003 (Flq)OqxBgb NA
contig00233 425 1084 (Phe)catA1 0/0 100 99.8 V00622:244-903 (Phe)catA1 NA
contig00202 3432 4271 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00257 860 2134 (Tet)tetA 0/0 100 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00257 179 829 (Tet)tetR 0/0 100 100.0 HF545434:53576-54226 (Tet)tetR NA
contig00202 4842 5315 (Tmt)dhfr7 0/0 100 100.0 X58425:594-1067 (Tmt)dhfr7 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00122 5182 6042 aac(3)-IIe 0/0 100 100.0 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig00122 9866 10741 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00137 9040 9906 blaSHV-187 0/0 100 99.5 NG_050053.1 class A beta-lactamase SHV-187 BETA-LACTAM
contig00122 6184 7044 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00233 425 1084 catA1 0/0 100 99.8 NG_047582.1 type A-1 chloramphenicol O-acetyltransferase CHLORAMPHENICOL
contig00202 4842 5315 dfrA7 0/0 100 100.0 NG_047737.1 trimethoprim-resistant dihydrofolate reductase DfrA7 TRIMETHOPRIM
contig00075 12852 13271 fosA_gen 0/0 100 99.8 NG_047884.1 FosA family fosfomycin resistance glutathione transferase FOSFOMYCIN
contig00017 10037 11212 oqxA10 0/0 100 99.8 NG_050418.1 multidrug efflux RND transporter periplasmic adaptor subunit OqxA10 PHENICOL, QUINOLONE
contig00017 6861 10013 oqxB32 0/0 100 100.0 NG_050452.1 multidrug efflux RND transporter permease subunit OqxB32 PHENICOL, QUINOLONE
contig00202 3432 4271 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00257 935 2134 tet(A) 0/0 100 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00122 5182 6042 AAC3 0/0 100.0 100.0 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00010 8294 9487 ACRA 2/3 99.8 97.7 MEG_400 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00053 18628 19788 AMPH 0/0 100.0 99.9 MEG_730 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00247 1749 3572 ASMA 0/0 100.0 99.3 MEG_1179 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00233 414 1084 CATA 0/0 100.0 100.0 MEG_1593 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig00005 22585 23283 CPXAR 0/0 100.0 99.6 MEG_2116 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00005 23280 24653 CPXAR 0/0 100.0 99.1 MEG_2115 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00202 4842 5315 DFRA 0/0 100.0 100.0 MEG_2548 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00075 12852 13271 FOSA 0/0 100.0 99.8 MEG_2993 Drugs:Fosfomycin:Fosfomycin_thiol_transferases:FOSA NA
contig00048 11011 12243 KDEA 0/0 100.0 100.0 MEG_3447 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:KDEA NA
contig00067 11440 12939 KMRA 0/0 100.0 99.3 MEG_3460 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:KMRA NA
contig00113 10340 11512 KPN 0/0 100.0 99.3 MEG_3512 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:KPN NA
contig00063 3564 3926 KPNE 0/0 100.0 99.2 MEG_3514 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:KPNE NA
contig00063 3913 4242 KPNF 0/0 100.0 100.0 MEG_3515 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:KPNF NA
contig00082 19762 20865 KPNO 4/18 99.5 95.3 MEG_3516 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:KPNO NA
contig00059 13299 14453 OMP37 7/32 99.9 95.2 MEG_4283 Drugs:betalactams:Mutant_porin_proteins:OMP37 NA
contig00017 10037 11212 OQXA 0/0 100.0 99.8 MEG_4326 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:OQXA NA
contig00017 6861 10013 OQXB 0/0 100.0 100.0 MEG_4339 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:OQXB NA
contig00021 40562 42028 PHOR 0/0 100.0 99.8 MEG_5786 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_regulator:PHOR NA
contig00137 9000 10003 SHV 0/0 99.7 98.9 MEG_6428 Drugs:betalactams:Class_A_betalactamases:SHV NA
contig00202 3305 4272 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00122 6166 7411 TEM 0/0 98.3 99.3 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00257 860 2134 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
ID098
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00268 1694 2554 aac(3)-IIa_1 0/0 100.0 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig00299 1540 2139 aac(6’)-Ib-cr_1 0/0 100.0 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00137 1442 2230 aadA5_1 0/0 100.0 100.0 AF137361 aadA5 Streptomycin
contig00259 1703 2578 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00299 579 1409 blaOXA-1_1 0/0 100.0 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00122 49 909 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00176 223 882 catA1_1 0/0 100.0 99.8 V00622 catA1 Chloramphenicol
contig00137 838 1311 dfrA17_1 0/0 100.0 100.0 FJ460238 dfrA17 Trimethoprim
contig00006 41013 42245 mdf(A)_1 0/0 100.0 98.3 Y08743 mdf(A)
contig00515 67 959 mph(A)_1 0/0 98.6 100.0 D16251 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00137 2750 3616 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00208 1712 2958 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
contig00198 849 2054 tet(B)_2 0/0 100.0 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00268 1694 2554 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00299 1540 2139 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00137 1442 2230 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00005 117721 120870 acrB 0/0 100.0 99.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00015 49488 52601 acrD 0/0 100.0 98.7 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00169 3 1160 acrE 0/0 100.0 98.2 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00169 1172 4276 acrF 0/0 100.0 97.5 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00009 354 1016 acrS 0/0 100.0 97.6 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00007 688 1507 bacA 0/0 99.8 97.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00173 3080 3801 baeR 0/0 99.9 97.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00173 1680 3083 baeS 0/0 100.0 92.1 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00176 223 882 catI 0/0 100.0 99.8 V00622:243-903 catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii phenicol
contig00032 15958 16590 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00259 1703 2578 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00137 838 1311 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00020 43734 44906 emrA 0/0 100.0 98.1 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00020 44923 46461 emrB 0/0 100.0 98.5 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00060 21731 22786 emrK 0/0 100.0 96.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00020 43077 43607 emrR 0/0 100.0 99.4 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00060 20193 21731 emrY 0/0 100.0 98.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00037 10125 11768 eptA 0/0 100.0 98.2 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00005 120893 122086 Escherichia_coli_acrA 0/0 100.0 99.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00062 12898 14031 Escherichia_coli_ampC 0/0 100.0 98.0 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00015 14955 16259 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 95.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00005 30315 31472 Escherichia_coli_ampH 0/0 100.0 97.3 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00304 1812 2140 Escherichia_coli_emrE 0/0 98.8 91.8 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00006 41013 42245 Escherichia_coli_mdfA 0/0 100.0 96.8 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00060 23309 23923 evgA 0/0 100.0 99.3 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00060 23928 27521 evgS 0/0 100.0 96.6 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00053 8537 9265 gadW 0/0 100.0 95.9 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00053 7344 8168 gadX 0/0 100.0 93.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00021 1492 1905 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00024 15684 16361 kdpE 0/0 100.0 95.6 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00030 23452 23835 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00372 1 1156 mdtA 0/0 92.6 97.4 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00053 12766 13923 mdtE 0/0 100.0 99.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00053 9628 12741 mdtF 0/0 100.0 98.4 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00023 35049 36275 mdtG 0/0 100.0 98.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00023 25210 26418 mdtH 0/0 100.0 98.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00068 25112 26344 mdtM 0/0 100.0 100.0 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00170 409 1620 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00026 6570 7601 mdtN 0/0 100.0 97.7 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00026 7601 9652 mdtO 0/0 100.0 96.6 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00026 9649 11115 mdtP 0/0 100.0 96.5 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00515 67 959 mphA 0/0 98.6 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00040 9970 10444 mphB 0/0 99.6 96.2 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00010 26429 28177 msbA 0/0 100.0 98.9 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00299 579 1409 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00019 1874 2842 pmrF 0/0 100.0 97.9 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00137 2777 3616 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00122 49 909 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00208 1712 2958 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00198 849 2054 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00065 22270 23757 tolC 0/0 100.0 97.9 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00152 1991 3157 ugd 0/0 100.0 96.9 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00017 29227 30870 yojI 0/0 100.0 97.8 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00268 1694 2554 (AGly)aac3-IIa 0/0 100.0 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig00137 1442 2230 (AGly)aadA5 0/0 100.0 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00015 14955 16259 (Bla)AmpC1_Ecoli 0/0 100.0 95.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00062 12898 14031 (Bla)AmpC2_Ecoli 0/0 100.0 98.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00005 30315 31472 (Bla)ampH_Ecoli 0/0 100.0 97.3 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00259 1703 2578 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00299 579 1409 (Bla)blaOXA-1 0/0 100.0 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00122 49 909 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00061 4963 6864 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 98.4 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00515 67 959 (MLS)mph(A) 0/0 98.6 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00176 223 882 (Phe)catA1 0/0 100.0 99.8 V00622:244-903 (Phe)catA1 NA
contig00137 2777 3616 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00208 1684 2958 (Tet)tetA 0/0 100.0 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00198 849 2054 (Tet)tetB 0/0 100.0 99.7 AB089594:1-1206 (Tet)tetB NA
contig00208 2989 3639 (Tet)tetR 0/0 100.0 100.0 HF545434:53576-54226 (Tet)tetR NA
contig00137 838 1311 (Tmt)dfrA17 0/0 100.0 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00268 1694 2554 aac(3)-IIe 0/0 100.0 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig00299 1540 2094 aac(6’)-Ib-D181Y 0/0 100.0 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00137 1442 2230 aadA5 0/0 100.0 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00259 1703 2578 blaCTX-M-15 0/0 100.0 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00062 12898 14031 blaEC-19 0/0 100.0 99.8 NG_049084.1 class C extended-spectrum beta-lactamase EC-19 CEPHALOSPORIN
contig00299 579 1409 blaOXA-1 0/0 100.0 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00122 49 909 blaTEM-1 0/0 100.0 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00176 223 882 catA1 0/0 100.0 99.8 NG_047582.1 type A-1 chloramphenicol O-acetyltransferase CHLORAMPHENICOL
contig00137 838 1311 dfrA17 0/0 100.0 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00515 67 959 mph(A) 0/0 98.6 100.0 NG_047985.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00137 2777 3616 sul1 0/0 100.0 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00208 1684 2883 tet(A) 0/0 100.0 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
contig00198 849 2054 tet(B) 0/0 100.0 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00268 1694 2554 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00005 120893 122086 ACRA 0/0 100.0 99.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00005 117721 120870 ACRB 0/0 100.0 99.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00015 49488 52601 ACRD 0/0 100.0 98.7 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00169 3 1160 ACRE 0/0 100.0 98.2 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00169 1172 4276 ACRF 0/0 100.0 97.5 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00009 354 1016 ACRS 0/0 100.0 97.6 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00005 30315 31472 AMPH 0/0 100.0 97.3 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00137 1442 2230 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00007 688 1507 BACA 0/0 99.8 97.2 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00173 3080 3801 BAER 0/0 99.9 97.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00173 1680 3083 BAES 0/0 100.0 92.1 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00017 2764 3954 BCR 0/0 100.0 96.6 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00062 12898 14031 BLAEC 0/0 100.0 99.8 MEG_1277 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00176 212 882 CATA 0/0 100.0 100.0 MEG_1593 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig00236 1264 1962 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00032 15958 16590 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00259 1454 2682 CTX 0/0 100.0 99.9 MEG_2393 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00137 838 1311 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00020 43734 44906 EMRA 0/0 100.0 98.1 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00020 44923 46461 EMRB 0/0 100.0 98.5 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00057 18757 19947 EMRD 0/0 100.0 97.8 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00060 21731 22894 EMRK 0/0 100.0 96.7 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00020 43077 43607 EMRR 0/0 100.0 99.4 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00060 20193 21731 EMRY 0/0 100.0 98.1 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00037 10125 11768 EPTA 0/0 100.0 98.2 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00060 23928 27521 EVGS 0/0 100.0 97.1 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00053 8537 9265 GADW 0/0 100.0 97.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00053 7344 8168 GADX 0/0 100.0 93.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00021 1492 1905 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00024 15684 16361 KDPE 0/0 100.0 95.6 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00030 23446 23835 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00030 22997 23431 MARR 0/0 100.0 98.6 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00006 41013 42245 MDFA 0/0 100.0 98.4 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00372 1 1156 MDTA 0/0 92.6 97.4 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00053 12766 13923 MDTE 0/0 100.0 99.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00053 9628 12741 MDTF 0/0 100.0 98.4 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00023 35049 36275 MDTG 0/0 100.0 98.7 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00023 25210 26418 MDTH 0/0 100.0 98.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00004 127847 128176 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00004 127495 127860 MDTJ 0/0 100.0 98.6 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00004 60494 61866 MDTK 0/0 99.9 97.9 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00068 25112 26344 MDTM 0/0 100.0 100.0 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00170 409 1620 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00026 6570 7601 MDTN 0/0 100.0 97.7 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00026 7601 9652 MDTO 0/0 100.0 96.6 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00026 9649 11115 MDTP 0/0 100.0 96.5 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00515 67 959 MPHA 0/0 98.6 100.0 MEG_4029 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00040 9970 10444 MPHB 0/0 99.6 96.2 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00010 26429 28177 MSBA 0/0 100.0 98.9 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00304 1812 2140 MVRC 0/0 98.8 91.8 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00299 579 1409 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00061 4963 6864 PBP2 0/0 100.0 98.4 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00015 14955 16259 PBP4B 0/0 100.0 95.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00019 1874 2842 PMRF 0/0 100.0 97.9 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00026 31316 31638 SOXS 0/0 99.7 97.8 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00137 2776 3743 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00208 1684 2958 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00198 849 2054 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00152 1991 3157 UGD 0/0 100.0 96.9 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00017 29227 30870 YOGI 0/0 100.0 97.8 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID099
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00110 137 925 aadA5_1 0/0 100 100.0 AF137361 aadA5 Streptomycin
contig00013 67769 68644 blaCTX-M-15_1 0/0 100 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00075 8178 9038 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00107 182 664 dfrA14_5 0/0 100 99.6 DQ388123 dfrA14 Trimethoprim
contig00110 1056 1529 dfrA17_1 0/0 100 100.0 FJ460238 dfrA17 Trimethoprim
contig00003 102470 103702 mdf(A)_1 0/0 100 99.0 Y08743 mdf(A)
contig00075 2160 2816 qnrS1_1 0/0 100 100.0 AB187515 qnrS1 Ciprofloxacin
contig00088 3459 4274 sul2_2 0/0 100 100.0 AY034138 sul2 Sulfamethoxazole
contig00075 9296 10087 sul3_2 0/0 100 100.0 AJ459418 sul3 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00110 137 925 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00014 38756 41905 acrB 0/0 100.0 99.5 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00002 135389 138502 acrD 0/0 100.0 99.3 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00016 65943 66764 bacA 0/0 100.0 100.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00007 128547 129269 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00007 127147 128550 baeS 0/0 100.0 99.9 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00020 7847 9220 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00009 176 808 CRP 0/0 100.0 99.8 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00013 67769 68644 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00107 182 664 dfrA14 0/0 100.0 99.8 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00110 1056 1529 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00015 23952 25124 emrA 0/0 100.0 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00015 25141 26679 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00006 10434 11489 emrK 0/0 100.0 99.8 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00015 23295 23825 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00006 11489 13027 emrY 0/0 100.0 99.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00024 7727 9370 eptA 0/0 100.0 99.5 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00014 37540 38733 Escherichia_coli_acrA 0/0 100.0 99.5 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00024 51583 52716 Escherichia_coli_ampC 0/0 100.0 97.4 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00002 169833 171137 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.7 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00059 15203 16360 Escherichia_coli_ampH 0/0 100.0 98.9 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00003 102470 103702 Escherichia_coli_mdfA 0/0 100.0 97.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00006 9296 9910 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00006 5698 9291 evgS 0/0 100.0 100.0 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00038 1784 2512 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00038 592 1416 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00087 938 1351 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00023 8068 8745 kdpE 0/0 100.0 99.4 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00027 44430 44813 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00007 118287 119534 mdtA 0/0 100.0 100.0 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00007 119534 122656 mdtB 0/0 100.0 98.9 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00007 122657 125734 mdtC 0/0 100.0 99.8 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00038 6013 7170 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00038 2875 5988 mdtF 0/0 100.0 99.9 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00001 138913 140139 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00001 148768 149976 mdtH 0/0 100.0 98.3 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00072 465 1676 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00019 71052 72083 mdtN 0/0 100.0 99.5 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00019 69001 71052 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00019 67538 69004 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00002 114229 114705 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00001 2196 3944 msbA 0/0 100.0 99.9 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00006 110978 111946 pmrF 0/0 100.0 99.9 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00075 2160 2816 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00088 3459 4274 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00075 9296 10087 sul3 0/0 100.0 100.0 FJ196385:9323-8531 Sul3 is a sulfonamide resistant dihydropteroate synthase similar to Sul1 and Sul2. Its resistance gene was found encoded in E. coli plasmid DNA of sulfonamide resistant isolates. sulfonamide
contig00075 8178 9038 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00016 42080 43567 tolC 0/0 100.0 100.0 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00051 22605 24248 yojI 0/0 100.0 99.9 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00110 137 925 (AGly)aadA5 0/0 100 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00002 169833 171137 (Bla)AmpC1_Ecoli 0/0 100 98.7 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00024 51583 52716 (Bla)AmpC2_Ecoli 0/0 100 97.4 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00059 15203 16360 (Bla)ampH_Ecoli 0/0 100 98.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00013 67769 68644 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00075 8178 9038 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00023 60539 62440 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 99.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00075 2160 2816 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00088 3459 4274 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00075 9296 10087 (Sul)sul3 0/0 100 100.0 HQ875016:7396-8187 (Sul)sul3 NA
contig00114 172 822 (Tet)tetR 0/0 100 99.8 HF545434:53576-54226 (Tet)tetR NA
contig00107 182 655 (Tmt)dfrA14 0/0 100 100.0 GU726917:72-545 (Tmt)dfrA14 NA
contig00110 1056 1529 (Tmt)dfrA17 0/0 100 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00110 137 925 aadA5 0/0 100 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00013 67769 68644 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00024 51583 52716 blaEC 0/0 100 98.2 NG_047496.1 BlaEC family class C beta-lactamase BETA-LACTAM
contig00075 8178 9038 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00107 182 655 dfrA14 0/0 100 100.0 NG_056035.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00110 1056 1529 dfrA17 0/0 100 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00075 2160 2816 qnrS1 0/0 100 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig00088 3459 4274 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00075 9296 10087 sul3 0/0 100 100.0 NG_048120.1 sulfonamide-resistant dihydropteroate synthase Sul3 SULFONAMIDE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00014 37540 38733 ACRA 0/0 100.0 99.5 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00014 38756 41905 ACRB 0/0 100.0 99.5 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00002 135389 138502 ACRD 0/0 100.0 99.3 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00059 15203 16360 AMPH 0/0 100.0 98.9 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00110 137 925 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00007 104022 105874 ASMA 0/0 100.0 98.0 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00016 65943 66764 BACA 0/0 100.0 100.0 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00007 128547 129269 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00007 127147 128550 BAES 0/0 100.0 99.9 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00042 14113 15303 BCR 0/0 100.0 100.0 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00024 51583 52716 BLAEC 0/0 100.0 98.2 MEG_1276 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00020 7152 7850 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00020 7847 9220 CPXAR 0/0 100.0 99.4 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00009 176 808 CRP 0/0 100.0 99.8 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00095 329 1217 CTX 0/0 100.0 95.4 MEG_2430 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00095 2404 3262 CTX 0/0 96.6 99.7 MEG_2430 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00107 182 655 DFRA 0/0 100.0 99.8 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00110 1056 1529 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00015 23952 25124 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00015 25141 26679 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00017 16747 17937 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00006 10326 11489 EMRK 0/0 100.0 99.8 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00015 23295 23825 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00006 11489 13027 EMRY 0/0 100.0 99.1 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00024 7727 9370 EPTA 0/0 100.0 99.5 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00006 5698 9291 EVGS 0/0 100.0 100.0 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00038 1784 2512 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00038 592 1416 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00087 938 1351 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00023 8068 8745 KDPE 0/0 100.0 99.4 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00027 44424 44813 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00027 43976 44410 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00003 102470 103702 MDFA 0/0 100.0 99.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00007 118287 119534 MDTA 0/0 100.0 100.0 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00007 119534 122656 MDTB 0/0 100.0 98.9 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00007 122657 125734 MDTC 0/0 100.0 99.8 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00038 6013 7170 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00038 2875 5988 MDTF 0/0 100.0 99.9 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00001 138913 140139 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00001 148768 149976 MDTH 0/0 100.0 98.3 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00011 115559 115888 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00011 115207 115572 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00011 43747 45120 MDTK 0/0 100.0 98.8 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00072 465 1676 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00019 71052 72083 MDTN 0/0 100.0 99.5 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00019 69001 71052 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00019 67538 69004 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00002 114229 114705 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00001 2196 3944 MSBA 0/0 100.0 99.9 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00023 60539 62440 PBP2 0/0 100.0 99.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00002 169833 171137 PBP4B 0/0 100.0 98.7 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00006 110978 111946 PMRF 0/0 100.0 99.9 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00075 2160 2816 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00026 21725 22594 ROBA 0/0 100.0 98.8 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00019 45260 45582 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00088 3459 4274 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00075 9296 10087 SULIII 0/0 100.0 100.0 MEG_6639 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULIII NA
contig00075 7811 9056 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00051 22605 24248 YOGI 0/0 100.0 99.9 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID24
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00061 2721 3522 aadA2_1 0/0 97.9 99.9 NC_010870 aadA2 Streptomycin
contig00085 1684 2559 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00061 1826 2323 dfrA12_8 0/0 100.0 100.0 AM040708 dfrA12 Trimethoprim
contig00088 266 1029 erm(B)_18 2/2 100.0 99.0 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig00002 84130 85362 mdf(A)_1 0/0 100.0 99.9 Y08743 mdf(A)
contig00061 10161 11091 mph(A)_2 2/10 100.0 98.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00061 4000 4866 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00083 850 2055 tet(B)_2 0/0 100.0 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00061 2743 3522 aadA2 0/0 100.0 99.9 AF156486:5012-5792 aadA2 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in K. pneumoniae Salmonella spp. Corynebacterium glutamicum C. freundii and Aeromonas spp. aminoglycoside
contig00001 99712 102861 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00009 135351 138464 acrD 0/0 100.0 100.0 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00011 127888 129045 acrE 0/0 100.0 99.9 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00011 129057 132161 acrF 0/0 100.0 99.9 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00011 126827 127489 acrS 0/0 100.0 100.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00008 90602 91423 bacA 0/0 100.0 99.9 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00041 29821 30543 baeR 0/0 100.0 99.6 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00041 28421 29824 baeS 0/0 100.0 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00013 61323 62696 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00010 15201 15833 CRP 0/0 100.0 99.7 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00085 1684 2559 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00061 1826 2323 dfrA12 0/0 100.0 100.0 GU585907.1:22103-21605 dfrA12 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00007 90366 91538 emrA 0/0 100.0 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00007 91555 93093 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00023 1067 2122 emrK 0/0 100.0 99.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00007 89709 90239 emrR 0/0 100.0 99.8 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00030 7740 9383 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00088 292 1037 ErmB 1/1 99.9 99.2 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig00001 98496 99689 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00006 107745 108878 Escherichia_coli_ampC 0/0 100.0 100.0 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00023 65523 66827 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 100.0 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00001 187826 188983 Escherichia_coli_ampH 0/0 100.0 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00002 84130 85362 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00023 2646 3260 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00023 3265 6858 evgS 0/0 100.0 99.4 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00036 1784 2512 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00036 592 1416 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00004 91674 92087 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00024 8166 8843 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00042 31344 31727 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00041 19561 20808 mdtA 0/0 100.0 97.9 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00041 20808 23930 mdtB 0/0 100.0 99.2 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00041 23931 27008 mdtC 0/0 100.0 99.0 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00036 6013 7170 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00036 2875 5988 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00032 18401 19627 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00032 28256 29464 mdtH 0/0 100.0 100.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00048 473 1684 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00015 21771 22802 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00015 22802 24853 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00015 24850 26316 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00061 10189 11091 mphA 0/0 99.7 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00009 114189 114665 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00002 167077 168825 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00003 173789 174757 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00061 4027 4866 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00083 850 2055 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00008 66737 68224 tolC 0/0 100.0 100.0 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00003 113686 115329 yojI 0/0 100.0 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00061 2743 3522 (AGly)aadA2 0/0 100.0 99.9 X68227:66-945 (AGly)aadA2 NA
contig00023 65523 66827 (Bla)AmpC1_Ecoli 0/0 100.0 100.0 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00006 107745 108878 (Bla)AmpC2_Ecoli 0/0 100.0 100.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00001 187826 188983 (Bla)ampH_Ecoli 0/0 100.0 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00085 1684 2559 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00024 60253 62154 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00088 292 1029 (MLS)erm(B) 0/0 100.0 99.6 M11180:714-1451 (MLS)erm(B) NA
contig00061 10189 11091 (MLS)mph(A) 0/0 99.7 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00061 4027 4866 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00083 850 2055 (Tet)tetB 0/0 100.0 99.7 AB089594:1-1206 (Tet)tetB NA
contig00061 1826 2323 (Tmt)dfrA12 0/0 100.0 100.0 Z21672:310-807 (Tmt)dfrA12 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00061 2731 3522 aadA2 0/0 100 100.0 NG_047343.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA2 STREPTOMYCIN
contig00085 1684 2559 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00006 107745 108878 blaEC 0/0 100 100.0 NG_047494.1 BlaEC family class C beta-lactamase BETA-LACTAM
contig00061 1826 2323 dfrA12 0/0 100 100.0 NG_047689.1 trimethoprim-resistant dihydrofolate reductase DfrA12 TRIMETHOPRIM
contig00088 292 1029 erm(B) 0/0 100 99.9 NG_047804.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) MACROLIDE
contig00061 10161 11091 mph(A) 2/10 100 98.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00061 4027 4866 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00083 850 2055 tet(B) 0/0 100 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00001 98496 99689 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00001 99712 102861 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00009 135351 138464 ACRD 0/0 100.0 100.0 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00011 127888 129045 ACRE 0/0 100.0 99.9 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00011 129057 132161 ACRF 0/0 100.0 99.9 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00011 126827 127489 ACRS 0/0 100.0 100.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00006 107745 108878 AMPC 0/0 100.0 100.0 MEG_728 Drugs:betalactams:Class_C_betalactamases:AMPC NA
contig00001 187826 188983 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00061 2721 3522 ANT3-DPRIME 0/0 97.9 99.9 MEG_975 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00041 5770 7622 ASMA 0/0 100.0 97.5 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00008 90602 91423 BACA 0/0 100.0 99.9 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00041 29821 30543 BAER 0/0 100.0 99.6 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00041 28421 29824 BAES 0/0 100.0 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00003 86709 87899 BCR 0/0 100.0 99.9 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00013 60628 61326 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00013 61323 62696 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00010 15201 15833 CRP 0/0 100.0 99.7 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00106 61 984 CTX 0/0 98.0 98.3 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00061 1826 2323 DFRA 0/0 100.0 100.0 MEG_2551 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00007 90366 91538 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00007 91555 93093 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00012 87171 88361 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00023 1067 2230 EMRK 0/0 100.0 99.7 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00007 89709 90239 EMRR 0/0 100.0 99.8 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00030 7740 9383 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00088 266 1029 ERMB 2/2 100.0 99.0 MEG_2801 Drugs:MLS:23S_rRNA_methyltransferases:ERMB NA
contig00023 3265 6858 EVGS 0/0 100.0 99.4 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00036 1784 2512 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00036 592 1416 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00004 91674 92087 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00024 8166 8843 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00042 31338 31727 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00042 30890 31324 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00002 84130 85362 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00041 19561 20808 MDTA 0/0 100.0 97.9 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00041 20808 23930 MDTB 0/0 100.0 99.2 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00041 23931 27008 MDTC 0/0 100.0 99.0 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00036 6013 7170 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00036 2875 5988 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00032 18401 19627 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00032 28256 29464 MDTH 0/0 100.0 100.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00039 1757 2086 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00039 2073 2438 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00026 31959 33332 MDTK 0/0 100.0 98.8 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00048 473 1684 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00015 21771 22802 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00015 22802 24853 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00015 24850 26316 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00061 10161 11091 MPHA 2/10 100.0 98.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00009 114189 114665 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00002 167077 168825 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00024 60253 62154 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00023 65523 66827 PBP4B 0/0 100.0 100.0 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00003 173789 174757 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00005 38665 39534 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00015 47933 48256 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00061 4026 4993 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00083 850 2055 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00003 113686 115329 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA


Summary figures

Presence/Absence of antibiotic resistance genes (coverage and identity > 90%) on each sample

Select the database
Resfinder
CARD
ARG-ANNOT
NCBI
MEGARES


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Plasmid Profiling


Field Description
Contig Contig name where the gene was found
Start Start position of the gene within the contig
End End position of the gene within the contig
Gene Antibiotic resistance gene
Gaps Gaps in subject (genome) and query (antibiotic resistance gene)
Coverage Proportion (%) of the gene covered
Identity Proportion (%) of exact nucleotide matches
Accession Accesion number of the antibiotic resistance gene
Product Antibiotic resistance gene product


Select sample

ID005zero
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00052 400 632 Col(BS512)_1 0/0 100.0 100.0 NC_010656 Col(BS512)_1__NC_010656
contig00037 3630 3771 Col156_1 0/0 92.2 98.6 NC_009781 Col156_1__NC_009781
contig00044 3338 3491 Col156_1 0/0 100.0 94.8 NC_009781 Col156_1__NC_009781
contig00031 14320 14707 IncFIA_1 0/0 100.0 99.7 AP001918 IncFIA_1__AP001918
contig00033 14397 15078 IncFIB(AP001918)_1 0/0 100.0 96.6 AP001918 IncFIB(AP001918)_1__AP001918
ID008
## [1] "NO PLASMID FOUND!!"
ID009
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00073 13248 13807 IncFIB(K)_1_Kpn3 0/0 100 98.8 JN233704 IncFIB(K)_1_Kpn3_JN233704
contig00039 16038 16776 IncL/M(pMU407)_1_pMU407 0/0 100 99.5 U27345 IncL/M(pMU407)_1_pMU407_U27345
ID011
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00230 459 613 IncB/O/K/Z_2 1/1 96.2 95.5 GU256641 IncB/O/K/Z_2__GU256641
contig00288 462 613 IncB/O/K/Z_3 0/0 100.0 99.3 GQ259888 IncB/O/K/Z_3__GQ259888
ID013
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00025 12158 12545 IncFIA_1 0/0 100.0 99.7 AP001918 IncFIA_1__AP001918
contig00309 1833 2514 IncFIB(AP001918)_1 0/0 100.0 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00413 3304 3553 IncFII_1 0/0 95.8 100.0 AY458016 IncFII_1__AY458016
ID014at24
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00065 1438 1579 Col156_1 0/0 92.2 98.6 NC_009781 Col156_1__NC_009781
contig00253 4077 4230 Col156_1 0/0 100.0 94.8 NC_009781 Col156_1__NC_009781
contig00381 414 620 Col8282_1 0/0 100.0 100.0 DQ995352 Col8282_1__DQ995352
contig01853 681 1068 IncFIA_1 0/0 100.0 99.7 AP001918 IncFIA_1__AP001918
contig00043 8903 9584 IncFIB(AP001918)_1 0/0 100.0 96.9 AP001918 IncFIB(AP001918)_1__AP001918
contig00003 7323 7696 IncX1_1 0/0 100.0 98.4 EU370913 IncX1_1__EU370913
ID015HW
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00101 433 694 Col(MG828)_1 0/0 100 92.8 NC_008486 Col(MG828)_1__NC_008486
contig00045 3365 3752 IncFIA_1 0/0 100 99.7 AP001918 IncFIA_1__AP001918
contig00045 26541 27222 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00062 3328 3588 IncFII(pAMA1167-NDM-5)_1_pAMA1167-NDM-5 0/0 100 98.1 CP024805.1 IncFII(pAMA1167-NDM-5)_1_pAMA1167-NDM-5_CP024805.1
ID015at48
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00115 433 694 Col(MG828)_1 0/0 100 92.8 NC_008486 Col(MG828)_1__NC_008486
contig00073 9286 9673 IncFIA_1 0/0 100 99.7 AP001918 IncFIA_1__AP001918
contig00074 8768 9449 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00070 3328 3588 IncFII(pAMA1167-NDM-5)_1_pAMA1167-NDM-5 0/0 100 98.1 CP024805.1 IncFII(pAMA1167-NDM-5)_1_pAMA1167-NDM-5_CP024805.1
ID016at24
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00070 14298 14685 IncFIA_1 0/0 100 99.7 AP001918 IncFIA_1__AP001918
contig00097 1569 2250 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00094 3324 3584 IncFII_1 0/0 100 100.0 AY458016 IncFII_1__AY458016
contig00061 13995 14136 IncI1_1_Alpha 0/0 100 97.9 AP005147 IncI1_1_Alpha_AP005147
ID017at48
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00211 4 114 Col440I_1 0/0 97.4 92.8 CP023920.1 Col440I_1__CP023920.1
contig00092 14297 14684 IncFIA_1 0/0 100.0 99.7 AP001918 IncFIA_1__AP001918
contig00144 1833 2514 IncFIB(AP001918)_1 0/0 100.0 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00091 3323 3583 IncFII_1 0/0 100.0 100.0 AY458016 IncFII_1__AY458016
contig00096 1715 1856 IncI1_1_Alpha 0/0 100.0 97.9 AP005147 IncI1_1_Alpha_AP005147
ID018at24
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00067 3630 3771 Col156_1 0/0 92.2 98.6 NC_009781 Col156_1__NC_009781
contig00077 3338 3491 Col156_1 0/0 100.0 94.8 NC_009781 Col156_1__NC_009781
contig00062 10944 11331 IncFIA_1 0/0 100.0 99.7 AP001918 IncFIA_1__AP001918
contig00059 14397 15078 IncFIB(AP001918)_1 0/0 100.0 96.6 AP001918 IncFIB(AP001918)_1__AP001918
ID020at24
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00105 366 476 Col440I_1 0/0 97.4 93.7 CP023920.1 Col440I_1__CP023920.1
contig00031 4855 5115 IncFII(pCoo)_1_pCoo 1/1 99.6 96.6 CR942285 IncFII(pCoo)_1_pCoo_CR942285
contig00054 24232 24605 IncX2_1 0/0 100.0 100.0 JQ269335 IncX2_1__JQ269335
contig00078 1713 2477 IncY_1 0/0 100.0 99.5 K02380 IncY_1__K02380
ID021at24
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00131 428 686 Col(MG828)_1 1/1 98.8 95.0 NC_008486 Col(MG828)_1__NC_008486
contig00106 4075 4228 Col156_1 0/0 100.0 94.8 NC_009781 Col156_1__NC_009781
contig00110 414 620 Col8282_1 0/0 100.0 100.0 DQ995352 Col8282_1__DQ995352
contig00111 1730 1860 ColRNAI_1 1/1 100.0 90.1 DQ298019 ColRNAI_1__DQ298019
contig00064 6481 6640 IncB/O/K/Z_2 0/0 100.0 100.0 GU256641 IncB/O/K/Z_2__GU256641
contig00102 1412 1672 IncFII_1 0/0 100.0 100.0 AY458016 IncFII_1__AY458016
ID025III
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00807 789 1176 IncFIA_1 0/0 100.0 99.7 AP001918 IncFIA_1__AP001918
contig00322 1 616 IncFIB(AP001918)_1 0/0 90.3 98.5 AP001918 IncFIB(AP001918)_1__AP001918
contig00530 768 909 IncI1_1_Alpha 0/0 100.0 97.9 AP005147 IncI1_1_Alpha_AP005147
ID025II
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00072 14298 14685 IncFIA_1 0/0 100 99.7 AP001918 IncFIA_1__AP001918
contig00095 1417 2098 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00044 38031 38291 IncFII_1 0/0 100 100.0 AY458016 IncFII_1__AY458016
contig00057 15823 15964 IncI1_1_Alpha 0/0 100 97.9 AP005147 IncI1_1_Alpha_AP005147
ID025I
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00058 14298 14685 IncFIA_1 0/0 100 99.7 AP001918 IncFIA_1__AP001918
contig00081 1833 2514 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00038 38031 38291 IncFII_1 0/0 100 100.0 AY458016 IncFII_1__AY458016
contig00048 16406 16547 IncI1_1_Alpha 0/0 100 97.9 AP005147 IncI1_1_Alpha_AP005147
ID026
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00090 1088 1198 Col440I_1 0/0 97.4 92.8 CP023920.1 Col440I_1__CP023920.1
contig00056 14298 14685 IncFIA_1 0/0 100.0 99.7 AP001918 IncFIA_1__AP001918
contig00075 1833 2514 IncFIB(AP001918)_1 0/0 100.0 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00039 38451 38711 IncFII_1 0/0 100.0 100.0 AY458016 IncFII_1__AY458016
contig00054 12304 12445 IncI1_1_Alpha 0/0 100.0 97.9 AP005147 IncI1_1_Alpha_AP005147
ID027
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00062 14298 14685 IncFIA_1 0/0 100 99.7 AP001918 IncFIA_1__AP001918
contig00081 1833 2514 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00040 38031 38291 IncFII_1 0/0 100 100.0 AY458016 IncFII_1__AY458016
contig00052 15823 15964 IncI1_1_Alpha 0/0 100 97.9 AP005147 IncI1_1_Alpha_AP005147
ID031
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00072 433 694 Col(MG828)_1 0/0 100.0 93.1 NC_008486 Col(MG828)_1__NC_008486
contig00037 5825 5979 IncB/O/K/Z_2 1/1 96.2 96.1 GU256641 IncB/O/K/Z_2__GU256641
contig00049 1436 2117 IncFIB(AP001918)_1 0/0 100.0 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00031 7275 7648 IncX1_1 0/0 100.0 98.4 EU370913 IncX1_1__EU370913
ID032I
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00079 433 694 Col(MG828)_1 0/0 100 93.5 NC_008486 Col(MG828)_1__NC_008486
contig00063 4077 4230 Col156_1 0/0 100 94.8 NC_009781 Col156_1__NC_009781
contig00042 16297 16684 IncFIA_1 0/0 100 99.7 AP001918 IncFIA_1__AP001918
contig00042 5009 5690 IncFIB(AP001918)_1 0/0 100 99.7 AP001918 IncFIB(AP001918)_1__AP001918
ID033I
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00068 1039 1923 p0111_1 0/0 100 98.6 AP010962 p0111_1__AP010962
ID034II
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00055 14298 14685 IncFIA_1 0/0 100 99.7 AP001918 IncFIA_1__AP001918
contig00078 1833 2514 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00035 41580 41840 IncFII_1 0/0 100 100.0 AY458016 IncFII_1__AY458016
contig00046 15823 15964 IncI1_1_Alpha 0/0 100 97.9 AP005147 IncI1_1_Alpha_AP005147
ID034I
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00100 1088 1198 Col440I_1 0/0 97.4 92.8 CP023920.1 Col440I_1__CP023920.1
contig00061 14298 14685 IncFIA_1 0/0 100.0 99.7 AP001918 IncFIA_1__AP001918
contig00083 1833 2514 IncFIB(AP001918)_1 0/0 100.0 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00040 38031 38291 IncFII_1 0/0 100.0 100.0 AY458016 IncFII_1__AY458016
contig00071 57 198 IncI1_1_Alpha 0/0 100.0 97.9 AP005147 IncI1_1_Alpha_AP005147
ID037
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00112 519 632 Col440I_1 0/0 100 90.3 CP023920.1 Col440I_1__CP023920.1
contig00113 155 268 Col440I_1 0/0 100 91.2 CP023920.1 Col440I_1__CP023920.1
contig00105 255 768 IncN_1 0/0 100 99.8 AY046276 IncN_1__AY046276
ID043I
## [1] "NO PLASMID FOUND!!"
ID045
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00024 56680 56832 IncB/O/K/Z_2 1/1 95 96.1 GU256641 IncB/O/K/Z_2__GU256641
contig00049 5210 5891 IncFIB(AP001918)_1 0/0 100 97.8 AP001918 IncFIB(AP001918)_1__AP001918
contig00069 278 791 IncN_1 0/0 100 100.0 AY046276 IncN_1__AY046276
contig00062 9173 9546 IncX2_1 0/0 100 99.7 JQ269335 IncX2_1__JQ269335
ID047
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00114 400 632 Col(BS512)_1 0/0 100.0 100.0 NC_010656 Col(BS512)_1__NC_010656
contig00120 429 690 Col(MG828)_1 0/0 100.0 91.6 NC_008486 Col(MG828)_1__NC_008486
contig00072 3584 3725 Col156_1 0/0 92.2 98.6 NC_009781 Col156_1__NC_009781
contig00046 19761 20148 IncFIA_1 0/0 100.0 99.7 AP001918 IncFIA_1__AP001918
contig00046 8473 9154 IncFIB(AP001918)_1 0/0 100.0 99.7 AP001918 IncFIB(AP001918)_1__AP001918
contig00033 41587 41847 IncFII(pRSB107)_1_pRSB107 0/0 100.0 100.0 AJ851089 IncFII(pRSB107)_1_pRSB107_AJ851089
ID050
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00082 4078 4231 Col156_1 0/0 100 94.8 NC_009781 Col156_1__NC_009781
contig00057 9159 9542 IncFIA_1 0/0 99 99.7 AP001918 IncFIA_1__AP001918
contig00064 8464 9145 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
ID051
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00041 6604 6757 Col156_1 0/0 100 98.7 NC_009781 Col156_1__NC_009781
contig00139 3382 4063 IncFIB(AP001918)_1 0/0 100 96.6 AP001918 IncFIB(AP001918)_1__AP001918
contig00006 17801 18443 IncFIB(pB171)_1_pB171 0/0 100 99.2 AB024946 IncFIB(pB171)_1_pB171_AB024946
contig00007 5323 5696 IncX1_1 0/0 100 98.9 EU370913 IncX1_1__EU370913
ID052
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00052 16919 17561 IncFIB(pB171)_1_pB171 0/0 100 99.4 AB024946 IncFIB(pB171)_1_pB171_AB024946
contig00064 18329 18589 IncFII(pRSB107)_1_pRSB107 0/0 100 100.0 AJ851089 IncFII(pRSB107)_1_pRSB107_AJ851089
ID057
## [1] "NO PLASMID FOUND!!"
ID058
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00069 4081 4845 IncY_1 0/0 100 98.8 K02380 IncY_1__K02380
contig00085 2535 3419 p0111_1 0/0 100 98.6 AP010962 p0111_1__AP010962
ID066
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00072 400 632 Col(BS512)_1 0/0 100.0 100.0 NC_010656 Col(BS512)_1__NC_010656
contig00058 4076 4229 Col156_1 0/0 100.0 94.8 NC_009781 Col156_1__NC_009781
contig00048 3426 3813 IncFIA_1 0/0 100.0 99.7 AP001918 IncFIA_1__AP001918
contig00050 6524 7205 IncFIB(AP001918)_1 0/0 100.0 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00068 3322 3557 IncFII(pAMA1167-NDM-5)_1_pAMA1167-NDM-5 0/0 90.4 97.9 CP024805.1 IncFII(pAMA1167-NDM-5)_1_pAMA1167-NDM-5_CP024805.1
contig00046 12575 12948 IncX1_1 0/0 100.0 94.9 EU370913 IncX1_1__EU370913
ID070
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00128 431 692 Col(MG828)_1 0/0 100.0 92.8 NC_008486 Col(MG828)_1__NC_008486
contig00075 11383 11493 Col440I_1 0/0 97.4 92.8 CP023920.1 Col440I_1__CP023920.1
contig00070 9148 9531 IncFIA_1 0/0 99.0 99.7 AP001918 IncFIA_1__AP001918
contig00105 1834 2515 IncFIB(AP001918)_1 0/0 100.0 98.4 AP001918 IncFIB(AP001918)_1__AP001918
ID073
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00167 428 686 Col(MG828)_1 1/1 98.8 95 NC_008486 Col(MG828)_1__NC_008486
ID081
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00092 4077 4230 Col156_1 0/0 100 94.8 NC_009781 Col156_1__NC_009781
contig00071 9148 9531 IncFIA_1 0/0 99 99.7 AP001918 IncFIA_1__AP001918
contig00074 8463 9144 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00055 1279 1990 IncX4_2 0/0 100 99.0 FN543504 IncX4_2__FN543504
ID096I
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00185 3435 3994 IncFIB(K)_1_Kpn3 0/0 100 100 JN233704 IncFIB(K)_1_Kpn3_JN233704
ID098
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00307 400 632 Col(BS512)_1 0/0 100 100.0 NC_010656 Col(BS512)_1__NC_010656
contig00183 3981 4111 ColRNAI_1 1/1 100 90.1 DQ298019 ColRNAI_1__DQ298019
contig00124 10533 10920 IncFIA_1 0/0 100 99.7 AP001918 IncFIA_1__AP001918
contig00199 1834 2515 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00204 204 464 IncFII(pRSB107)_1_pRSB107 0/0 100 100.0 AJ851089 IncFII(pRSB107)_1_pRSB107_AJ851089
ID099
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00085 4314 4687 IncX1_1 0/0 100 98.7 EU370913 IncX1_1__EU370913
ID24
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00081 1088 1198 Col440I_1 0/0 97.4 92.8 CP023920.1 Col440I_1__CP023920.1
contig00049 14298 14685 IncFIA_1 0/0 100.0 99.7 AP001918 IncFIA_1__AP001918
contig00069 1833 2514 IncFIB(AP001918)_1 0/0 100.0 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00034 38031 38291 IncFII_1 0/0 100.0 100.0 AY458016 IncFII_1__AY458016
contig00044 15823 15964 IncI1_1_Alpha 0/0 100.0 97.9 AP005147 IncI1_1_Alpha_AP005147


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Virulence Factor Determination


Field Description
Contig Contig name where the gene was found
Start Start position of the gene within the contig
End End position of the gene within the contig
Gene Antibiotic resistance gene
Coverage Proportion (%) of the gene covered
Identity Proportion (%) of exact nucleotide matches
Accession Accesion number of the antibiotic resistance gene
Product Antibiotic resistance gene product


Select the sample

ID005zero
Contig Start End Strand Gene Coverage Identity Accession Product
contig00020 74873 76301 + aslA 100.0 98.5 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00006 177711 179657 - chuA 100.0 99.7 NP_756170 (chuA) Outer membrane heme/hemoglobin receptor ChuA [Chu (VF0227)] [Escherichia coli CFT073]
contig00006 176634 177662 - chuS 100.0 99.5 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00006 180299 181291 + chuT 100.0 99.7 NP_756175 (chuT) periplasmic heme-binding protein ChuT [Chu (VF0227)] [Escherichia coli CFT073]
contig00006 183827 184819 + chuU 100.0 99.5 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00006 184786 185586 + chuV 100.0 99.8 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00006 181311 182648 + chuW 100.0 99.1 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00006 182661 183155 + chuX 100.0 100.0 NP_756177 (chuX) putative heme-binding protein ChuX [Chu (VF0227)] [Escherichia coli CFT073]
contig00006 183155 183778 + chuY 100.0 98.4 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00007 138927 139382 + csgB 99.8 83.6 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00007 137524 138174 - csgD 100.0 81.3 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00007 136689 137105 - csgF 99.0 80.8 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00007 135829 136662 - csgG 100.0 83.3 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00003 289871 290617 - entA 100.0 98.4 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 290617 291474 - entB 100.0 99.2 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 293108 294295 - entC 100.0 99.7 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 308753 309414 + entD 85.9 92.8 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 291488 293098 - entE 100.0 99.1 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 300972 304825 - entF 99.3 98.4 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 295432 296682 - entS 100.0 98.8 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00013 22805 27055 - fdeC 100.0 99.6 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00003 306488 308728 + fepA 100.0 98.9 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 294472 295428 + fepB 100.0 99.8 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 298783 299598 + fepC 100.0 99.4 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 296781 297797 + fepD 100.0 99.5 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 297794 298786 + fepG 100.0 99.8 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 305043 306245 - fes 100.0 99.8 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00002 319718 320323 - fimA 100.0 92.2 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 321822 322424 - fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 318352 319077 - fimC 100.0 98.5 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 315649 318285 - fimD 100.0 98.3 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 320748 321344 - fimE 100.0 98.7 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 315109 315642 - fimF 100.0 97.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 314593 315096 - fimG 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 313671 314582 - fimH 100.0 97.2 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 319114 319653 - fimI 100.0 98.3 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00001 512185 514206 - fyuA 100.0 100.0 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00008 187741 188571 + gspC 100.0 93.9 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 188811 190661 + gspD 100.0 96.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 190661 192154 + gspE 100.0 94.9 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 192154 193353 + gspF 100.0 94.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 193394 193849 + gspG 100.0 96.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 193886 194416 + gspH 100.0 94.7 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 194413 194784 + gspI 100.0 92.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 194817 195386 + gspJ 100.0 94.4 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 195383 196360 + gspK 100.0 96.6 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 196675 197535 + gspL 100.0 94.8 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 197651 198072 + gspM 99.8 93.6 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 517815 527306 - irp1 100.0 99.3 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 527396 533500 - irp2 100.0 98.9 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00028 10165 11946 + iucA 100.0 99.8 NP_709454 (iucA) aerobactin synthesis protein IucA [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00028 11947 12894 + iucB 100.0 99.8 NP_709455 (iucB) aerobactin synthesis protein IucB [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00028 12894 14636 + iucC 100.0 98.2 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00028 14633 15954 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00028 15892 18193 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00008 211226 212902 - kpsD 100.0 99.0 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00008 199132 199908 + kpsM 100.0 99.9 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00008 199905 200564 + kpsT 100.0 100.0 AAA24047 (kpsT) KpsT [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00007 67818 68858 - ompA 100.0 99.5 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00028 747 1060 - papB 99.7 98.4 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00028 1465 1698 + papI 100.0 94.9 NP_755468 (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00059 256 807 + papX 100.0 97.5 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00028 19128 23028 + sat 100.0 99.5 NP_755494 (sat) Aecreted auto transpoter toxin [Sat (VF0231)] [Escherichia coli CFT073]
contig00037 8438 9576 + senB 99.9 99.7 YP_406304 (senB) enterotoxin [ShET2 (VF0258)] [Shigella flexneri 2a str. 301]
contig00013 46763 50895 + vat 100.0 99.7 NP_752330 (vat) Haemoglobin protease [Tsh (VF0233)] [Escherichia coli CFT073]
contig00013 42393 43146 + yagV/ecpE 99.7 98.4 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00013 40826 42469 + yagW/ecpD 100.0 99.2 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00013 38311 40836 + yagX/ecpC 100.0 97.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00013 37617 38285 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00013 36973 37560 + yagZ/ecpA 100.0 98.5 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 533691 534650 - ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 514337 515914 - ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 534817 536619 + ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 536606 538408 + ybtQ 100.0 99.8 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 539709 541013 + ybtS 100.0 99.8 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 515918 516721 - ybtT 100.0 99.5 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 516718 517818 - ybtU 100.0 99.7 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 538401 539681 + ybtX 100.0 99.6 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00013 36308 36898 + ykgK/ecpR 100.0 99.3 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID008
## Error in read.table("ID008_vfdb.tab", header = T, sep = "\t", dec = ".", : no lines available in input
Contig Start End Strand Gene Coverage Identity Accession Product
contig00020 74873 76301 + aslA 100.0 98.5 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00006 177711 179657 - chuA 100.0 99.7 NP_756170 (chuA) Outer membrane heme/hemoglobin receptor ChuA [Chu (VF0227)] [Escherichia coli CFT073]
contig00006 176634 177662 - chuS 100.0 99.5 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00006 180299 181291 + chuT 100.0 99.7 NP_756175 (chuT) periplasmic heme-binding protein ChuT [Chu (VF0227)] [Escherichia coli CFT073]
contig00006 183827 184819 + chuU 100.0 99.5 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00006 184786 185586 + chuV 100.0 99.8 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00006 181311 182648 + chuW 100.0 99.1 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00006 182661 183155 + chuX 100.0 100.0 NP_756177 (chuX) putative heme-binding protein ChuX [Chu (VF0227)] [Escherichia coli CFT073]
contig00006 183155 183778 + chuY 100.0 98.4 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00007 138927 139382 + csgB 99.8 83.6 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00007 137524 138174 - csgD 100.0 81.3 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00007 136689 137105 - csgF 99.0 80.8 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00007 135829 136662 - csgG 100.0 83.3 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00003 289871 290617 - entA 100.0 98.4 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 290617 291474 - entB 100.0 99.2 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 293108 294295 - entC 100.0 99.7 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 308753 309414 + entD 85.9 92.8 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 291488 293098 - entE 100.0 99.1 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 300972 304825 - entF 99.3 98.4 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 295432 296682 - entS 100.0 98.8 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00013 22805 27055 - fdeC 100.0 99.6 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00003 306488 308728 + fepA 100.0 98.9 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 294472 295428 + fepB 100.0 99.8 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 298783 299598 + fepC 100.0 99.4 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 296781 297797 + fepD 100.0 99.5 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 297794 298786 + fepG 100.0 99.8 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 305043 306245 - fes 100.0 99.8 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00002 319718 320323 - fimA 100.0 92.2 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 321822 322424 - fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 318352 319077 - fimC 100.0 98.5 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 315649 318285 - fimD 100.0 98.3 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 320748 321344 - fimE 100.0 98.7 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 315109 315642 - fimF 100.0 97.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 314593 315096 - fimG 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 313671 314582 - fimH 100.0 97.2 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 319114 319653 - fimI 100.0 98.3 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00001 512185 514206 - fyuA 100.0 100.0 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00008 187741 188571 + gspC 100.0 93.9 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 188811 190661 + gspD 100.0 96.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 190661 192154 + gspE 100.0 94.9 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 192154 193353 + gspF 100.0 94.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 193394 193849 + gspG 100.0 96.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 193886 194416 + gspH 100.0 94.7 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 194413 194784 + gspI 100.0 92.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 194817 195386 + gspJ 100.0 94.4 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 195383 196360 + gspK 100.0 96.6 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 196675 197535 + gspL 100.0 94.8 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 197651 198072 + gspM 99.8 93.6 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 517815 527306 - irp1 100.0 99.3 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 527396 533500 - irp2 100.0 98.9 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00028 10165 11946 + iucA 100.0 99.8 NP_709454 (iucA) aerobactin synthesis protein IucA [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00028 11947 12894 + iucB 100.0 99.8 NP_709455 (iucB) aerobactin synthesis protein IucB [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00028 12894 14636 + iucC 100.0 98.2 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00028 14633 15954 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00028 15892 18193 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00008 211226 212902 - kpsD 100.0 99.0 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00008 199132 199908 + kpsM 100.0 99.9 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00008 199905 200564 + kpsT 100.0 100.0 AAA24047 (kpsT) KpsT [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00007 67818 68858 - ompA 100.0 99.5 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00028 747 1060 - papB 99.7 98.4 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00028 1465 1698 + papI 100.0 94.9 NP_755468 (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00059 256 807 + papX 100.0 97.5 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00028 19128 23028 + sat 100.0 99.5 NP_755494 (sat) Aecreted auto transpoter toxin [Sat (VF0231)] [Escherichia coli CFT073]
contig00037 8438 9576 + senB 99.9 99.7 YP_406304 (senB) enterotoxin [ShET2 (VF0258)] [Shigella flexneri 2a str. 301]
contig00013 46763 50895 + vat 100.0 99.7 NP_752330 (vat) Haemoglobin protease [Tsh (VF0233)] [Escherichia coli CFT073]
contig00013 42393 43146 + yagV/ecpE 99.7 98.4 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00013 40826 42469 + yagW/ecpD 100.0 99.2 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00013 38311 40836 + yagX/ecpC 100.0 97.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00013 37617 38285 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00013 36973 37560 + yagZ/ecpA 100.0 98.5 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 533691 534650 - ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 514337 515914 - ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 534817 536619 + ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 536606 538408 + ybtQ 100.0 99.8 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 539709 541013 + ybtS 100.0 99.8 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 515918 516721 - ybtT 100.0 99.5 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 516718 517818 - ybtU 100.0 99.7 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 538401 539681 + ybtX 100.0 99.6 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00013 36308 36898 + ykgK/ecpR 100.0 99.3 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID009
Contig Start End Strand Gene Coverage Identity Accession Product
contig00214 5276 6021 - entA 99.6 80.3 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00214 6031 6882 - entB 99.3 82.0 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00435 165 936 + fepC 94.6 80.0 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00018 17974 19044 - ompA 100.0 83.3 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00134 274 1027 - yagV/ecpE 99.7 84.3 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00134 953 2596 - yagW/ecpD 100.0 88.2 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00134 2586 5111 - yagX/ecpC 100.0 87.0 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00134 5137 5805 - yagY/ecpB 100.0 87.7 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00134 5867 6450 - yagZ/ecpA 99.3 90.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00134 6524 7104 - ykgK/ecpR 98.3 86.9 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID011
Contig Start End Strand Gene Coverage Identity Accession Product
contig00011 49319 50747 + aslA 100.0 92.9 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00052 8086 8541 + csgB 99.8 83.6 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00052 6681 7331 - csgD 100.0 81.3 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00052 5846 6262 - csgF 99.0 81.0 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00052 4986 5819 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00060 8729 9475 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00060 9475 10332 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00060 11966 13153 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00060 27797 28567 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00060 10346 11956 - entE 100.0 95.4 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00060 20016 23869 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00060 14476 15726 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00003 8 1906 - espL1 100.0 97.5 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 103094 105279 + espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00074 6773 7827 + espR1 83.7 93.9 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00001 144243 145663 + espX1 99.9 95.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 73298 74878 - espX4 100.0 96.5 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 42482 43774 + espX5 100.0 96.6 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00001 105181 105977 - espY1 99.9 88.6 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00096 4096 8344 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00060 25532 27772 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00060 13516 14472 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00060 17827 18642 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00060 15825 16841 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00060 16838 17830 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00060 24087 25289 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00130 2762 3373 - fimA 100.0 88.2 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00081 263 865 - fimB 100.0 97.7 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00130 1396 2121 - fimC 100.0 98.6 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00130 3800 4394 - fimE 99.7 99.2 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00070 20536 21069 - fimF 100.0 97.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00070 20020 20523 - fimG 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00070 19098 20009 - fimH 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00130 2158 2697 - fimI 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00068 7493 9274 - iucA 100.0 99.9 NP_709454 (iucA) aerobactin synthesis protein IucA [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00068 6545 7492 - iucB 100.0 99.9 NP_709455 (iucB) aerobactin synthesis protein IucB [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00068 4803 6545 - iucC 100.0 99.9 NP_709456 (iucC) aerobactin synthesis protein IucC [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00068 3469 4806 - iucD 100.0 99.8 NP_709457 (iucD) aerobactin synthesis protein IucC lysine 6-monooxygenase [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00068 1268 3547 - iutA 100.0 99.6 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00010 74099 75139 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00096 12030 12617 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00096 11365 11955 + ykgK/ecpR 100.0 97.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID013
Contig Start End Strand Gene Coverage Identity Accession Product
contig00394 1991 3419 + aslA 100.0 97.2 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00072 780 1808 - chuS 100.0 97.8 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00072 4445 5437 + chuT 100.0 98.5 NP_756175 (chuT) periplasmic heme-binding protein ChuT [Chu (VF0227)] [Escherichia coli CFT073]
contig00072 7973 8965 + chuU 100.0 99.3 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00072 8932 9732 + chuV 100.0 99.6 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00072 5457 6794 + chuW 100.0 98.1 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00072 7301 7924 + chuY 100.0 97.9 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00972 995 1450 - csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00414 598 1248 + csgD 100.0 81.3 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00414 1667 2083 + csgF 99.0 81.0 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00414 2110 2943 + csgG 100.0 82.7 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00082 3489 4235 + entA 100.0 96.5 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00082 2632 3489 + entB 100.0 98.7 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00082 1 998 + entC 84.0 97.0 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00023 3909 4679 - entD 100.0 94.3 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01564 212 881 - entD 86.9 94.8 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00082 1008 2618 + entE 100.0 98.6 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00023 8607 12460 + entF 99.3 97.3 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00551 1305 2555 - entS 100.0 95.8 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00101 6057 7955 - espL1 100.0 96.2 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00333 2661 3911 + espR1 99.3 94.6 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00379 2299 3438 - espR3 100.0 96.4 NP_288394 (espR3) Type III secretion system effector espR3 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00154 1505 3085 + espX4 100.0 94.9 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00052 6106 8514 + espY4 99.8 89.4 NP_290352 (espY4) Type III secretion system effector EspY4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00184 1435 5648 + fdeC 99.1 92.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00023 4704 6944 - fepA 100.0 98.0 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00551 345 1301 + fepB 100.0 98.1 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00023 13833 14648 - fepC 100.0 97.1 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00023 15634 16482 - fepD 83.5 96.7 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00023 14645 15637 - fepG 100.0 95.3 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00023 7187 8389 + fes 100.0 99.3 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00958 275 1477 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00179 598 1131 + fimF 100.0 97.8 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00179 1144 1647 + fimG 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00179 1658 2569 + fimH 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 5862 7883 + fyuA 100.0 100.0 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 42667 43497 - gspC 100.0 94.8 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 40577 42427 - gspD 100.0 94.8 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 39084 40577 - gspE 100.0 94.5 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 37885 39084 - gspF 100.0 94.1 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 37389 37844 - gspG 100.0 96.3 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 36822 37352 - gspH 100.0 97.2 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 36454 36825 - gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 35852 36421 - gspJ 100.0 96.3 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 34878 35855 - gspK 100.0 97.2 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 33703 34563 - gspL 100.0 95.0 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 33166 33587 - gspM 99.8 95.7 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00031 6058 7845 + iucA 100.0 94.3 NP_755502 (iucA) aerobactin siderophore biosynthesis protein IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00031 7846 8793 + iucB 100.0 95.7 NP_755501 (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00031 8793 10535 + iucC 100.0 96.1 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00031 10532 11853 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00031 11791 14092 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00001 19000 20676 + kpsD 100.0 98.0 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00001 31328 32104 - kpsM 100.0 92.7 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig01031 64 1116 - ompA 100.0 95.5 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00796 957 1508 + papX 100.0 97.5 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00072 1857 3839 - shuA 100.0 98.3 YP_405019 (shuA) outer membrane heme/hemoglobin receptor ShuA [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00072 6807 7301 + shuX 100.0 96.2 YP_405016 (shuX) shu locus protein ShuX [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00252 3222 3975 - yagV/ecpE 99.7 97.6 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00207 2928 5453 + yagX/ecpC 100.0 98.5 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00207 2234 2902 + yagY/ecpB 100.0 98.8 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00207 1589 2176 + yagZ/ecpA 100.0 99.0 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00769 1 777 + ybtA 80.9 100.0 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00002 4154 5731 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00750 1 1778 - ybtP 98.6 99.7 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig01030 1 1498 + ybtQ 83.1 100.0 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00756 815 2070 + ybtS 96.2 97.5 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00002 3347 4150 + ybtT 100.0 99.8 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00002 2250 3350 + ybtU 100.0 99.7 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00207 924 1514 + ykgK/ecpR 100.0 99.7 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID014at24
Contig Start End Strand Gene Coverage Identity Accession Product
contig00066 9207 9512 - afaA 100.0 100.0 CAW30797 (afaA) fimbrial major subunit AfaA [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00066 8172 8916 - afaB-I 100.0 99.6 CAW30798 (afaB-I) chaperone AfaB [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00066 5497 8079 - afaC-I 100.0 99.9 CAW30799 (afaC-I) usher AfaC [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00066 5038 5481 - afaD 100.0 100.0 CAW30800 (afaD) AfaD [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00066 3800 4285 - afaE-I 100.0 99.8 CAW30801 (afaE-I) AFA-I adhesin [Afa/Dr family (VF0212)] [Escherichia coli O25b:H4 str. FV9863]
contig00161 2910 4338 + aslA 100.0 92.9 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig01375 214 1602 + aslA 97.2 98.1 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00114 6328 6651 + cesAB 100.0 100.0 NP_290286 (cesAB) chaperone for EspA and EspB [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 18724 19179 + cesD 100.0 99.8 NP_290276 (cesD) chaperone for EspB and EspD [TTSS (VF0191)] [Escherichia coli O157:H7 str. EDL933]
contig00203 3210 3617 + cesD2 100.0 99.0 NP_290253 (cesD2) chaperone for EspD [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 14838 15191 - cesL 100.0 99.4 NP_290270 (cesL) chaperone for SepL [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 5261 5731 - cesT 100.0 95.5 NP_290260 (cesT) multieffector chaperone [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00101 1448 3394 - chuA 100.0 99.5 NP_756170 (chuA) Outer membrane heme/hemoglobin receptor ChuA [Chu (VF0227)] [Escherichia coli CFT073]
contig00101 371 1399 - chuS 100.0 99.0 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00101 4036 5028 + chuT 100.0 99.8 NP_756175 (chuT) periplasmic heme-binding protein ChuT [Chu (VF0227)] [Escherichia coli CFT073]
contig01045 927 1727 - chuV 100.0 99.8 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00101 5048 6385 + chuW 100.0 98.9 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00101 6398 6892 + chuX 100.0 100.0 NP_756177 (chuX) putative heme-binding protein ChuX [Chu (VF0227)] [Escherichia coli CFT073]
contig00101 6892 7515 + chuY 100.0 98.2 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig03350 48 503 + csgB 99.8 83.6 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig01868 638 1054 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00681 1 690 + csgG 82.7 84.1 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig02263 298 987 - csgG 82.7 83.6 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00066 4487 4660 - draP 100.0 98.8 AAK16479 (draP) DraP [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00005 2672 5201 - eae 89.3 90.5 AAC38392 (eae) intimin [Intimin (VF0177)] [Escherichia coli O127:H6 str. E2348/69]
contig00057 3541 4287 + entA 100.0 96.4 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00057 2684 3541 + entB 100.0 97.9 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00057 1 1050 + entC 88.4 97.0 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00745 153 1340 + entC 100.0 98.7 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00156 310 971 + entD 85.9 96.7 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01895 106 876 - entD 100.0 94.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00057 1060 2670 + entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00037 3361 7214 + entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00957 963 2174 - entS 96.9 96.0 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig01765 55 1266 - entS 96.9 97.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00005 17172 18710 + escC 100.0 99.6 NP_290275 (escC) Type III secretion system secretin EscC [TTSS (VF0191)] [Escherichia coli O157:H7 str. EDL933]
contig00005 751 1971 + escD 100.0 98.7 NP_290258 (escD) Type III secretion system outer MS ring protein EscD [TTSS (VF0191)] [Escherichia coli O157:H7 str. EDL933]
contig00114 6106 6324 + escE 100.0 98.6 NP_290287 (escE) chaperone for EscF [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00203 3653 3874 + escF 100.0 100.0 NP_290252 (escF) Type III secretion system needle filament protein EscF [TTSS (VF0191)] [Escherichia coli O157:H7 str. EDL933]
contig00203 3880 4158 + escG 100.0 97.8 NP_290251 (escG) chaperone for EscF [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 15708 16136 + escI 100.0 99.3 NP_290272 (escI) Type III secretion system inner rod component EscI [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 16139 16711 + escJ 100.0 99.5 NP_290273 (escJ) Type III secretion system inner MS ring protein EscJ [TTSS (VF0191)] [Escherichia coli O157:H7 str. EDL933]
contig00114 7273 7795 + escL 85.0 99.4 NP_290284 (escL) negative regulator EscL stator protein [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 11490 12830 - escN 100.0 99.5 NP_290268 (escN) ATPase EscN [TTSS (VF0191)] [Escherichia coli O157:H7 str. EDL933]
contig00005 11110 11487 - escO 100.0 99.7 NP_290267 (escO) positive regulator EscO [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 10701 10976 - escP 100.0 99.3 NP_290266 (escP) Type III secretion system needle length regulator EscP [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 23129 23782 - escR 100.0 99.8 NP_290283 (escR) Type III secretion systemminor export apparatus protein EscR [TTSS (VF0191)] [Escherichia coli O157:H7 str. EDL933]
contig00005 22860 23129 - escS 100.0 100.0 NP_290282 (escS) Type III secretion systemminor export apparatus protein EscS [TTSS (VF0191)] [Escherichia coli O157:H7 str. EDL933]
contig00005 22084 22860 - escT 100.0 99.6 NP_290281 (escT) Type III secretion system minor export apparatus protein EscT [TTSS (VF0191)] [Escherichia coli O157:H7 str. EDL933]
contig00005 21054 22091 - escU 100.0 99.6 NP_290280 (escU) Type III secretion system export apparatus switch protein EscU [TTSS (VF0191)] [Escherichia coli O157:H7 str. EDL933]
contig00005 12814 14841 - escV 100.0 99.8 NP_290269 (escV) Type III secretion system major export apparatus protein [TTSS (VF0191)] [Escherichia coli O157:H7 str. EDL933]
contig00203 484 1062 + espA 100.0 84.6 NP_290256 (espA) Type III secretion system translocator protein EspA [EspA (VF0198)] [Escherichia coli O157:H7 str. EDL933]
contig00203 2238 3203 + espB 100.0 99.9 AAC38396 (espB) EspB [EspB (VF0179)] [Escherichia coli O127:H6 str. E2348/69]
contig00203 1075 2217 + espD 100.0 99.7 AAC38395 (espD) EspD [EspD (VF0180)] [Escherichia coli O127:H6 str. E2348/69]
contig00203 4243 4863 + espF 100.0 99.7 AAC38400 (espF) EspF [EspF (VF0182)] [Escherichia coli O127:H6 str. E2348/69]
contig00114 3255 4451 - espG 100.0 98.5 NP_290289 (espG) Type III secretion system effector EspG GTPase activating protein [EspG (VF0201)] [Escherichia coli O157:H7 str. EDL933]
contig00071 606 1967 + espK 100.0 92.1 NP_287316 (espK) Type III secretion system effector EspK [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00778 254 2152 + espL1 100.0 96.4 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00071 2344 5157 - espN 100.0 99.9 NP_287312 (espN) Type III secretion system effector EspN [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00388 1875 2929 + espR1 83.7 94.0 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00252 2957 4537 + espX4 99.9 94.1 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00295 1566 2858 - espX5 100.0 96.5 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00071 6337 8286 - espX7/nleL 100.0 99.7 NP_287310 (espX7/nleL) Type III secretion system effector NleL putative E3 ubiquitin ligase [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 20599 21057 + etgA 100.0 99.1 NP_290279 (etgA) T3SS-associated peptidoglycan lytic enzyme [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00957 3 959 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00037 8588 9403 - fepC 100.0 97.4 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00037 10389 11300 - fepD 89.7 95.6 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01231 1 918 + fepD 90.3 97.6 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00037 9400 10392 - fepG 100.0 94.5 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01231 915 1767 + fepG 85.9 98.0 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00037 1941 3143 + fes 100.0 96.5 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00632 1561 2172 - fimA 100.0 88.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig02935 1 538 + fimA 88.8 89.8 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00632 195 920 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig02144 397 930 - fimF 100.0 97.9 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig02871 146 679 - fimF 100.0 96.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00312 109 1020 + fimH 100.0 97.4 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00632 957 1496 - fimI 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00022 9656 10486 - gspC 100.0 96.5 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00022 7566 9416 - gspD 100.0 97.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00022 6073 7566 - gspE 100.0 96.5 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00452 142 1635 + gspE 100.0 95.0 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00022 4874 6073 - gspF 100.0 95.9 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00452 1635 2834 + gspF 100.0 94.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00022 4378 4833 - gspG 100.0 95.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00452 2875 3330 + gspG 100.0 96.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00022 3811 4341 - gspH 100.0 95.5 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00022 3443 3814 - gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00808 1961 2332 - gspI 100.0 92.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00022 2841 3410 - gspJ 100.0 96.7 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00808 1359 1928 - gspJ 100.0 94.4 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00022 1867 2844 - gspK 100.0 97.8 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00808 385 1362 - gspK 100.0 96.6 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00022 692 1552 - gspL 100.0 97.1 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00022 154 576 - gspM 100.0 97.9 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00421 2643 3064 - gspM 99.8 92.9 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00025 5316 7097 - iucA 100.0 99.8 NP_709454 (iucA) aerobactin synthesis protein IucA [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00025 4368 5315 - iucB 100.0 99.8 NP_709455 (iucB) aerobactin synthesis protein IucB [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00025 2626 4368 - iucC 100.0 98.2 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00025 1308 2629 - iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00079 3333 5009 + kpsD 100.0 98.3 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00421 808 1584 - kpsM 100.0 94.7 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00005 7835 8446 - map 100.0 82.3 NP_290262 (map) Type III secretion system effector Map Rho guanine exchange factor [Map (VF0195)] [Escherichia coli O157:H7 str. EDL933]
contig00190 3576 4901 + nleA/espI 100.0 89.5 NP_287961 (nleA/espI) Type III secretion system effector NleA [NleA/EspI (VF0338)] [Escherichia coli O157:H7 str. EDL933]
contig00363 3097 4077 - nleB2 100.0 100.0 NP_286532 (nleB2) Type III secretion system effector NleB2 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00363 920 1489 - nleF 100.0 94.9 NP_287958 (nleF) Type III secretion system effector NleF caspase inhibitor [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00363 1544 2455 - nleH2 99.9 91.6 NP_287959 (nleH2) Type III secretion system effector NleH2 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig01215 745 1058 - papB 99.7 98.4 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig01215 1463 1696 + papI 100.0 94.9 NP_755468 (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig01784 255 806 + papX 100.0 97.6 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00065 6246 7384 + senB 99.9 99.7 YP_406304 (senB) enterotoxin [ShET2 (VF0258)] [Shigella flexneri 2a str. 301]
contig00005 16717 17172 + sepD 100.0 98.7 NP_290274 (sepD) Type III secretion system secretion switch protein SepD [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 9821 10738 - sepQ/escQ 100.0 95.2 NP_290265 (sepQ/escQ) Type III secetion system C ring protein EscQ [TTSS (VF0191)] [Escherichia coli O157:H7 str. EDL933]
contig00005 15376 15675 + sepZ/espZ 100.0 99.7 NP_290271 (sepZ/espZ) Type III secretion system effector EspZ [TTSS (VF0191)] [Escherichia coli O157:H7 str. EDL933]
contig00007 893 1646 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00496 1066 3401 + yagX/ecpC 92.5 98.6 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00496 372 1040 + yagY/ecpB 100.0 98.2 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig03163 54 661 + yagY/ecpB 90.9 97.9 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig01722 1 1287 + ybtE 81.6 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00880 744 2024 - ybtX 100.0 97.5 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00885 744 2024 - ybtX 100.0 99.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00150 6171 6761 + ykgK/ecpR 100.0 97.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID015HW
Contig Start End Strand Gene Coverage Identity Accession Product
contig00061 7875 8619 - afaB-I 100.0 98.2 CAW30798 (afaB-I) chaperone AfaB [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00061 5200 7782 - afaC-I 100.0 99.0 CAW30799 (afaC-I) usher AfaC [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00025 49693 50148 - csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00025 50902 51552 + csgD 100.0 81.3 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00025 51971 52387 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00025 52414 53247 + csgG 100.0 83.1 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00061 9989 10216 + daaF 100.0 100.0 AAA23662 (daaF) DaaF protein [F1845 fimbrial adhesin (AI016)] [Escherichia coli str. C1845]
contig00061 8880 9185 - draA 100.0 100.0 AAK16475 (draA) cytoplamic protein DraA [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00061 4741 5184 - draD 100.0 99.8 AAK16478 (draD) DraD periplasmic protein [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00061 3443 4002 - draE2 99.6 99.6 AAB65153 (draE2) Dr-II structural adhesin precursor [Afa/Dr family (VF0212)] [Escherichia coli EC7372]
contig00061 4189 4362 - draP 100.0 99.4 AAK16479 (draP) DraP [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00012 99201 99947 - entA 100.0 96.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 99947 100804 - entB 100.0 97.5 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 102438 103625 - entC 100.0 97.4 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 118270 119040 + entD 100.0 94.0 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 100818 102428 - entE 100.0 96.0 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 110513 114342 - entF 98.7 95.9 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 104948 106198 - entS 100.0 95.6 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00017 5445 7343 - espL1 100.0 94.8 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00051 24864 25919 + espR1 83.8 94.2 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00008 116391 117812 + espX1 100.0 94.7 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00016 62207 63787 - espX4 99.9 92.9 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00016 31357 32649 + espX5 100.0 95.6 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00013 28661 32886 + fdeC 99.4 91.0 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00012 116005 118245 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 103988 104944 + fepB 100.0 97.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 108299 109114 + fepC 100.0 97.1 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 106297 107313 + fepD 100.0 96.4 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 107310 108302 + fepG 100.0 94.8 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 114560 115762 - fes 100.0 96.8 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00053 25212 25817 - fimA 100.0 92.9 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00054 1111 1713 - fimB 100.0 97.8 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 23846 24571 - fimC 100.0 98.2 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 21143 23779 - fimD 100.0 98.8 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00054 39 633 - fimE 99.7 98.8 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 20603 21136 - fimF 100.0 97.8 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 20087 20590 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 19165 20076 - fimH 100.0 97.5 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 24608 25147 - fimI 100.0 98.5 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00009 97658 98488 - gspC 100.0 95.0 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 95568 97418 - gspD 100.0 97.3 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 94075 95568 - gspE 100.0 96.1 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 92876 94075 - gspF 100.0 96.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 92380 92835 - gspG 100.0 95.6 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 91813 92343 - gspH 100.0 96.0 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 91445 91816 - gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 90843 91412 - gspJ 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 89869 90846 - gspK 100.0 97.8 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 88694 89554 - gspL 100.0 97.0 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 88156 88578 - gspM 100.0 94.1 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 205158 206210 - ompA 100.0 94.0 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00013 18802 19555 - yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00013 19479 21122 - yagW/ecpD 100.0 98.6 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00013 21112 23637 - yagX/ecpC 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00013 23663 24331 - yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00013 24389 24976 - yagZ/ecpA 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00013 25051 25641 - ykgK/ecpR 100.0 97.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID015at48
Contig Start End Strand Gene Coverage Identity Accession Product
contig00071 5613 6357 - afaB-I 100.0 98.2 CAW30798 (afaB-I) chaperone AfaB [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00071 2938 5520 - afaC-I 100.0 99.0 CAW30799 (afaC-I) usher AfaC [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00006 132424 132879 - csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00006 133633 134283 + csgD 100.0 81.3 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00006 134702 135118 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00006 135145 135978 + csgG 100.0 83.1 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00071 7727 7954 + daaF 100.0 100.0 AAA23662 (daaF) DaaF protein [F1845 fimbrial adhesin (AI016)] [Escherichia coli str. C1845]
contig00071 6618 6923 - draA 100.0 100.0 AAK16475 (draA) cytoplamic protein DraA [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00071 2479 2922 - draD 100.0 99.8 AAK16478 (draD) DraD periplasmic protein [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00071 1181 1740 - draE2 99.6 99.6 AAB65153 (draE2) Dr-II structural adhesin precursor [Afa/Dr family (VF0212)] [Escherichia coli EC7372]
contig00071 1927 2100 - draP 100.0 99.4 AAK16479 (draP) DraP [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00040 23172 23918 - entA 100.0 96.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00040 23918 24775 - entB 100.0 97.5 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00040 26409 27596 - entC 100.0 97.4 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00040 42241 43011 + entD 100.0 94.0 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00040 24789 26399 - entE 100.0 96.0 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00040 34484 38313 - entF 98.7 95.9 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00040 28919 30169 - entS 100.0 95.6 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00033 26358 28256 + espL1 100.0 94.8 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00042 14590 15645 - espR1 83.8 94.2 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00025 50896 52317 + espX1 100.0 94.7 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00010 62182 63762 - espX4 99.9 92.9 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00010 31332 32624 + espX5 100.0 95.6 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00016 83053 87278 - fdeC 99.4 91.0 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00040 39976 42216 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00040 27959 28915 + fepB 100.0 97.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00040 32270 33085 + fepC 100.0 97.1 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00040 30268 31284 + fepD 100.0 96.4 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00040 31281 32273 + fepG 100.0 94.8 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00040 38531 39733 - fes 100.0 96.8 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00019 77242 77847 - fimA 100.0 92.9 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00057 25726 26328 + fimB 100.0 97.8 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 75876 76601 - fimC 100.0 98.2 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 73173 75809 - fimD 100.0 98.8 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00057 26806 27400 + fimE 99.7 98.8 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 72633 73166 - fimF 100.0 97.8 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 72117 72620 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 71195 72106 - fimH 100.0 97.5 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 76638 77177 - fimI 100.0 98.5 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00004 136126 136956 - gspC 100.0 95.0 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 134036 135886 - gspD 100.0 97.3 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 132543 134036 - gspE 100.0 96.1 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 131344 132543 - gspF 100.0 96.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 130848 131303 - gspG 100.0 95.6 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 130281 130811 - gspH 100.0 96.0 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 129913 130284 - gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 129311 129880 - gspJ 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 128337 129314 - gspK 100.0 97.8 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 127162 128022 - gspL 100.0 97.0 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 126624 127046 - gspM 100.0 94.1 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 83583 84635 - ompA 100.0 94.0 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00052 22274 23027 - yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00052 22951 24594 - yagW/ecpD 100.0 98.6 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00052 24584 27109 - yagX/ecpC 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00052 27135 27803 - yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00052 27861 28448 - yagZ/ecpA 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00052 28523 29113 - ykgK/ecpR 100.0 97.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID016at24
Contig Start End Strand Gene Coverage Identity Accession Product
contig00033 254 1682 - aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00002 148976 149431 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00002 147569 148219 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00002 146734 147150 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00002 145874 146707 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00045 18008 18754 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00045 18754 19611 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00045 21245 22432 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00045 37076 37846 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00045 19625 21235 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00045 29295 33148 - entF 99.3 95.6 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00045 23755 25005 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00021 15786 17686 + espL1 100.0 97.3 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00011 102778 104964 + espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00047 25267 26320 + espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00008 69187 70608 - espX1 100.0 93.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00011 72982 74562 - espX4 99.9 93.3 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00011 42191 43483 + espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00008 108754 109565 + espY1 99.9 87.0 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00026 59008 63256 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00045 34811 37051 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00045 22795 23751 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00045 27106 27921 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00045 25104 26120 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00045 26117 27109 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00045 33366 34568 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00063 25238 25849 - fimA 100.0 88.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00063 23872 24597 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00063 21169 23805 - fimD 100.0 98.6 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00063 20629 21162 - fimF 100.0 97.9 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00063 20113 20616 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00063 19191 20102 - fimH 100.0 97.4 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00063 24634 25173 - fimI 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00031 31681 33702 + fyuA 100.0 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00031 18581 28072 + irp1 100.0 99.7 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00031 12386 18493 + irp2 100.0 99.5 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00002 65175 66215 - ompA 100.0 98.0 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00036 8091 8844 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00036 6524 8167 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00036 4009 6534 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00036 3315 3983 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00036 2670 3257 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00031 11236 12195 + ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00031 29973 31550 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00031 9267 11069 - ybtP 100.0 99.7 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00031 7478 9280 - ybtQ 100.0 99.7 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00031 4873 6177 - ybtS 100.0 99.6 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00031 29166 29969 + ybtT 100.0 99.9 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00031 28069 29169 + ybtU 100.0 100.0 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00031 6205 7485 - ybtX 100.0 99.5 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00036 2005 2595 + ykgK/ecpR 100.0 96.8 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID017at48
Contig Start End Strand Gene Coverage Identity Accession Product
contig00013 34713 36141 + aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00030 6293 6748 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00030 4886 5536 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00030 4051 4467 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00030 3191 4024 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00041 19920 20666 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00041 20666 21523 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00041 23157 24344 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00041 38988 39758 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00041 21537 23147 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00041 31207 35060 - entF 99.3 95.6 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00041 25667 26917 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00022 23929 25829 + espL1 100.0 97.3 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00075 14097 16283 + espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00057 25069 26122 + espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00015 50505 51926 - espX1 100.0 93.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00055 13970 15550 + espX4 99.9 93.3 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00024 40679 41971 + espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00045 17064 17875 - espY1 99.9 87.0 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00010 33538 37786 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00041 36723 38963 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00041 24707 25663 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00041 29018 29833 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00041 27016 28032 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00041 28029 29021 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00041 35278 36480 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00069 25027 25638 - fimA 100.0 88.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00069 23661 24386 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00069 20958 23594 - fimD 100.0 98.6 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00069 20418 20951 - fimF 100.0 97.9 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00069 19902 20405 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00069 18980 19891 - fimH 100.0 97.4 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00069 24423 24962 - fimI 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00025 30503 32524 + fyuA 100.0 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00025 17403 26894 + irp1 100.0 99.7 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00025 11208 17315 + irp2 100.0 99.5 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00007 14845 15885 - ompA 100.0 98.0 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00010 46897 47650 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00010 45330 46973 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00010 42815 45340 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00010 42121 42789 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00010 41476 42063 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00025 10058 11017 + ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00025 28795 30372 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00025 8089 9891 - ybtP 100.0 99.7 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00025 6300 8102 - ybtQ 100.0 99.7 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00025 3695 4999 - ybtS 100.0 99.6 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00025 27988 28791 + ybtT 100.0 99.9 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00025 26891 27991 + ybtU 100.0 100.0 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00025 5027 6307 - ybtX 100.0 99.5 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00010 40811 41401 + ykgK/ecpR 100.0 96.8 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID018at24
Contig Start End Strand Gene Coverage Identity Accession Product
contig00016 74847 76275 + aslA 100.0 98.5 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00005 177711 179657 - chuA 100.0 99.7 NP_756170 (chuA) Outer membrane heme/hemoglobin receptor ChuA [Chu (VF0227)] [Escherichia coli CFT073]
contig00005 176634 177662 - chuS 100.0 99.5 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00005 180299 181291 + chuT 100.0 99.7 NP_756175 (chuT) periplasmic heme-binding protein ChuT [Chu (VF0227)] [Escherichia coli CFT073]
contig00005 183827 184819 + chuU 100.0 99.5 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00005 184786 185586 + chuV 100.0 99.6 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00005 181311 182648 + chuW 100.0 99.1 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00005 182661 183155 + chuX 100.0 100.0 NP_756177 (chuX) putative heme-binding protein ChuX [Chu (VF0227)] [Escherichia coli CFT073]
contig00005 183155 183778 + chuY 100.0 98.4 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00011 80832 81287 - csgB 99.8 83.6 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00011 82040 82690 + csgD 100.0 81.3 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00011 83109 83525 + csgF 99.0 80.8 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00011 83552 84385 + csgG 100.0 83.3 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00037 31204 31950 - entA 100.0 98.4 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00037 31950 32807 - entB 100.0 99.2 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00037 34441 35628 - entC 100.0 99.7 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00041 4966 5627 + entD 85.9 92.8 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00037 32821 34431 - entE 100.0 99.1 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00037 36765 38015 - entS 100.0 98.8 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00050 22805 26613 - fdeC 89.6 99.6 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00041 2701 4941 + fepA 100.0 98.9 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00037 35805 36761 + fepB 100.0 99.8 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00037 40116 40931 + fepC 100.0 99.4 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00037 38114 39130 + fepD 100.0 99.5 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00037 39127 40119 + fepG 100.0 99.8 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00041 1256 2458 - fes 100.0 99.8 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00013 126236 126841 - fimA 100.0 92.2 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00033 1122 1724 - fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00013 124870 125595 - fimC 100.0 98.5 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00013 122167 124803 - fimD 100.0 98.3 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00033 48 644 - fimE 100.0 98.7 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00013 121627 122160 - fimF 100.0 97.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00013 121111 121614 - fimG 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00013 120189 121100 - fimH 100.0 97.2 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00013 125632 126171 - fimI 100.0 98.3 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00018 86035 88056 - fyuA 100.0 100.0 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00004 170339 171169 + gspC 100.0 93.9 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 171409 173259 + gspD 100.0 96.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 173259 174752 + gspE 100.0 94.9 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 174752 175951 + gspF 100.0 94.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 175992 176447 + gspG 100.0 96.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 176484 177014 + gspH 100.0 94.7 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 177011 177382 + gspI 100.0 92.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 177415 177984 + gspJ 100.0 94.4 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 177981 178958 + gspK 100.0 96.6 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 179273 180133 + gspL 100.0 94.8 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 180249 180670 + gspM 99.8 93.6 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00021 3195 12686 - irp1 100.0 99.3 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00021 12776 18880 - irp2 100.0 98.9 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00053 10165 11946 + iucA 100.0 99.8 NP_709454 (iucA) aerobactin synthesis protein IucA [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00053 11947 12894 + iucB 100.0 99.8 NP_709455 (iucB) aerobactin synthesis protein IucB [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00053 12894 14636 + iucC 100.0 98.2 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00053 14633 15954 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00053 15892 18193 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00004 193824 195500 - kpsD 100.0 99.0 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00004 181730 182506 + kpsM 100.0 99.9 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00004 182503 183162 + kpsT 100.0 100.0 AAA24047 (kpsT) KpsT [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00008 140930 141970 - ompA 100.0 99.5 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00053 747 1060 - papB 99.7 98.4 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00053 1465 1698 + papI 100.0 94.9 NP_755468 (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00098 256 807 + papX 100.0 97.5 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00082 151 4051 + sat 100.0 99.5 NP_755494 (sat) Aecreted auto transpoter toxin [Sat (VF0231)] [Escherichia coli CFT073]
contig00067 8438 9576 + senB 99.9 99.7 YP_406304 (senB) enterotoxin [ShET2 (VF0258)] [Shigella flexneri 2a str. 301]
contig00038 20107 24238 + vat 100.0 99.7 NP_752330 (vat) Haemoglobin protease [Tsh (VF0233)] [Escherichia coli CFT073]
contig00038 15737 16490 + yagV/ecpE 99.7 98.4 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00038 14170 15813 + yagW/ecpD 100.0 99.2 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00038 11655 14180 + yagX/ecpC 100.0 97.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00038 10961 11629 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00038 10317 10904 + yagZ/ecpA 100.0 98.5 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00021 19071 20030 - ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00021 1 1294 - ybtE 82.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00021 20197 21999 + ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00021 21986 23788 + ybtQ 100.0 99.8 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00021 25089 26393 + ybtS 100.0 99.8 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00021 1298 2101 - ybtT 100.0 99.5 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00021 2098 3198 - ybtU 100.0 99.7 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00021 23781 25061 + ybtX 100.0 99.6 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00038 9652 10242 + ykgK/ecpR 100.0 99.3 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID020at24
Contig Start End Strand Gene Coverage Identity Accession Product
contig00030 15483 16911 + aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00019 7466 7921 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00019 6061 6711 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00019 5226 5642 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00019 4366 5199 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00032 26547 27293 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00032 27293 28150 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00032 29784 30971 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00032 45615 46385 + entD 100.0 95.1 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00032 28164 29774 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00032 37834 41687 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00032 32294 33544 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00009 15959 17858 - espL1 100.0 97.6 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00012 91954 94140 + espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00060 15211 16264 - espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00002 190820 191954 - espR4 99.5 84.3 NP_288396 (espR4) Type III secretion system effector espR4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 144042 145463 + espX1 100.0 93.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00012 62158 63738 - espX4 99.9 93.3 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00012 31367 32659 + espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 105100 105896 - espY1 99.9 88.7 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00040 4769 9017 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00032 43350 45590 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00032 31334 32290 + fepB 100.0 97.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00032 35645 36460 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00032 33643 34659 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00032 34656 35648 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00032 41905 43107 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00014 53037 53648 - fimA 100.0 88.4 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00014 55146 55748 - fimB 100.0 98.0 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00014 51671 52396 - fimC 100.0 98.6 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00014 48968 51604 - fimD 100.0 98.5 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00014 54075 54669 - fimE 99.7 99.3 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00014 48428 48961 - fimF 100.0 97.8 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00014 47912 48415 - fimG 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00014 46990 47901 - fimH 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00014 52433 52972 - fimI 100.0 98.9 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00007 134529 135359 - gspC 100.0 94.7 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 132439 134289 - gspD 100.0 96.0 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 130946 132439 - gspE 100.0 96.9 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 129747 130946 - gspF 100.0 96.0 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 129251 129706 - gspG 100.0 95.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 128684 129214 - gspH 100.0 95.5 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 128316 128687 - gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 127714 128283 - gspJ 100.0 96.7 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 126740 127717 - gspK 100.0 97.0 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 125565 126425 - gspL 100.0 97.1 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 125027 125449 - gspM 100.0 98.3 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 237168 238208 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00040 18126 18879 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00040 16559 18202 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00040 14044 16569 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00040 13350 14018 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00040 12705 13292 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00040 12040 12630 + ykgK/ecpR 100.0 97.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID021at24
Contig Start End Strand Gene Coverage Identity Accession Product
contig00029 16207 17635 + aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00004 135844 136299 - csgB 99.8 83.6 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00004 137054 137704 + csgD 100.0 81.3 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00004 138123 138539 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00004 138566 139399 + csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00071 19198 19944 + entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00071 18341 19198 + entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00071 15520 16707 + entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00071 106 876 - entD 100.0 94.3 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00071 16717 18327 + entE 100.0 95.4 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00071 4804 8657 + entF 99.3 95.6 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00071 12947 14197 + entS 100.0 95.5 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00014 1 1859 + espL1 97.8 97.6 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00020 17395 18975 - espX4 99.9 94.1 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00055 19768 21060 + espX5 100.0 96.6 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00071 901 3141 - fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00071 14201 15157 - fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00071 10031 10846 - fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00071 11832 12848 - fepD 100.0 96.2 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00071 10843 11835 - fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00071 3384 4586 + fes 100.0 96.6 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00061 25661 28297 - fimD 100.0 98.3 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00061 25121 25654 - fimF 100.0 97.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00061 24605 25108 - fimG 100.0 98.2 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00061 23683 24594 - fimH 100.0 97.2 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00056 29400 31421 + fyuA 100.0 99.6 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00056 16300 25791 + irp1 100.0 99.7 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00056 10105 16212 + irp2 100.0 99.6 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00011 29720 30772 + ompA 100.0 95.6 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00097 3621 4559 - pla 100.0 98.3 NP_395233 (pla) plasminogen activator protease precursor [Pla (VF0139)] [Yersinia pestis CO92]
contig00056 8955 9914 + ybtA 100.0 99.3 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00056 27692 29269 + ybtE 100.0 99.9 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00056 6986 8788 - ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00056 5197 6999 - ybtQ 100.0 99.6 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00056 2592 3896 - ybtS 100.0 99.5 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00056 26885 27688 + ybtT 100.0 99.6 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00056 25788 26888 + ybtU 100.0 99.9 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00056 3924 5204 - ybtX 100.0 99.6 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
ID025III
Contig Start End Strand Gene Coverage Identity Accession Product
contig00816 681 1331 + csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig02160 275 691 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig01530 11 757 + entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00746 403 1499 - entS 87.7 95.1 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00565 1 1436 + espX4 90.8 93.7 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00071 1520 2245 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00201 1174 1707 - fimF 100.0 97.9 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00201 658 1161 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00071 2282 2821 - fimI 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00782 36 1340 - ybtS 100.0 99.6 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00091 411 1214 - ybtT 100.0 99.9 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00091 1211 2311 - ybtU 100.0 100.0 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
ID025II
Contig Start End Strand Gene Coverage Identity Accession Product
contig00018 49173 50601 + aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00038 6313 6768 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00038 4906 5556 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00038 4071 4487 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00038 3211 4044 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00049 18008 18754 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00049 18754 19611 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00049 21245 22432 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00049 37076 37846 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00049 19625 21235 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00049 29295 33148 - entF 99.3 95.6 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00049 23755 25005 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00037 1 1621 + espL1 85.3 97.3 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00025 63986 66172 + espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00052 24678 25731 + espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00035 46284 47705 + espX1 100.0 93.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00025 34190 35770 - espX4 99.9 93.3 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00025 3399 4691 + espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00035 7327 8138 - espY1 99.9 87.0 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00022 33602 37850 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00049 34811 37051 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00049 22795 23751 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00049 27106 27921 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00049 25104 26120 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00049 26117 27109 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00049 33366 34568 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00061 25238 25849 - fimA 100.0 88.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00061 23872 24597 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00061 21169 23805 - fimD 100.0 98.6 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00061 20629 21162 - fimF 100.0 97.9 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00061 20113 20616 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00061 19191 20102 - fimH 100.0 97.4 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00061 24634 25173 - fimI 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00036 30503 32524 + fyuA 100.0 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00036 17403 26894 + irp1 100.0 99.7 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00036 11208 17315 + irp2 100.0 99.5 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00002 103766 104806 - ompA 100.0 98.0 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00022 46961 47714 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00022 45394 47037 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00022 42879 45404 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00022 42185 42853 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00022 41540 42127 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00036 10058 11017 + ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00036 28795 30372 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00036 8089 9891 - ybtP 100.0 99.7 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00036 6300 8102 - ybtQ 100.0 99.7 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00036 3695 4999 - ybtS 100.0 99.6 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00036 27988 28791 + ybtT 100.0 99.9 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00036 26891 27991 + ybtU 100.0 100.0 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00036 5027 6307 - ybtX 100.0 99.5 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00022 40875 41465 + ykgK/ecpR 100.0 96.8 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID025I
Contig Start End Strand Gene Coverage Identity Accession Product
contig00026 24374 25802 - aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00001 301680 302135 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00001 300273 300923 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00001 299438 299854 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00001 298578 299411 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00052 8404 9150 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00052 9150 10007 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00052 11641 12828 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00052 27472 28242 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00052 10021 11631 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00052 19691 23544 - entF 99.3 95.6 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00052 14151 15401 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00024 23931 25831 + espL1 100.0 97.3 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00013 102815 105001 + espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00042 25267 26320 + espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00004 50505 51926 - espX1 100.0 93.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00013 73019 74599 - espX4 99.9 93.3 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00013 42228 43520 + espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00004 90072 90883 + espY1 99.9 87.0 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00014 58848 63096 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00052 25207 27447 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00052 13191 14147 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00052 17502 18317 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00052 15500 16516 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00052 16513 17505 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00052 23762 24964 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00053 25238 25849 - fimA 100.0 88.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 23872 24597 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 21169 23805 - fimD 100.0 98.6 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 20629 21162 - fimF 100.0 97.9 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 20113 20616 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 19191 20102 - fimH 100.0 97.4 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 24634 25173 - fimI 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00035 30503 32524 + fyuA 100.0 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00035 17403 26894 + irp1 100.0 99.7 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00035 11208 17315 + irp2 100.0 99.5 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 217879 218919 - ompA 100.0 98.0 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00014 72207 72960 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00014 70640 72283 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00014 68125 70650 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00014 67431 68099 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00014 66786 67373 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00035 10058 11017 + ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00035 28795 30372 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00035 8089 9891 - ybtP 100.0 99.7 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00035 6300 8102 - ybtQ 100.0 99.7 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00035 3695 4999 - ybtS 100.0 99.6 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00035 27988 28791 + ybtT 100.0 99.9 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00035 26891 27991 + ybtU 100.0 100.0 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00035 5027 6307 - ybtX 100.0 99.5 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00014 66121 66711 + ykgK/ecpR 100.0 96.8 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID026
Contig Start End Strand Gene Coverage Identity Accession Product
contig00021 49173 50601 + aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00035 9327 9782 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00035 7920 8570 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00035 7085 7501 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00035 6225 7058 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00044 18008 18754 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 18754 19611 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 21245 22432 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 37076 37846 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 19625 21235 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 29295 33148 - entF 99.3 95.6 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 23755 25005 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00024 23931 25831 + espL1 100.0 97.3 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00016 91986 94172 + espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00045 25267 26320 + espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00013 69187 70608 - espX1 100.0 93.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00016 62190 63770 - espX4 99.9 93.3 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00016 31399 32691 + espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00013 108754 109565 + espY1 99.9 87.0 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00002 204827 209075 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00044 34811 37051 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 22795 23751 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 27106 27921 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 25104 26120 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 26117 27109 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 33366 34568 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00055 25238 25849 - fimA 100.0 88.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00055 23872 24597 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00055 21169 23805 - fimD 100.0 98.6 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00055 20629 21162 - fimF 100.0 97.9 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00055 20113 20616 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00055 19191 20102 - fimH 100.0 97.4 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00055 24634 25173 - fimI 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00033 30503 32524 + fyuA 100.0 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00033 17403 26894 + irp1 100.0 99.7 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00033 11208 17315 + irp2 100.0 99.5 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 219469 220509 - ompA 100.0 98.0 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00002 218186 218939 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00002 216619 218262 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00002 214104 216629 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00002 213410 214078 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00002 212765 213352 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00033 10058 11017 + ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00033 28795 30372 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00033 8089 9891 - ybtP 100.0 99.7 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00033 6300 8102 - ybtQ 100.0 99.7 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00033 3695 4999 - ybtS 100.0 99.6 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00033 27988 28791 + ybtT 100.0 99.9 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00033 26891 27991 + ybtU 100.0 100.0 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00033 5027 6307 - ybtX 100.0 99.5 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00002 212100 212690 + ykgK/ecpR 100.0 96.8 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID027
Contig Start End Strand Gene Coverage Identity Accession Product
contig00023 49173 50601 + aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00035 6471 6926 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00035 5064 5714 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00035 4229 4645 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00035 3369 4202 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00044 18008 18754 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 18754 19611 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 21245 22432 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 37076 37846 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 19625 21235 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 29295 33148 - entF 99.3 95.6 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 23755 25005 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00026 23930 25830 + espL1 100.0 97.3 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 7562 9748 - espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00045 25726 26779 + espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00012 69187 70608 - espX1 100.0 93.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 37964 39544 + espX4 99.9 93.3 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 69043 70335 - espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00012 108754 109565 + espY1 99.9 87.0 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00025 33539 37787 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00044 34811 37051 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 22795 23751 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 27106 27921 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 25104 26120 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 26117 27109 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 33366 34568 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00058 25238 25849 - fimA 100.0 88.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00058 23872 24597 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00058 21169 23805 - fimD 100.0 98.6 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00058 20629 21162 - fimF 100.0 97.9 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00058 20113 20616 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00058 19191 20102 - fimH 100.0 97.4 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00058 24634 25173 - fimI 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00054 20731 22752 - fyuA 100.0 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00060 11208 17315 + irp2 100.0 99.5 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 177939 178979 - ompA 100.0 98.0 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00025 46898 47651 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00025 45331 46974 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00025 42816 45341 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00025 42122 42790 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00025 41477 42064 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00060 10058 11017 + ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00054 22883 24460 - ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00060 8089 9891 - ybtP 100.0 99.7 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00060 6300 8102 - ybtQ 100.0 99.7 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00060 3695 4999 - ybtS 100.0 99.6 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00054 24464 25267 - ybtT 100.0 99.9 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00054 25264 26364 - ybtU 100.0 100.0 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00060 5027 6307 - ybtX 100.0 99.5 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00025 40812 41402 + ykgK/ecpR 100.0 96.8 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID031
Contig Start End Strand Gene Coverage Identity Accession Product
contig00018 75528 76955 + aslA 99.9 98.0 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00009 179716 181662 - chuA 100.0 99.8 NP_756170 (chuA) Outer membrane heme/hemoglobin receptor ChuA [Chu (VF0227)] [Escherichia coli CFT073]
contig00009 178639 179667 - chuS 100.0 99.5 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00009 182330 183322 + chuT 100.0 99.5 NP_756175 (chuT) periplasmic heme-binding protein ChuT [Chu (VF0227)] [Escherichia coli CFT073]
contig00009 185858 186850 + chuU 100.0 99.6 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00009 186817 187617 + chuV 100.0 99.6 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00009 183342 184679 + chuW 100.0 99.1 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00009 184692 185186 + chuX 100.0 100.0 NP_756177 (chuX) putative heme-binding protein ChuX [Chu (VF0227)] [Escherichia coli CFT073]
contig00009 185186 185809 + chuY 100.0 99.5 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00042 7651 10695 + cnf1 100.0 99.6 CAA50007 (cnf1) cytotoxic necrotizing factor 1 [CNF-1 (VF0240)] [Escherichia coli str. E-B35]
contig00021 88421 88876 - csgB 99.8 83.6 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00021 89630 90280 + csgD 100.0 81.4 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00021 90699 91115 + csgF 99.0 81.7 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00021 91142 91975 + csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00016 97918 98664 - entA 100.0 98.5 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 98664 99521 - entB 100.0 99.3 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 101155 102342 - entC 100.0 99.8 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 116808 117578 + entD 100.0 97.0 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 99535 101145 - entE 100.0 99.2 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 109019 112872 - entF 99.3 98.2 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 103479 104729 - entS 100.0 96.3 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00004 151801 156051 + fdeC 100.0 99.9 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00016 114534 116783 + fepA 100.0 98.1 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 102519 103475 + fepB 100.0 99.6 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 106830 107645 + fepC 100.0 100.0 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 104828 105844 + fepD 100.0 98.5 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 105841 106833 + fepG 100.0 99.2 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 113090 114292 - fes 100.0 99.2 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00002 14738 15343 + fimA 100.0 97.5 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 12638 13240 + fimB 100.0 100.0 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 15984 16709 + fimC 100.0 99.2 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 16775 19411 + fimD 100.0 99.0 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 13718 14314 + fimE 100.0 99.8 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 19418 19951 + fimF 100.0 99.1 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 19964 20467 + fimG 100.0 98.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 20478 21389 + fimH 100.0 99.6 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 15408 15947 + fimI 100.0 99.4 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00028 45687 46382 - focC 100.0 99.6 NP_753155 (focC) F1C periplasmic chaperone [F1C fimbriae (VF0224)] [Escherichia coli CFT073]
contig00028 42987 45665 - focD 100.0 99.8 NP_753156 (focD) F1C fimbrial usher [F1C fimbriae (VF0224)] [Escherichia coli CFT073]
contig00028 41922 42425 - focG 100.0 100.0 NP_753158 (focG) F1C minor fimbrial subunit protein G presursor [F1C fimbriae (VF0224)] [Escherichia coli CFT073]
contig00028 40961 41971 - focH 100.0 99.0 NP_753159 (focH) F1C Putative fimbrial adhesin precursor [F1C fimbriae (VF0224)] [Escherichia coli CFT073]
contig00011 29434 31455 - fyuA 100.0 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00003 122250 123080 - gspC 100.0 94.0 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 120160 122010 - gspD 100.0 94.4 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 118667 120160 - gspE 100.0 93.4 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 117468 118667 - gspF 100.0 93.6 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 116972 117427 - gspG 100.0 96.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 116405 116935 - gspH 100.0 92.8 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 116037 116408 - gspI 100.0 93.3 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 115435 116004 - gspJ 100.0 94.4 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 114461 115438 - gspK 100.0 96.1 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 113286 114146 - gspL 100.0 94.9 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 112749 113170 - gspM 99.8 93.1 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00042 1 3054 + hlyA 99.3 99.2 NP_755445 (hlyA) Hemolysin A [Hemolysin (VF0225)] [Escherichia coli CFT073]
contig00042 3125 5248 + hlyB 100.0 99.5 NP_755448 (hlyB) Hemolysin B [Hemolysin (VF0225)] [Escherichia coli CFT073]
contig00025 72150 72823 + hlyC 99.8 99.0 NP_755444 (hlyC) Hemolysin C [Hemolysin (VF0225)] [Escherichia coli CFT073]
contig00042 5267 6703 + hlyD 100.0 98.3 NP_755449 (hlyD) Hemolysin D [Hemolysin (VF0225)] [Escherichia coli CFT073]
contig00002 44055 45425 + ibeA 99.9 98.6 AAF98391 (ibeA) invasion protein IbeA [Ibes (VF0237)] [Escherichia coli O18:K1:H7 str. RS218]
contig00041 1787 2949 + iroB 99.9 98.4 NP_753168 (iroB) glucosyltransferase IroB [Salmochelin (IA013)] [Escherichia coli CFT073]
contig00041 3012 6749 + iroC 100.0 99.2 NP_753167 (iroC) ATP binding cassette transporter [Salmochelin (IA013)] [Escherichia coli CFT073]
contig00041 6853 8082 + iroD 100.0 98.9 NP_753166 (iroD) esterase [Salmochelin (IA013)] [Escherichia coli CFT073]
contig00041 8167 9123 + iroE 100.0 99.5 NP_753165 (iroE) esterase [Salmochelin (IA013)] [Escherichia coli CFT073]
contig00041 9168 11345 - iroN 100.0 99.1 NP_753164 (iroN) salmochelin receptor IroN [IroN (VF0230)] [Escherichia coli CFT073]
contig00011 35064 44555 - irp1 100.0 99.8 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00011 44643 50750 - irp2 100.0 98.5 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00003 97919 99595 + kpsD 100.0 99.5 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00003 110913 111689 - kpsM 100.0 99.9 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00003 110257 110916 - kpsT 100.0 100.0 AAA24047 (kpsT) KpsT [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00006 175322 176362 - ompA 100.0 99.5 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00003 10572 14081 - pic 85.2 95.6 YP_006098864 (pic) Pic serine protease precursor autotransporter [Pic (VF0218)] [Escherichia coli O44:H18 042]
contig00028 47956 48285 - sfaB 100.0 99.4 YP_540123 (sfaB) S fimbrial switch regulatory protein SfaB [S fimbriae (VF0222)] [Escherichia coli UTI89]
contig00028 48641 48925 + sfaC 100.0 96.8 YP_540122 (sfaC) S fimbrial switch regulatory protein SfaC [S fimbriae (VF0222)] [Escherichia coli UTI89]
contig00028 46423 46971 - sfaD 100.0 98.9 YP_540125 (sfaD) S fimbriae minor subunit SfaD [S fimbriae (VF0222)] [Escherichia coli UTI89]
contig00028 42447 42974 - sfaG 100.0 100.0 YP_540128 (sfaG) S fimbriae minor subunit SfaG [S fimbriae (VF0222)] [Escherichia coli UTI89]
contig00028 39219 39770 - sfaX 100.0 98.2 YP_540132 (sfaX) regulatory protein SfaX [S fimbriae (VF0222)] [Escherichia coli UTI89]
contig00028 39917 40657 - sfaY 100.0 98.5 YP_540131 (sfaY) regulatory protein SfaY [S fimbriae (VF0222)] [Escherichia coli UTI89]
contig00011 74193 75116 - tcpC 100.0 100.0 NP_754290 (tcpC) Tir domain containing protein TcpC [TcpC (VF0413)] [Escherichia coli CFT073]
contig00004 127965 132095 - vat 100.0 100.0 NP_752330 (vat) Haemoglobin protease [Tsh (VF0233)] [Escherichia coli CFT073]
contig00004 135712 136465 - yagV/ecpE 99.7 98.4 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00004 136389 138032 - yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00004 138022 140547 - yagX/ecpC 100.0 97.6 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00004 140573 141241 - yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00004 141298 141885 - yagZ/ecpA 100.0 98.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00011 50941 51900 - ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00011 31586 33163 - ybtE 100.0 99.9 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00011 52067 53869 + ybtP 100.0 99.8 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00011 53856 55658 + ybtQ 100.0 99.7 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00011 56959 58263 + ybtS 100.0 99.8 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00011 33167 33970 - ybtT 100.0 99.8 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00011 33967 35067 - ybtU 100.0 99.9 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00011 55651 56931 + ybtX 100.0 99.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00004 141959 142549 - ykgK/ecpR 100.0 99.3 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID032I
Contig Start End Strand Gene Coverage Identity Accession Product
contig00032 55910 56215 - afaA 100.0 100.0 CAW30797 (afaA) fimbrial major subunit AfaA [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00032 54868 55612 - afaB-I 100.0 99.6 CAW30798 (afaB-I) chaperone AfaB [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00032 52193 54775 - afaC-I 100.0 99.9 CAW30799 (afaC-I) usher AfaC [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00032 51734 52177 - afaD 100.0 100.0 CAW30800 (afaD) AfaD [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00032 50496 50981 - afaE-I 100.0 99.8 CAW30801 (afaE-I) AFA-I adhesin [Afa/Dr family (VF0212)] [Escherichia coli O25b:H4 str. FV9863]
contig00022 71077 72505 + aslA 100.0 98.2 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00008 172126 174072 - chuA 100.0 99.5 NP_756170 (chuA) Outer membrane heme/hemoglobin receptor ChuA [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 171049 172077 - chuS 100.0 99.0 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 174714 175706 + chuT 100.0 99.8 NP_756175 (chuT) periplasmic heme-binding protein ChuT [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 178242 179234 + chuU 100.0 99.5 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 179201 180001 + chuV 100.0 99.8 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 175726 177063 + chuW 100.0 98.9 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 177076 177570 + chuX 100.0 100.0 NP_756177 (chuX) putative heme-binding protein ChuX [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 177570 178193 + chuY 100.0 98.2 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00011 103007 103462 - csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00011 104215 104865 + csgD 100.0 81.6 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00011 105284 105700 + csgF 99.0 80.8 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00011 105727 106560 + csgG 100.0 83.2 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00032 57133 57360 + daaF 100.0 100.0 AAA23662 (daaF) DaaF protein [F1845 fimbrial adhesin (AI016)] [Escherichia coli str. C1845]
contig00032 51183 51356 - draP 100.0 98.8 AAK16479 (draP) DraP [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00006 150253 150999 - entA 100.0 98.1 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 150999 151856 - entB 100.0 99.4 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 153490 154677 - entC 100.0 98.7 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 169166 169827 + entD 85.9 96.7 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 151870 153480 - entE 100.0 98.9 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 161357 165238 - entF 100.0 98.2 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 155814 157064 - entS 100.0 97.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00001 228836 233083 - fdeC 99.9 97.4 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00006 166901 169141 + fepA 100.0 98.9 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 154854 155810 + fepB 100.0 98.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 159165 159980 + fepC 100.0 99.1 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 157163 158179 + fepD 100.0 97.8 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 158176 159168 + fepG 100.0 97.9 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 165456 166658 - fes 100.0 99.0 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00031 63484 64088 - fimA 99.8 90.8 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00031 62118 62843 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00031 59415 62051 - fimD 100.0 98.5 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00054 8989 9585 + fimE 100.0 98.8 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00031 58875 59408 - fimF 100.0 96.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00031 58359 58862 - fimG 100.0 98.2 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00031 57437 58348 - fimH 100.0 97.5 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00031 62880 63419 - fimI 100.0 98.5 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00024 51772 53793 - fyuA 100.0 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00007 167409 168239 + gspC 100.0 93.9 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 168479 170329 + gspD 100.0 96.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 170329 171822 + gspE 100.0 95.0 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 171822 173021 + gspF 100.0 94.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 173062 173517 + gspG 100.0 96.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 173554 174084 + gspH 100.0 94.7 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 174081 174452 + gspI 100.0 92.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 174485 175054 + gspJ 100.0 94.4 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 175051 176028 + gspK 100.0 96.6 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 176343 177203 + gspL 100.0 94.8 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 177319 177740 + gspM 99.8 92.9 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00024 57402 66893 - irp1 100.0 99.8 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00024 66981 73088 - irp2 100.0 99.4 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00039 9495 11276 + iucA 100.0 99.8 NP_709454 (iucA) aerobactin synthesis protein IucA [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00039 11277 12224 + iucB 100.0 99.8 NP_709455 (iucB) aerobactin synthesis protein IucB [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00039 12224 13966 + iucC 100.0 98.2 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00039 13963 15284 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00039 15222 17523 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00007 192461 194137 - kpsD 100.0 98.3 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00007 178799 179575 + kpsM 100.0 94.7 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00035 37571 38623 - ompA 100.0 95.8 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00039 1409 1722 - papB 99.7 98.4 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00039 2127 2360 + papI 100.0 94.9 NP_755468 (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00080 256 807 + papX 100.0 97.6 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00039 18455 22354 + sat 100.0 99.6 NP_755494 (sat) Aecreted auto transpoter toxin [Sat (VF0231)] [Escherichia coli CFT073]
contig00001 248421 249174 + yagV/ecpE 99.7 98.0 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 246854 248497 + yagW/ecpD 100.0 99.2 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 244339 246864 + yagX/ecpC 100.0 97.6 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 243645 244313 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 243001 243588 + yagZ/ecpA 100.0 98.5 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00024 73279 74238 - ybtA 100.0 99.3 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00024 53924 55501 - ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00024 74405 76207 + ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00024 76194 77996 + ybtQ 100.0 99.6 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00024 79297 80601 + ybtS 100.0 99.8 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00024 55505 56308 - ybtT 100.0 99.6 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00024 56305 57405 - ybtU 100.0 99.7 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00024 77989 79269 + ybtX 100.0 99.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 242336 242926 + ykgK/ecpR 100.0 99.5 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID033I
Contig Start End Strand Gene Coverage Identity Accession Product
contig00032 16542 17970 + aslA 100.0 92.9 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00049 35888 36343 - csgB 99.8 83.4 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00006 127197 127847 - csgD 100.0 81.3 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00006 126362 126778 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00006 125502 126335 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00038 27334 28080 - entA 100.0 96.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00038 28080 28937 - entB 100.0 98.4 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00038 30571 31758 - entC 100.0 98.3 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00038 46402 47172 + entD 100.0 95.1 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00038 28951 30561 - entE 100.0 95.8 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00038 38621 42474 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00038 33081 34331 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00001 78504 80404 - espL1 100.0 97.4 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00046 14116 15170 - espR1 83.7 93.9 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00022 64048 65468 + espX1 99.9 95.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00010 37035 38615 + espX4 99.9 94.0 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00010 68120 69412 - espX5 100.0 97.0 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00022 24999 25780 - espY1 99.9 90.4 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00081 2689 6937 + fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00038 44137 46377 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00038 32121 33077 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00038 36432 37247 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00038 34430 35446 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00038 35443 36435 + fepG 100.0 94.0 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00038 42692 43894 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00051 2396 3007 - fimA 100.0 88.1 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00051 4504 5106 - fimB 100.0 97.0 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00051 1030 1755 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00051 3430 4026 - fimE 100.0 99.5 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00056 28791 29324 - fimF 100.0 99.1 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00056 28275 28778 - fimG 100.0 98.2 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00056 27353 28264 - fimH 100.0 97.4 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00051 1792 2331 - fimI 100.0 99.3 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00006 54589 55629 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00035 6157 6910 + yagV/ecpE 99.7 97.0 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00035 4590 6233 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00035 2076 4600 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00035 1382 2050 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00035 737 1324 + yagZ/ecpA 100.0 99.0 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00035 72 662 + ykgK/ecpR 100.0 96.8 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID034II
Contig Start End Strand Gene Coverage Identity Accession Product
contig00022 49173 50601 + aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00034 8088 8543 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00034 6681 7331 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00034 5846 6262 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00034 4986 5819 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00040 18008 18754 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00040 18754 19611 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00040 21245 22432 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00040 37076 37846 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00040 19625 21235 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00040 29295 33148 - entF 99.3 95.6 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00040 23755 25005 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00027 14871 16771 + espL1 100.0 97.3 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00007 7232 9418 - espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00041 25267 26320 + espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 58678 60099 - espX1 100.0 93.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00007 37634 39214 + espX4 99.9 93.3 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00007 68713 70005 - espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 98245 99056 + espY1 99.9 87.0 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00025 33554 37802 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00040 34811 37051 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00040 22795 23751 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00040 27106 27921 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00040 25104 26120 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00040 26117 27109 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00040 33366 34568 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00051 25238 25849 - fimA 100.0 88.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00051 23872 24597 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00051 21169 23805 - fimD 100.0 98.6 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00051 20629 21162 - fimF 100.0 97.9 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00051 20113 20616 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00051 19191 20102 - fimH 100.0 97.4 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00051 24634 25173 - fimI 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00033 30503 32524 + fyuA 100.0 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00033 17403 26894 + irp1 100.0 99.7 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00033 11208 17315 + irp2 100.0 99.5 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00006 103766 104806 - ompA 100.0 98.0 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00025 46912 47665 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00025 45345 46988 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00025 42830 45355 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00025 42136 42804 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00025 41491 42078 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00033 10058 11017 + ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00033 28795 30372 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00033 8089 9891 - ybtP 100.0 99.7 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00033 6300 8102 - ybtQ 100.0 99.7 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00033 3695 4999 - ybtS 100.0 99.6 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00033 27988 28791 + ybtT 100.0 99.9 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00033 26891 27991 + ybtU 100.0 100.0 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00033 5027 6307 - ybtX 100.0 99.5 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00025 40826 41416 + ykgK/ecpR 100.0 96.8 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID034I
Contig Start End Strand Gene Coverage Identity Accession Product
contig00020 49173 50601 + aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00033 8088 8543 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00033 6681 7331 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00033 5846 6262 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00033 4986 5819 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00044 18008 18754 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 18754 19611 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 21245 22432 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 37076 37846 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 19625 21235 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 29295 33148 - entF 99.3 95.6 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 23755 25005 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00023 23930 25830 + espL1 100.0 97.3 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00026 57649 59835 + espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00046 25267 26320 + espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00002 50505 51926 - espX1 100.0 93.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00026 27853 29433 - espX4 99.9 93.3 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00037 1604 2896 - espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00002 90072 90883 + espY1 99.9 87.0 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00001 204873 209121 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00044 34811 37051 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 22795 23751 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 27106 27921 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 25104 26120 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 26117 27109 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00044 33366 34568 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00053 25238 25849 - fimA 100.0 88.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 23872 24597 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 21169 23805 - fimD 100.0 98.6 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 20629 21162 - fimF 100.0 97.9 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 20113 20616 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 19191 20102 - fimH 100.0 97.4 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 24634 25173 - fimI 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00038 30503 32524 + fyuA 100.0 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00038 17403 26894 + irp1 100.0 99.7 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00038 11208 17315 + irp2 100.0 99.5 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00005 103766 104806 - ompA 100.0 98.0 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00001 218232 218985 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 216665 218308 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 214150 216675 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 213456 214124 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 212811 213398 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00038 10058 11017 + ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00038 28795 30372 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00038 8089 9891 - ybtP 100.0 99.7 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00038 6300 8102 - ybtQ 100.0 99.7 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00038 3695 4999 - ybtS 100.0 99.6 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00038 27988 28791 + ybtT 100.0 99.9 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00038 26891 27991 + ybtU 100.0 100.0 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00038 5027 6307 - ybtX 100.0 99.5 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 212146 212736 + ykgK/ecpR 100.0 96.8 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID037
Contig Start End Strand Gene Coverage Identity Accession Product
contig00111 327 1159 + csgG 99.9 83.3 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00014 58920 59666 - entA 100.0 96.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 59666 60523 - entB 100.0 97.9 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 62157 63344 - entC 100.0 97.6 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 77802 78572 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 60537 62147 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 70021 73874 - entF 99.3 95.5 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 64481 65731 - entS 100.0 95.7 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00062 10888 12787 + espL1 100.0 97.6 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00097 8110 9165 + espR1 83.8 94.3 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00021 62447 63790 + espX1 94.5 95.3 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00014 75537 77777 + fepA 100.0 97.2 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 63521 64477 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 67832 68647 + fepC 100.0 96.6 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 65830 66846 + fepD 100.0 95.5 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 66843 67835 + fepG 100.0 94.8 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 74092 75294 - fes 100.0 96.6 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00071 20418 20951 - fimF 100.0 97.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00071 19902 20405 - fimG 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00071 18980 19891 - fimH 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00030 419 1249 + gspC 100.0 95.2 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00030 1489 3339 + gspD 100.0 97.8 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00030 3339 4832 + gspE 100.0 96.8 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00030 4832 6031 + gspF 100.0 95.9 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00030 6072 6527 + gspG 100.0 95.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00030 6564 7094 + gspH 100.0 94.9 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00030 7091 7462 + gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00030 7495 8064 + gspJ 100.0 96.8 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00030 8061 9038 + gspK 100.0 96.0 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00030 9353 10213 + gspL 100.0 97.1 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00030 10329 10751 + gspM 100.0 98.1 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 103916 104956 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
ID043I
Contig Start End Strand Gene Coverage Identity Accession Product
contig00021 5141 5446 + afaA 100.0 100.0 CAW30797 (afaA) fimbrial major subunit AfaA [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00021 5744 6488 + afaB-I 100.0 99.7 CAW30798 (afaB-I) chaperone AfaB [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00021 6581 9163 + afaC-I 100.0 99.8 CAW30799 (afaC-I) usher AfaC [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00021 10369 10851 + afaE-V 100.0 83.8 CAA62863 (afaE-V) AfaE-V adhesin [Afimbrial adhesin AFA-V (AI013)] [Escherichia coli str. AL 851]
contig00019 52979 54407 + aslA 100.0 97.1 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00028 36589 37617 - chuS 100.0 96.4 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00028 43781 44773 + chuU 100.0 96.6 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00028 44740 45540 + chuV 100.0 98.2 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00028 41265 42602 + chuW 100.0 96.8 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00028 43109 43732 + chuY 100.0 96.5 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00016 13752 14207 - csgB 99.8 83.6 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00016 14962 15612 + csgD 100.0 81.4 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00016 16031 16447 + csgF 99.0 81.0 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00016 16474 17307 + csgG 100.0 83.3 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00021 3996 4223 - daaF 100.0 100.0 AAA23662 (daaF) DaaF protein [F1845 fimbrial adhesin (AI016)] [Escherichia coli str. C1845]
contig00021 9179 9622 + draD 100.0 99.8 AAK16478 (draD) DraD periplasmic protein [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00021 9994 10167 + draP 100.0 98.8 AAK16479 (draP) DraP [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00011 87837 88583 - entA 100.0 97.3 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 88583 89440 - entB 100.0 98.8 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 91074 92261 - entC 100.0 97.3 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 106719 107489 + entD 100.0 92.7 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 89454 91064 - entE 100.0 96.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 98938 102791 - entF 99.3 95.5 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 93398 94648 - entS 100.0 95.7 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00001 112360 114258 - espL1 100.0 96.4 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00037 38824 41010 + espL4 100.0 97.4 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00050 8773 10025 + espR1 99.4 94.3 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00013 104206 105341 - espR4 99.6 84.5 NP_288396 (espR4) Type III secretion system effector espR4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 201678 203099 + espX1 100.0 96.0 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00037 4962 6542 - espX4 100.0 95.9 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00004 36414 37706 - espX5 100.0 95.9 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 162243 162991 - espY1 99.5 95.8 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 145208 145777 - espY2 100.0 94.6 NP_285765 (espY2) Type III secretion system effector EspY2 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00044 31222 32793 + espY3 100.0 95.4 NP_286160 (espY3) Type III secretion system effector EspY3 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00015 39565 41973 + espY4 100.0 96.4 NP_290352 (espY4) Type III secretion system effector EspY4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00007 106400 110650 - fdeC 100.0 95.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00011 104454 106694 + fepA 100.0 96.9 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 92438 93394 + fepB 100.0 97.7 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 96749 97564 + fepC 100.0 96.9 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 94747 95763 + fepD 100.0 96.0 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 95760 96752 + fepG 100.0 94.2 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 103009 104211 - fes 100.0 96.6 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00035 21384 21989 - fimA 100.0 92.2 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00035 23487 24089 - fimB 100.0 99.5 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00035 20018 20743 - fimC 100.0 99.2 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00035 17316 19952 - fimD 100.0 99.0 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00035 22413 23009 - fimE 100.0 99.5 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00035 16776 17309 - fimF 100.0 99.1 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00035 16260 16763 - fimG 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00035 15338 16249 - fimH 100.0 98.9 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00035 20780 21319 - fimI 100.0 99.4 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00031 33458 35479 + fyuA 100.0 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00002 217159 217989 + gspC 100.0 95.2 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 218229 220079 + gspD 100.0 96.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 220079 221572 + gspE 100.0 95.0 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 221572 222771 + gspF 100.0 94.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 222812 223267 + gspG 100.0 96.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 223304 223834 + gspH 100.0 94.7 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 223831 224202 + gspI 100.0 92.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 224235 224804 + gspJ 100.0 94.4 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 224801 225778 + gspK 100.0 96.6 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 226093 226953 + gspL 100.0 94.8 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 227069 227490 + gspM 99.8 92.7 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00031 20358 29849 + irp1 100.0 99.7 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00031 14163 20270 + irp2 100.0 99.7 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00002 242211 243887 - kpsD 100.0 98.3 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00002 228549 229325 + kpsM 100.0 94.8 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00016 85780 86832 + ompA 100.0 95.2 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00006 157140 157691 + papX 100.0 97.5 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00028 37666 39648 - shuA 100.0 98.5 YP_405019 (shuA) outer membrane heme/hemoglobin receptor ShuA [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00028 40253 41245 + shuT 100.0 98.1 YP_405017 (shuT) periplasmic binding protein ShuT [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00028 42615 43109 + shuX 100.0 96.4 YP_405016 (shuX) shu locus protein ShuX [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00007 125982 126735 + yagV/ecpE 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00007 124415 126058 + yagW/ecpD 100.0 99.2 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00007 121900 124425 + yagX/ecpC 100.0 98.0 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00007 121206 121874 + yagY/ecpB 100.0 98.4 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00007 120562 121149 + yagZ/ecpA 100.0 99.0 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00031 13013 13972 + ybtA 100.0 99.2 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00031 31750 33327 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00031 11044 12846 - ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00031 9255 11057 - ybtQ 100.0 99.7 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00031 6650 7954 - ybtS 100.0 99.7 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00031 30943 31746 + ybtT 100.0 99.5 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00031 29846 30946 + ybtU 100.0 99.1 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00031 7982 9262 - ybtX 100.0 99.4 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00007 119897 120487 + ykgK/ecpR 100.0 99.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID045
Contig Start End Strand Gene Coverage Identity Accession Product
contig00058 8036 8152 + astA 100.0 99.1 BAA94855 (astA) heat-stable enterotoxin 1 [EAST1 (VF0216)] [Escherichia coli O44:H18 042]
contig00014 136791 137246 - csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00014 138000 138650 + csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00014 139069 139485 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00014 139512 140345 + csgG 100.0 83.1 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00058 12954 13730 + eltA 100.0 99.5 AAA24685 (eltA) heat-labile enterotoxin A prepeptide (from human) [Heat-labile toxin (LT) (VF0210)] [Escherichia coli]
contig00058 13727 14101 + eltB 100.0 99.2 AAA98064 (eltB) enterotoxin subunit B (from human) [Heat-labile toxin (LT) (VF0210)] [Escherichia coli]
contig00015 99312 100058 - entA 100.0 95.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 100058 100915 - entB 100.0 97.8 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 102549 103736 - entC 100.0 97.6 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 118381 119151 + entD 100.0 94.0 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 100929 102539 - entE 100.0 96.0 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 110624 114453 - entF 98.7 95.9 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 105059 106309 - entS 100.0 95.6 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00019 56923 58791 + espL1 98.4 95.2 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00016 11959 13014 - espR1 83.8 94.2 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00010 39315 40735 + espX1 99.9 95.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00001 242755 244335 - espX4 99.9 92.9 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00001 211962 213254 + espX5 100.0 95.6 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00021 27502 31727 - fdeC 99.4 91.1 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00015 116116 118356 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 104099 105055 + fepB 100.0 97.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 108410 109225 + fepC 100.0 97.1 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 106408 107424 + fepD 100.0 95.6 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 107421 108413 + fepG 100.0 94.7 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 114671 115873 - fes 100.0 96.5 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00010 156459 157063 - fimA 99.8 90.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00066 1111 1713 - fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00010 155093 155818 - fimC 100.0 98.3 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00010 152390 155026 - fimD 100.0 98.7 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00066 37 633 - fimE 100.0 99.2 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00010 151850 152383 - fimF 100.0 97.8 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00010 151334 151837 - fimG 100.0 98.4 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00010 150412 151323 - fimH 100.0 97.7 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00010 155855 156394 - fimI 100.0 99.1 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00013 29070 29900 - gspC 100.0 94.6 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00013 26980 28830 - gspD 100.0 97.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00013 25487 26980 - gspE 100.0 96.0 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00013 24288 25487 - gspF 100.0 96.3 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00013 23792 24247 - gspG 100.0 96.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00013 23225 23755 - gspH 100.0 95.5 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00013 22857 23228 - gspI 100.0 94.6 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00013 22255 22824 - gspJ 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00013 21281 22258 - gspK 100.0 97.3 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00013 20106 20966 - gspL 100.0 97.3 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00013 19568 19990 - gspM 100.0 97.2 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 139311 140351 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00021 40833 41586 + yagV/ecpE 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00021 39266 40909 + yagW/ecpD 100.0 98.6 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00021 36751 39276 + yagX/ecpC 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00021 36057 36725 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00021 35412 35999 + yagZ/ecpA 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00021 34747 35337 + ykgK/ecpR 100.0 97.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID047
Contig Start End Strand Gene Coverage Identity Accession Product
contig00019 53204 54632 + aslA 100.0 96.9 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00012 74057 75085 + chuS 100.0 97.0 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00012 66900 67892 - chuU 100.0 98.8 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00012 66133 66933 - chuV 100.0 98.2 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00012 69071 70408 - chuW 100.0 97.0 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00012 67941 68564 - chuY 100.0 96.6 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00021 49597 50052 - csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00021 50796 51446 + csgD 100.0 81.4 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00021 51865 52281 + csgF 99.0 81.0 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00021 52308 53141 + csgG 100.0 83.3 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00006 65922 66668 - entA 100.0 96.1 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 66668 67525 - entB 100.0 98.5 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 69159 70346 - entC 100.0 97.5 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 84804 85574 + entD 100.0 92.7 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 67539 69149 - entE 100.0 96.0 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 77023 80876 - entF 99.3 95.5 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 71483 72733 - entS 100.0 95.6 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00002 226033 227931 - espL1 100.0 96.6 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00061 6908 9094 + espL4 100.0 96.5 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00034 45165 46586 + espX1 100.0 94.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00011 25482 27062 + espX4 100.0 96.1 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00011 56552 57844 - espX5 100.0 96.3 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00034 5345 6093 - espY1 99.5 95.6 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00007 145005 145574 - espY2 100.0 94.7 NP_285765 (espY2) Type III secretion system effector EspY2 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00025 8357 9928 - espY3 100.0 95.7 NP_286160 (espY3) Type III secretion system effector EspY3 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00013 70981 73389 - espY4 100.0 95.9 NP_290352 (espY4) Type III secretion system effector EspY4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00016 96395 100645 - fdeC 100.0 95.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00006 82539 84779 + fepA 100.0 96.9 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 70523 71479 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 74834 75649 + fepC 100.0 96.7 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 72832 73848 + fepD 100.0 95.9 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 73845 74837 + fepG 100.0 93.8 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 81094 82296 - fes 100.0 96.4 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00023 46260 46865 - fimA 100.0 92.2 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00023 48363 48965 - fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00023 44894 45619 - fimC 100.0 98.5 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00023 42191 44827 - fimD 100.0 98.3 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00023 47289 47885 - fimE 100.0 98.7 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00023 41651 42184 - fimF 100.0 97.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00023 41135 41638 - fimG 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00023 40213 41124 - fimH 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00023 45656 46195 - fimI 100.0 98.3 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00026 35971 37992 + fyuA 100.0 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00008 17255 18085 - gspC 100.0 95.3 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 15165 17015 - gspD 100.0 96.3 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 13672 15165 - gspE 100.0 94.8 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 12473 13672 - gspF 100.0 94.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 11977 12432 - gspG 100.0 96.3 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 11410 11940 - gspH 100.0 96.4 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 11042 11413 - gspI 100.0 94.4 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 10440 11009 - gspJ 100.0 96.0 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 9466 10443 - gspK 100.0 96.9 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 8291 9151 - gspL 100.0 93.6 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 7754 8175 - gspM 99.8 94.3 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00026 22871 32362 + irp1 100.0 99.7 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00026 16676 22783 + irp2 100.0 99.7 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00062 2017 3798 + iucA 100.0 99.8 NP_709454 (iucA) aerobactin synthesis protein IucA [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00062 3799 4746 + iucB 100.0 99.8 NP_709455 (iucB) aerobactin synthesis protein IucB [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00062 4746 6488 + iucC 100.0 98.2 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00062 6485 7806 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00062 7744 10045 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00059 11086 12762 - kpsD 100.0 99.5 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00008 5920 6696 - kpsM 100.0 94.8 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00010 102451 103503 - ompA 100.0 95.2 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00083 749 1062 - papB 99.7 98.4 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00083 1467 1700 + papI 100.0 94.9 NP_755468 (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00121 366 917 + papX 100.0 97.6 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00062 10977 14876 + sat 100.0 99.6 NP_755494 (sat) Aecreted auto transpoter toxin [Sat (VF0231)] [Escherichia coli CFT073]
contig00072 8392 9530 + senB 99.9 99.7 YP_406304 (senB) enterotoxin [ShET2 (VF0258)] [Shigella flexneri 2a str. 301]
contig00012 72026 74008 + shuA 100.0 98.7 YP_405019 (shuA) outer membrane heme/hemoglobin receptor ShuA [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00012 70428 71420 - shuT 100.0 97.9 YP_405017 (shuT) periplasmic binding protein ShuT [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00012 68564 69058 - shuX 100.0 96.0 YP_405016 (shuX) shu locus protein ShuX [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00030 9764 10517 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00030 8197 9840 + yagW/ecpD 100.0 98.8 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00030 5682 8207 + yagX/ecpC 100.0 98.1 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00030 4988 5656 + yagY/ecpB 100.0 97.9 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00030 4343 4930 + yagZ/ecpA 100.0 99.0 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00026 15526 16485 + ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00026 34263 35840 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00026 13557 15359 - ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00026 11768 13570 - ybtQ 100.0 99.7 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00026 9163 10467 - ybtS 100.0 99.7 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00026 33456 34259 + ybtT 100.0 99.9 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00026 32359 33459 + ybtU 100.0 99.9 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00026 10495 11775 - ybtX 100.0 99.5 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00030 3678 4268 + ykgK/ecpR 100.0 99.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID050
Contig Start End Strand Gene Coverage Identity Accession Product
contig00020 49279 50707 + aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00032 40481 40936 - csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00032 41691 42341 + csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00032 42760 43176 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00032 43203 44036 + csgG 100.0 83.3 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00013 99075 99821 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 99821 100678 - entB 100.0 98.0 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 102312 103499 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 118143 118913 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 100692 102302 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 110362 114215 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 104822 106072 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00054 7845 9743 + espL1 100.0 97.6 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00048 19357 21543 + espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00042 25267 26320 + espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00016 48325 49460 - espR4 99.6 84.4 NP_288396 (espR4) Type III secretion system effector espR4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00008 144229 145650 + espX1 100.0 95.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00007 164232 165812 - espX4 99.9 93.3 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00007 133441 134733 + espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00008 105275 106086 - espY1 99.9 87.0 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00001 206256 210504 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00013 115878 118118 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 103862 104818 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 108173 108988 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 106171 107187 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 107184 108176 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 114433 115635 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00027 32354 34375 - fyuA 100.0 100.0 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 37984 47475 - irp1 100.0 99.8 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 47563 53670 - irp2 100.0 99.8 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00058 7015 8802 + iucA 100.0 94.2 NP_755502 (iucA) aerobactin siderophore biosynthesis protein IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00058 8803 9750 + iucB 100.0 95.6 NP_755501 (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00058 9750 11492 + iucC 100.0 96.0 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00058 11489 12810 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00058 12748 15049 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00004 139036 140076 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00001 219611 220364 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 218044 219687 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 215529 218054 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 214835 215503 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 214190 214777 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00027 53861 54820 - ybtA 100.0 99.9 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 34506 36083 - ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 54987 56789 + ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 56776 58578 + ybtQ 100.0 99.8 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 59879 61183 + ybtS 100.0 97.6 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 36087 36890 - ybtT 100.0 99.8 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 36887 37987 - ybtU 100.0 99.7 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 58571 59851 + ybtX 100.0 97.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 213525 214115 + ykgK/ecpR 100.0 97.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID051
Contig Start End Strand Gene Coverage Identity Accession Product
contig00034 2949 3254 - afaA 100.0 100.0 CAW30797 (afaA) fimbrial major subunit AfaA [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00034 1886 2630 - afaB-I 100.0 99.6 CAW30798 (afaB-I) chaperone AfaB [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00158 3718 4161 - afaD 100.0 100.0 CAW30800 (afaD) AfaD [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00158 2480 2965 - afaE-I 100.0 99.8 CAW30801 (afaE-I) AFA-I adhesin [Afa/Dr family (VF0212)] [Escherichia coli O25b:H4 str. FV9863]
contig02639 303 797 + chuX 100.0 100.0 NP_756177 (chuX) putative heme-binding protein ChuX [Chu (VF0227)] [Escherichia coli CFT073]
contig02770 116 571 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig01231 899 1315 + csgF 99.0 81.0 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00034 4175 4402 + daaF 100.0 100.0 AAA23662 (daaF) DaaF protein [F1845 fimbrial adhesin (AI016)] [Escherichia coli str. C1845]
contig00158 3167 3340 - draP 100.0 98.8 AAK16479 (draP) DraP [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00442 98 1285 + entC 100.0 97.5 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00538 177 947 + entD 100.0 94.3 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00748 1084 1854 + entD 100.0 99.9 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00442 1295 2634 + entE 83.2 98.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01069 433 1545 - entS 89.0 95.3 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00580 92 1990 - espL1 100.0 96.2 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00285 1971 3221 + espR1 99.3 94.6 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00169 2908 4047 - espR3 100.0 96.4 NP_288394 (espR3) Type III secretion system effector espR3 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00365 973 2394 + espX1 100.0 93.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00641 168 1748 + espX4 100.0 94.9 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00804 637 1448 + espY1 99.9 87.0 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00052 5564 7972 + espY4 99.8 89.4 NP_290352 (espY4) Type III secretion system effector EspY4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00127 2810 3625 - fepC 100.0 97.1 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig03168 1 672 + fepC 82.3 99.7 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00127 4611 5627 - fepD 100.0 97.0 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00127 3622 4614 - fepG 100.0 95.3 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00312 2572 3177 - fimA 100.0 92.1 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00527 1076 1678 + fimB 100.0 99.7 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00312 1206 1931 - fimC 100.0 99.2 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00235 1766 2299 - fimF 100.0 99.1 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00235 1250 1753 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00235 328 1239 - fimH 100.0 99.0 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00312 1968 2507 - fimI 100.0 99.4 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00138 37 1887 + gspD 100.0 94.8 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00138 1887 3380 + gspE 100.0 94.5 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00138 3380 4579 + gspF 100.0 94.1 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00138 4620 5075 + gspG 100.0 96.3 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig03850 233 550 + gspI 85.5 95.0 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00462 1212 2189 - gspK 100.0 97.2 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00462 37 897 - gspL 100.0 95.0 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01035 307 1167 + gspL 100.0 94.7 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01267 1 366 + gspM 86.5 95.6 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00562 893 1255 + gtrA 100.0 92.0 NP_706257 (gtrA) bactoprenol-linked glucose translocase/flippase [LPS (VF0124)] [Shigella flexneri 2a str. 301]
contig00562 1252 2158 + gtrB 97.5 82.2 NP_706258 (gtrB) bactoprenol glucosyl transferase [LPS (VF0124)] [Shigella flexneri 2a str. 301]
contig00153 659 3733 + hlyA 100.0 99.9 NP_755445 (hlyA) Hemolysin A [Hemolysin (VF0225)] [Escherichia coli CFT073]
contig00153 1 647 + hlyC 95.8 100.0 NP_755444 (hlyC) Hemolysin C [Hemolysin (VF0225)] [Escherichia coli CFT073]
contig00451 901 2337 + hlyD 100.0 99.9 NP_755449 (hlyD) Hemolysin D [Hemolysin (VF0225)] [Escherichia coli CFT073]
contig00167 1596 2825 + iroD 100.0 99.4 NP_753166 (iroD) esterase [Salmochelin (IA013)] [Escherichia coli CFT073]
contig00167 2910 3866 + iroE 100.0 99.2 NP_753165 (iroE) esterase [Salmochelin (IA013)] [Escherichia coli CFT073]
contig00260 300 1247 + iucB 100.0 100.0 NP_709455 (iucB) aerobactin synthesis protein IucB [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00260 1247 2989 + iucC 100.0 99.9 NP_709456 (iucC) aerobactin synthesis protein IucC [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00219 627 2906 + iutA 100.0 99.6 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00387 728 2404 + kpsD 100.0 98.0 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00083 271 2793 + papC 100.0 99.8 NP_755465 (papC) usher protein PapC [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00083 2993 3598 + papD 100.0 99.8 NP_755464 (papD) chaperone protein PapD [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00083 5361 5891 + papF 100.0 99.2 NP_755459 (papF) P pilus minor subunit PapF [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00083 5935 6945 + papG 100.0 99.1 NP_755458 (papG) P pilus tip adhesin PapG [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00083 3635 4216 + papJ 100.0 99.5 NP_755463 (papJ) P pilus assembly protein PapJ [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00083 4223 4762 + papK 100.0 99.1 NP_755461 (papK) P pilus minor subunit PapK [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00090 6059 6610 - papX 100.0 100.0 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00041 799 1937 - senB 99.9 99.7 YP_406304 (senB) enterotoxin [ShET2 (VF0258)] [Shigella flexneri 2a str. 301]
contig01982 511 1005 + shuX 100.0 96.2 YP_405016 (shuX) shu locus protein ShuX [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00082 1 3871 + vat 93.7 99.7 NP_752330 (vat) Haemoglobin protease [Tsh (VF0233)] [Escherichia coli CFT073]
contig02336 340 884 + yagY/ecpB 81.5 98.5 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig03003 177 721 + yagY/ecpB 81.5 98.0 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00625 578 2140 + ybtQ 86.7 99.9 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig01751 292 1095 - ybtT 100.0 99.6 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00633 687 1967 - ybtX 100.0 97.6 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00956 1 497 - ykgK/ecpR 84.1 99.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID052
Contig Start End Strand Gene Coverage Identity Accession Product
contig00015 53014 54442 + aslA 100.0 97.3 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00002 110304 111296 - chuU 100.0 98.6 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00002 109537 110337 - chuV 100.0 98.4 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00002 112475 113812 - chuW 100.0 96.8 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00002 111345 111968 - chuY 100.0 97.0 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00039 10912 11367 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00039 9507 10157 - csgD 100.0 81.3 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00039 8672 9088 - csgF 99.0 81.0 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00039 7812 8645 - csgG 100.0 83.3 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00009 84305 85051 - entA 100.0 95.8 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00009 85051 85908 - entB 100.0 97.2 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00009 87542 88729 - entC 100.0 98.2 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00009 103186 103956 + entD 100.0 93.8 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00009 85922 87532 - entE 100.0 97.6 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00009 95405 99258 - entF 99.3 95.9 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00009 89866 91116 - entS 100.0 95.7 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00003 99918 101816 - espL1 100.0 96.4 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00010 7968 10154 - espL4 100.0 97.1 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00068 14349 15599 - espR1 99.3 94.2 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 120856 122277 + espX1 100.0 94.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00007 84366 86378 - espX2 100.0 96.7 NP_286562 (espX2) Type III secretion system effector EspX2 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00010 42382 43962 + espX4 100.0 94.3 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00010 73473 74765 - espX5 100.0 95.6 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 81432 82151 - espY1 95.6 88.6 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 64452 65021 - espY2 100.0 94.2 NP_285765 (espY2) Type III secretion system effector EspY2 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00006 120255 121826 - espY3 100.0 95.4 NP_286160 (espY3) Type III secretion system effector EspY3 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00016 39417 41825 + espY4 100.0 92.7 NP_290352 (espY4) Type III secretion system effector EspY4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00040 3659 7900 - fdeC 99.8 91.3 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00009 100921 103161 + fepA 100.0 97.2 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00009 88906 89862 + fepB 100.0 97.0 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00009 93217 94032 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00009 91215 92231 + fepD 100.0 95.7 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00009 92228 93220 + fepG 100.0 95.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00009 99476 100678 - fes 100.0 97.4 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00001 38364 39194 - gspC 100.0 95.4 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 36274 38124 - gspD 100.0 95.6 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 34781 36274 - gspE 100.0 95.3 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 33582 34781 - gspF 100.0 91.5 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 33086 33541 - gspG 100.0 97.4 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 32519 33049 - gspH 100.0 96.2 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 32151 32522 - gspI 100.0 94.9 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 31549 32118 - gspJ 100.0 94.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 30575 31552 - gspK 100.0 96.7 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 29400 30260 - gspL 100.0 95.1 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 28863 29284 - gspM 99.8 93.4 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00058 15698 16927 + iroD 100.0 99.6 NP_753166 (iroD) esterase [Salmochelin (IA013)] [Escherichia coli CFT073]
contig00058 17012 17969 + iroE 100.0 99.0 NP_753165 (iroE) esterase [Salmochelin (IA013)] [Escherichia coli CFT073]
contig00001 14169 15845 + kpsD 100.0 99.5 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00001 26913 27689 - kpsM 100.0 94.1 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00012 26051 27103 - ompA 100.0 95.2 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00135 961 1512 + papX 100.0 97.5 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00002 115430 117412 + shuA 100.0 98.8 YP_405019 (shuA) outer membrane heme/hemoglobin receptor ShuA [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00002 117461 118489 + shuS 100.0 96.8 YP_405020 (shuS) heme/hemoglobin transport protein ShuS [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00002 113832 114824 - shuT 100.0 97.8 YP_405017 (shuT) periplasmic binding protein ShuT [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00002 111968 112462 - shuX 100.0 96.6 YP_405016 (shuX) shu locus protein ShuX [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00040 23310 24063 + yagV/ecpE 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00040 21743 23386 + yagW/ecpD 100.0 98.2 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00040 19228 21753 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00040 18534 19202 + yagY/ecpB 100.0 97.6 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00040 17889 18476 + yagZ/ecpA 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00040 17225 17815 + ykgK/ecpR 100.0 98.8 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID057
Contig Start End Strand Gene Coverage Identity Accession Product
contig00076 9106 9561 - csgB 99.8 84.0 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00076 10315 10965 + csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00076 11384 11800 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00076 11827 12660 + csgG 100.0 83.1 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00028 35282 36028 - entA 100.0 96.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00028 36028 36885 - entB 100.0 97.9 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00028 38519 39706 - entC 100.0 97.5 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00028 54350 55120 + entD 100.0 94.0 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00028 36899 38509 - entE 100.0 95.8 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00028 46593 50422 - entF 98.7 95.4 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00028 41029 42279 - entS 100.0 95.6 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00010 11533 13401 - espL1 98.4 95.3 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00047 24866 25921 + espR1 83.8 94.2 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00021 50824 52244 + espX1 99.9 94.7 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00015 55538 57118 - espX4 99.9 93.1 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00015 24726 26018 + espX5 100.0 95.7 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00012 43044 47285 - fdeC 99.8 92.4 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00028 52085 54325 + fepA 100.0 96.8 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00028 40069 41025 + fepB 100.0 97.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00028 44380 45195 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00028 42378 43394 + fepD 100.0 96.0 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00028 43391 44383 + fepG 100.0 94.0 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00028 50640 51842 - fes 100.0 96.8 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00014 97608 98213 - fimA 100.0 92.2 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00054 1113 1715 - fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00014 96242 96967 - fimC 100.0 98.5 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00014 93539 96175 - fimD 100.0 98.3 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00054 39 635 - fimE 100.0 98.7 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00014 92999 93532 - fimF 100.0 97.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00014 92483 92986 - fimG 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00014 91561 92472 - fimH 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00014 97004 97543 - fimI 100.0 98.3 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 144864 145694 - gspC 100.0 95.1 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 142774 144624 - gspD 100.0 97.0 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 141281 142774 - gspE 100.0 97.1 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 140082 141281 - gspF 100.0 96.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 139586 140041 - gspG 100.0 95.6 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 139019 139549 - gspH 100.0 96.0 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 138651 139022 - gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 138049 138618 - gspJ 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 137075 138052 - gspK 100.0 96.1 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 135900 136760 - gspL 100.0 97.6 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 135362 135784 - gspM 100.0 94.1 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 104083 105135 - ompA 100.0 94.3 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00012 56391 57144 + yagV/ecpE 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00012 54824 56467 + yagW/ecpD 100.0 98.6 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00012 52309 54834 + yagX/ecpC 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00012 51615 52283 + yagY/ecpB 100.0 98.7 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00012 50970 51557 + yagZ/ecpA 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00012 50305 50895 + ykgK/ecpR 100.0 97.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID058
Contig Start End Strand Gene Coverage Identity Accession Product
contig00028 619 2047 + aslA 100.0 92.9 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00207 188 643 - csgB 99.8 83.6 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00207 1398 2048 + csgD 100.0 81.3 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00207 2467 2883 + csgF 99.0 81.0 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00207 2910 3743 + csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00807 1 1533 + entE 95.2 95.1 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01126 1 1353 + entE 84.0 94.9 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00258 371 1791 + espX1 99.9 95.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00671 360 1940 - espX4 100.0 96.5 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00134 2697 3989 - espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00933 296 1118 + espY1 100.0 85.9 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00837 592 1548 - fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00545 740 1756 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00156 4587 5192 - fimA 100.0 95.5 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00005 23472 24074 + fimB 100.0 97.7 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00156 3222 3947 - fimC 100.0 99.2 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00156 519 3155 - fimD 100.0 98.9 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00005 24552 25148 + fimE 100.0 98.7 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00156 1 512 - fimF 95.9 99.0 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00446 1 509 + fimF 95.3 97.5 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00446 522 1025 + fimG 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00446 1036 1947 + fimH 100.0 97.4 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00156 3984 4522 - fimI 99.8 98.5 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00453 52 888 + fliG 84.3 80.2 YP_001006742 (fliG) flagellar motor switch protein G [Flagella (VF0394)] [Yersinia enterocolitica subsp. enterocolitica 8081]
contig00017 8334 10355 + fyuA 100.0 99.7 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00004 17541 18371 + gspC 100.0 95.4 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 18611 20461 + gspD 100.0 97.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 20461 21954 + gspE 100.0 96.5 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 21954 23153 + gspF 100.0 96.1 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 23194 23649 + gspG 100.0 95.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 23686 24216 + gspH 100.0 95.3 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 24213 24584 + gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 24617 25186 + gspJ 100.0 96.7 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 25183 26160 + gspK 100.0 96.7 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 26475 27335 + gspL 100.0 97.1 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 9600 15713 + irp2 100.0 99.5 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00060 2881 3921 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00001 8272 9025 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 6705 8348 + yagW/ecpD 100.0 99.0 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 4190 6715 + yagX/ecpC 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 3496 4164 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 2851 3438 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00006 8450 9409 + ybtA 100.0 99.4 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00017 6626 8203 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00006 6481 8283 - ybtP 100.0 99.7 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00006 4692 6494 - ybtQ 100.0 99.7 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00006 2087 3391 - ybtS 100.0 99.8 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00017 5819 6622 + ybtT 100.0 99.6 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00017 4722 5822 + ybtU 100.0 99.2 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00006 3419 4699 - ybtX 100.0 99.8 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 2186 2776 + ykgK/ecpR 100.0 97.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID066
Contig Start End Strand Gene Coverage Identity Accession Product
contig00005 187988 188443 - csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00005 189197 189847 + csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00005 190266 190682 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00005 190709 191542 + csgG 100.0 83.0 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00013 99473 100219 - entA 100.0 95.5 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 100219 101076 - entB 100.0 97.4 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 102710 103897 - entC 100.0 97.6 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 118541 119311 + entD 100.0 94.3 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 101090 102700 - entE 100.0 95.8 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 110784 114613 - entF 98.7 95.4 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 105220 106470 - entS 100.0 95.6 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00001 275319 277218 - espL1 100.0 95.7 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00033 24925 25980 + espR1 83.8 94.1 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00012 18826 20246 + espX1 99.9 95.8 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00009 60834 62414 + espX4 99.9 93.0 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00009 91971 93263 - espX5 100.0 95.9 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00024 38523 42771 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00013 116276 118516 + fepA 100.0 97.1 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 104260 105216 + fepB 100.0 97.1 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 108571 109386 + fepC 100.0 97.2 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 106569 107585 + fepD 100.0 96.0 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 107582 108574 + fepG 100.0 94.0 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 114831 116033 - fes 100.0 96.5 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00012 142063 142668 - fimA 100.0 92.9 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00035 35938 36540 + fimB 100.0 98.0 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00012 140697 141422 - fimC 100.0 98.3 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00012 137994 140630 - fimD 100.0 98.6 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00035 37018 37614 + fimE 100.0 98.7 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00012 137454 137987 - fimF 100.0 98.3 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00012 136938 137441 - fimG 100.0 98.2 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00012 136016 136927 - fimH 100.0 97.4 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00012 141459 141998 - fimI 100.0 99.1 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00001 19552 21573 - fyuA 100.0 99.9 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00002 172124 172954 + gspC 100.0 95.2 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 173194 175044 + gspD 100.0 97.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 175044 176537 + gspE 100.0 96.0 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 176537 177736 + gspF 100.0 96.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 177777 178232 + gspG 100.0 95.6 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 178269 178799 + gspH 100.0 96.0 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 178796 179167 + gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 179200 179769 + gspJ 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 179766 180743 + gspK 100.0 97.8 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 181058 181918 + gspL 100.0 97.3 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 182034 182456 + gspM 100.0 95.0 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 25183 34674 - irp1 100.0 99.7 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 34762 40869 - irp2 100.0 99.5 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00018 77079 78131 - ompA 100.0 94.3 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00024 51877 52630 + yagV/ecpE 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00024 50310 51953 + yagW/ecpD 100.0 98.7 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00024 47795 50320 + yagX/ecpC 100.0 98.6 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00024 47101 47769 + yagY/ecpB 100.0 98.7 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00024 46456 47043 + yagZ/ecpA 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 41060 42019 - ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 21705 23282 - ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 42186 43988 + ybtP 100.0 99.7 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 43975 45777 + ybtQ 100.0 99.7 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 47078 48382 + ybtS 100.0 99.6 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 23286 24089 - ybtT 100.0 99.6 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 24086 25186 - ybtU 100.0 99.5 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 45770 47050 + ybtX 100.0 99.8 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00024 45791 46381 + ykgK/ecpR 100.0 97.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID070
Contig Start End Strand Gene Coverage Identity Accession Product
contig00016 49279 50707 + aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00056 6303 6758 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00056 4898 5548 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00056 4063 4479 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00056 3203 4036 - csgG 100.0 83.3 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00015 68993 69739 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 69739 70596 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 72230 73417 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 88061 88831 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 70610 72220 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 80280 84133 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 74740 75990 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00002 204355 206254 - espL1 100.0 97.5 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 7262 9448 - espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00069 56 1109 + espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00032 46249 47670 + espX1 100.0 93.3 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 37664 39244 + espX4 99.9 93.3 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 68743 70035 - espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00032 7294 8104 - espY1 99.7 87.0 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00026 28754 33002 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00015 85796 88036 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 73780 74736 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 78091 78906 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 76089 77105 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 77102 78094 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 84351 85553 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00053 25238 25849 - fimA 100.0 88.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00059 1110 1712 - fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 23872 24597 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 21169 23805 - fimD 100.0 98.6 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00059 39 633 - fimE 99.7 99.3 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 20629 21162 - fimF 100.0 97.9 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 20113 20616 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 19191 20102 - fimH 100.0 97.4 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 24634 25173 - fimI 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00006 98307 99137 - gspC 100.0 95.0 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 96217 98067 - gspD 100.0 97.3 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 94724 96217 - gspE 100.0 96.1 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 93525 94724 - gspF 100.0 96.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 93029 93484 - gspG 100.0 95.6 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 92462 92992 - gspH 100.0 96.0 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 92094 92465 - gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 91492 92061 - gspJ 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 90518 91495 - gspK 100.0 97.8 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 89343 90203 - gspL 100.0 97.1 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 88805 89227 - gspM 100.0 94.1 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00071 7016 8803 + iucA 100.0 94.2 NP_755502 (iucA) aerobactin siderophore biosynthesis protein IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00071 8804 9751 + iucB 100.0 95.6 NP_755501 (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00071 9751 11493 + iucC 100.0 96.0 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00071 11490 12811 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00071 12749 15050 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00004 75969 77009 - ompA 100.0 98.0 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00026 42110 42863 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00026 40543 42186 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00026 38028 40553 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00026 37334 38002 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00026 36689 37276 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00026 36024 36614 + ykgK/ecpR 100.0 97.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID073
Contig Start End Strand Gene Coverage Identity Accession Product
contig00015 49877 51305 + aslA 100.0 94.0 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00028 45439 46431 - chuU 100.0 97.8 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00028 44672 45472 - chuV 100.0 98.1 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00028 47610 48947 - chuW 100.0 95.8 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00028 46480 47103 - chuY 100.0 95.2 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00074 244 1077 + csgG 100.0 83.3 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00031 31829 32575 - entA 100.0 95.2 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00031 32575 33432 - entB 100.0 97.7 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00031 35066 36253 - entC 100.0 98.0 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00031 50711 51481 + entD 100.0 94.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00031 33446 35056 - entE 100.0 95.6 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00031 42930 46783 - entF 99.2 95.5 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00031 37390 38640 - entS 100.0 96.1 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00035 18791 20689 + espL1 100.0 98.7 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00057 17740 19926 + espL4 100.0 97.8 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00001 219334 220473 - espR3 100.0 94.5 NP_288394 (espR3) Type III secretion system effector espR3 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00001 221297 222406 - espR4 97.3 84.4 NP_288396 (espR4) Type III secretion system effector espR4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00026 56526 57947 + espX1 100.0 96.9 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00069 1 1275 - espX4 80.7 96.5 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00026 17117 17839 - espY1 96.0 93.2 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00026 153 722 - espY2 100.0 98.6 NP_285765 (espY2) Type III secretion system effector EspY2 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 32205 33764 - espY3 99.2 98.7 NP_286160 (espY3) Type III secretion system effector EspY3 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00041 27499 31737 - fdeC 99.7 93.3 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00031 48446 50686 + fepA 100.0 96.5 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00031 36430 37386 + fepB 100.0 97.8 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00031 40741 41556 + fepC 100.0 97.1 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00031 38739 39755 + fepD 100.0 96.7 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00031 39752 40744 + fepG 100.0 94.7 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00031 47001 48203 - fes 100.0 96.8 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00081 15577 16188 - fimA 100.0 88.4 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00066 1120 1722 - fimB 100.0 97.7 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00081 14211 14936 - fimC 100.0 98.6 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00081 11508 14144 - fimD 100.0 98.4 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00066 49 643 - fimE 99.7 99.2 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00081 10968 11501 - fimF 100.0 97.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00081 10452 10955 - fimG 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00081 9530 10441 - fimH 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00081 14973 15512 - fimI 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00049 30592 32613 + fyuA 100.0 99.5 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00049 17492 26983 + irp1 100.0 99.7 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00049 11297 17404 + irp2 100.0 99.5 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00098 2142 3929 + iucA 100.0 100.0 NP_755502 (iucA) aerobactin siderophore biosynthesis protein IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00098 3930 4877 + iucB 100.0 99.9 NP_755501 (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00098 4877 6619 + iucC 100.0 99.9 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00098 6616 7953 + iucD 100.0 99.9 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00098 7875 10154 + iutA 100.0 99.7 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00032 15561 16613 - ompA 100.0 95.2 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00028 50564 52546 + shuA 100.0 99.3 YP_405019 (shuA) outer membrane heme/hemoglobin receptor ShuA [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00028 52595 53623 + shuS 100.0 98.5 YP_405020 (shuS) heme/hemoglobin transport protein ShuS [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00028 48967 49959 - shuT 100.0 97.6 YP_405017 (shuT) periplasmic binding protein ShuT [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00028 47103 47597 - shuX 100.0 98.2 YP_405016 (shuX) shu locus protein ShuX [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00049 10147 11106 + ybtA 100.0 99.4 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00049 28884 30461 + ybtE 100.0 99.9 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00049 8178 9980 - ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00049 6389 8191 - ybtQ 100.0 99.6 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00049 3784 5088 - ybtS 100.0 99.5 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00049 28077 28880 + ybtT 100.0 99.6 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00049 26980 28080 + ybtU 100.0 100.0 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00049 5116 6396 - ybtX 100.0 99.6 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
ID081
Contig Start End Strand Gene Coverage Identity Accession Product
contig00016 49279 50707 + aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00035 40481 40936 - csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00035 41691 42341 + csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00035 42760 43176 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00035 43203 44036 + csgG 100.0 83.3 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00012 77381 78127 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 78127 78984 - entB 100.0 98.0 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 80618 81805 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 96449 97219 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 78998 80608 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 88668 92521 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 83128 84378 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00057 18427 20325 + espL1 100.0 97.6 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00056 19357 21543 + espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00044 25267 26320 + espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00013 48323 49458 - espR4 99.6 84.4 NP_288396 (espR4) Type III secretion system effector espR4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00006 144224 145645 + espX1 100.0 95.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00019 8865 10445 + espX4 99.9 93.3 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00019 39944 41236 - espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00006 105270 106081 - espY1 99.9 87.0 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00017 58929 63177 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00012 94184 96424 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 82168 83124 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 86479 87294 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 84477 85493 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 85490 86482 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 92739 93941 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00020 46364 48385 - fyuA 100.0 100.0 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00020 51994 61485 - irp1 100.0 99.8 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00020 61573 67680 - irp2 100.0 99.8 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00072 7015 8802 + iucA 100.0 94.2 NP_755502 (iucA) aerobactin siderophore biosynthesis protein IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00072 8803 9750 + iucB 100.0 95.6 NP_755501 (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00072 9750 11492 + iucC 100.0 96.0 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00072 11489 12810 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00072 12748 15049 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00004 103766 104806 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00017 72284 73037 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00017 70717 72360 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00017 68202 70727 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00017 67508 68176 + yagY/ecpB 100.0 97.9 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00017 66863 67450 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00020 67871 68830 - ybtA 100.0 99.9 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00020 48516 50093 - ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00020 68997 70799 + ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00020 70786 72588 + ybtQ 100.0 99.8 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00020 73889 75193 + ybtS 100.0 97.6 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00020 50097 50900 - ybtT 100.0 99.8 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00020 50897 51997 - ybtU 100.0 99.7 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00020 72581 73861 + ybtX 100.0 97.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00017 66198 66788 + ykgK/ecpR 100.0 97.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID096I
Contig Start End Strand Gene Coverage Identity Accession Product
contig00147 4955 5700 + entA 99.2 80.4 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00147 4094 4945 + entB 99.2 81.7 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00300 127 898 + fepC 94.6 80.7 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00009 58424 60445 + fyuA 100.0 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00009 45324 54815 + irp1 100.0 99.8 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00009 39129 45236 + irp2 100.0 99.8 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00011 18165 19235 - ompA 100.0 83.8 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00142 10793 11546 + yagV/ecpE 99.7 85.4 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00142 9224 10867 + yagW/ecpD 100.0 88.7 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00142 6709 9234 + yagX/ecpC 100.0 87.3 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00142 6015 6683 + yagY/ecpB 100.0 87.9 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00142 5368 5951 + yagZ/ecpA 99.3 90.1 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00009 37979 38938 + ybtA 100.0 99.9 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00009 56716 58293 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00009 36010 37812 - ybtP 100.0 99.7 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00009 34221 36023 - ybtQ 100.0 99.9 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00009 31616 32920 - ybtS 100.0 97.6 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00009 55909 56712 + ybtT 100.0 99.9 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00009 54812 55912 + ybtU 100.0 99.6 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00009 32948 34228 - ybtX 100.0 97.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00142 4713 5293 + ykgK/ecpR 98.3 86.2 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID098
Contig Start End Strand Gene Coverage Identity Accession Product
contig00083 2493 3921 + aslA 100.0 97.4 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00053 25876 26904 + chuS 100.0 98.0 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00053 22247 23239 - chuT 100.0 99.4 NP_756175 (chuT) periplasmic heme-binding protein ChuT [Chu (VF0227)] [Escherichia coli CFT073]
contig00053 18719 19711 - chuU 100.0 99.1 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00053 17952 18752 - chuV 100.0 98.4 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00053 20890 22227 - chuW 100.0 97.9 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00053 19760 20383 - chuY 100.0 96.3 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00045 28463 31507 - cnf1 100.0 99.9 CAA50007 (cnf1) cytotoxic necrotizing factor 1 [CNF-1 (VF0240)] [Escherichia coli str. E-B35]
contig00023 46133 46588 - csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00131 67 717 + csgD 100.0 81.3 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00131 1136 1552 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00131 1579 2412 + csgG 100.0 82.8 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00002 30548 31294 - entA 100.0 96.4 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 31294 32151 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 33785 34972 - entC 100.0 98.4 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 49429 50199 + entD 100.0 93.9 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 32165 33775 - entE 100.0 96.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 41648 45501 - entF 99.3 96.3 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 36109 37359 - entS 100.0 96.3 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00004 472 2370 - espL1 100.0 96.0 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00016 49067 50317 + espR1 99.3 94.7 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00042 21241 22821 + espX4 100.0 96.0 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00074 15179 15927 + espY1 99.5 94.4 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00059 7955 8524 + espY2 100.0 94.0 NP_285765 (espY2) Type III secretion system effector EspY2 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00043 1 2266 + espY4 93.9 88.8 NP_290352 (espY4) Type III secretion system effector EspY4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00012 44495 48736 - fdeC 99.8 92.0 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00002 47164 49404 + fepA 100.0 97.9 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 35149 36105 + fepB 100.0 98.2 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 39460 40275 + fepC 100.0 97.7 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 37458 38474 + fepD 100.0 96.5 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 38471 39463 + fepG 100.0 94.5 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 45719 46921 - fes 100.0 97.0 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00146 7502 8107 - fimA 100.0 92.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00278 709 1311 + fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00146 6136 6861 - fimC 100.0 98.5 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00146 3433 6069 - fimD 100.0 98.3 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00278 1789 2385 + fimE 100.0 98.7 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00146 2893 3426 - fimF 100.0 97.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00146 2377 2880 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00146 1455 2366 - fimH 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00146 6898 7437 - fimI 100.0 98.3 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00157 1 1741 + fyuA 86.1 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00055 17448 18278 + gspC 100.0 94.7 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00055 18518 20368 + gspD 100.0 96.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00055 20368 21861 + gspE 100.0 94.6 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00055 21861 23060 + gspF 100.0 94.5 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00055 23101 23556 + gspG 100.0 96.3 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00055 23593 24123 + gspH 100.0 94.7 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00055 24120 24491 + gspI 100.0 92.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00055 24524 25093 + gspJ 100.0 94.6 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00055 25090 26067 + gspK 100.0 96.5 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00055 26382 27242 + gspL 100.0 95.0 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00055 27358 27779 + gspM 99.8 97.4 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00127 5764 8838 + hlyA 100.0 98.6 NP_755445 (hlyA) Hemolysin A [Hemolysin (VF0225)] [Escherichia coli CFT073]
contig00127 8909 10812 + hlyB 89.6 99.1 NP_755448 (hlyB) Hemolysin B [Hemolysin (VF0225)] [Escherichia coli CFT073]
contig00127 5078 5752 + hlyC 100.0 100.0 NP_755444 (hlyC) Hemolysin C [Hemolysin (VF0225)] [Escherichia coli CFT073]
contig00045 32453 33889 - hlyD 100.0 99.9 NP_755449 (hlyD) Hemolysin D [Hemolysin (VF0225)] [Escherichia coli CFT073]
contig00099 7302 9089 + iucA 100.0 94.3 NP_755502 (iucA) aerobactin siderophore biosynthesis protein IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00099 9090 10037 + iucB 100.0 95.7 NP_755501 (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00099 10037 11779 + iucC 100.0 96.1 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00099 11776 13097 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00099 13035 15336 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00085 12599 14275 - kpsD 100.0 97.9 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00055 28837 29613 + kpsM 100.0 95.1 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00010 78486 79333 - ompA 81.5 97.8 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00045 8346 8660 - papB 100.0 99.4 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00045 4365 6887 - papC 100.0 99.7 NP_755465 (papC) usher protein PapC [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00045 3560 4165 - papD 100.0 99.8 NP_755464 (papD) chaperone protein PapD [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00045 1848 2387 - papE 100.0 100.0 NP_755460 (papE) P pilus minor subunit PapE [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00045 1273 1803 - papF 100.0 100.0 NP_755459 (papF) P pilus minor subunit PapF [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00045 219 1229 - papG 100.0 99.1 NP_755458 (papG) P pilus tip adhesin PapG [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00045 6934 7521 - papH 100.0 98.0 NP_755466 (papH) P pilus termination subunit PapH [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00045 9065 9298 + papI 100.0 94.0 NP_755468 (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00045 2942 3523 - papJ 100.0 98.6 NP_755463 (papJ) P pilus assembly protein PapJ [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00045 2396 2935 - papK 100.0 99.3 NP_755461 (papK) P pilus minor subunit PapK [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00458 173 724 + papX 100.0 97.5 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00053 23845 25827 + shuA 100.0 98.0 YP_405019 (shuA) outer membrane heme/hemoglobin receptor ShuA [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00053 20383 20877 - shuX 100.0 96.6 YP_405016 (shuX) shu locus protein ShuX [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00012 64148 64901 + yagV/ecpE 99.7 98.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00012 62581 64224 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00012 60066 62591 + yagX/ecpC 100.0 98.5 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00012 59372 60040 + yagY/ecpB 100.0 99.0 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00012 58727 59314 + yagZ/ecpA 100.0 99.0 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00329 353 1997 + ybtQ 91.2 99.9 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00227 2036 3183 - ybtS 88.0 97.7 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00440 1 663 - ybtT 82.5 99.8 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00467 1 1046 - ybtX 81.7 99.4 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00488 27 1055 - ybtX 80.3 97.3 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00012 58062 58652 + ykgK/ecpR 100.0 99.7 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID099
Contig Start End Strand Gene Coverage Identity Accession Product
contig00032 15069 16497 + aslA 100.0 92.9 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00001 128600 129055 + csgB 99.8 83.6 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00001 127195 127845 - csgD 100.0 81.3 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00001 126360 126776 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00001 125500 126333 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00036 28650 29396 - entA 100.0 96.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00036 29396 30253 - entB 100.0 98.4 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00036 31887 33074 - entC 100.0 98.3 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00036 47718 48488 + entD 100.0 95.1 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00036 30267 31877 - entE 100.0 95.8 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00036 39937 43790 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00036 34397 35647 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00086 125 1545 + espX1 99.9 95.3 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00019 18898 20478 + espX4 99.9 94.1 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00019 49982 51274 - espX5 100.0 97.0 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00008 94198 94994 - espY1 99.9 88.7 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00084 24 4272 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00036 45453 47693 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00036 33437 34393 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00036 37748 38563 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00036 35746 36762 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00036 36759 37751 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00036 44008 45210 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00073 12316 12927 - fimA 100.0 88.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00082 1110 1712 - fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00073 10950 11675 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00073 8247 10883 - fimD 100.0 98.6 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00082 39 633 - fimE 99.7 99.3 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00073 7707 8240 - fimF 100.0 97.9 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00073 7191 7694 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00073 6269 7180 - fimH 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00073 11712 12251 - fimI 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00001 54588 55628 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00068 5970 6723 + yagV/ecpE 99.7 97.0 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00068 4400 6046 + yagW/ecpD 100.0 98.8 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00068 1886 4410 + yagX/ecpC 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00068 1192 1860 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00068 547 1134 + yagZ/ecpA 100.0 99.0 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID24
Contig Start End Strand Gene Coverage Identity Accession Product
contig00022 49173 50601 + aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00032 8088 8543 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00032 6681 7331 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00032 5846 6262 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00032 4986 5819 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00038 18008 18754 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00038 18754 19611 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00038 21245 22432 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00038 37076 37846 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00038 19625 21235 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00038 29295 33148 - entF 99.3 95.6 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00038 23755 25005 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00025 23930 25830 + espL1 100.0 97.3 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00015 102829 105015 + espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00040 25267 26320 + espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 69187 70608 - espX1 100.0 93.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00015 73033 74613 - espX4 99.9 93.3 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00015 42242 43534 + espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 108754 109565 + espY1 99.9 87.0 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00001 265193 269441 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00038 34811 37051 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00038 22795 23751 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00038 27106 27921 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00038 25104 26120 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00038 26117 27109 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00038 33366 34568 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00048 25238 25849 - fimA 100.0 88.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00048 23872 24597 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00048 21169 23805 - fimD 100.0 98.6 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00048 20629 21162 - fimF 100.0 97.9 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00048 20113 20616 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00048 19191 20102 - fimH 100.0 97.4 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00048 24634 25173 - fimI 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00031 30503 32524 + fyuA 100.0 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00031 17403 26894 + irp1 100.0 99.7 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00031 11208 17315 + irp2 100.0 99.5 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00002 219469 220509 - ompA 100.0 98.0 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00001 278552 279305 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 276985 278628 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 274470 276995 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 273776 274444 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 273131 273718 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00031 10058 11017 + ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00031 28795 30372 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00031 8089 9891 - ybtP 100.0 99.7 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00031 6300 8102 - ybtQ 100.0 99.7 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00031 3695 4999 - ybtS 100.0 99.6 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00031 27988 28791 + ybtT 100.0 99.9 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00031 26891 27991 + ybtU 100.0 100.0 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00031 5027 6307 - ybtX 100.0 99.5 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 272466 273056 + ykgK/ecpR 100.0 96.8 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]


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Multi-Locus Sequence Typing (MLST)


Symbol Meaning
~ novel full length allele similar to match
? partial match to known allele
- allele missing


Scheme ST 1 2 3 4 5 6 7
ID005zero ecoli 1193 adk(14) fumC(14) gyrB(10) icd(200) mdh(17) purA(7) recA(10)
ID008 - -
ID009 kpneumoniae 489 gapA(18) infB(22) mdh(26) pgi(71) phoE(98) rpoB(52) tonB(51)
ID011 ecoli 10 adk(10) fumC(11) gyrB(4) icd(8) mdh(8) purA(8) recA(2)
ID013 ecoli - adk(85) fumC(88) gyrB(78) icd(29) mdh(910?) purA(58) recA(725?)
ID014at24 senterica - aroC(~622) dnaN(~603) hemD(554) hisD(836) purE(~690) sucA(281?) thrA(695?)
ID015at48 ecoli 448 adk(6) fumC(6) gyrB(5) icd(16) mdh(11) purA(8) recA(7)
ID015HW ecoli 448 adk(6) fumC(6) gyrB(5) icd(16) mdh(11) purA(8) recA(7)
ID016at24 ecoli 656 adk(10) fumC(7) gyrB(4) icd(8) mdh(8) purA(8) recA(2)
ID017at48 ecoli 656 adk(10) fumC(7) gyrB(4) icd(8) mdh(8) purA(8) recA(2)
ID018at24 ecoli 1193 adk(14) fumC(14) gyrB(10) icd(200) mdh(17) purA(7) recA(10)
ID020at24 cfreundii - aspC(171) clpX(193) fadD(112) mdh(172) arcA(111) dnaG(84) lysP(~101)
ID021at24 ecoli 6438 adk(6) fumC(11) gyrB(103) icd(113) mdh(8) purA(1) recA(2)
ID025I ecoli 656 adk(10) fumC(7) gyrB(4) icd(8) mdh(8) purA(8) recA(2)
ID025II ecoli 656 adk(10) fumC(7) gyrB(4) icd(8) mdh(8) purA(8) recA(2)
ID025III - -
ID026 ecoli 656 adk(10) fumC(7) gyrB(4) icd(8) mdh(8) purA(8) recA(2)
ID027 ecoli 656 adk(10) fumC(7) gyrB(4) icd(8) mdh(8) purA(8) recA(2)
ID031 ecoli 998 adk(13) fumC(52) gyrB(156) icd(14) mdh(17) purA(25) recA(17)
ID032I ecoli 131 adk(53) fumC(40) gyrB(47) icd(13) mdh(36) purA(28) recA(29)
ID033I ecoli 206 adk(6) fumC(7) gyrB(5) icd(1) mdh(8) purA(18) recA(2)
ID034I ecoli 656 adk(10) fumC(7) gyrB(4) icd(8) mdh(8) purA(8) recA(2)
ID034II ecoli 656 adk(10) fumC(7) gyrB(4) icd(8) mdh(8) purA(8) recA(2)
ID037 ecoli 541 adk(111) fumC(23) gyrB(109) icd(8) mdh(8) purA(8) recA(2)
ID043I ecoli 38 adk(4) fumC(26) gyrB(2) icd(25) mdh(5) purA(5) recA(19)
ID045 ecoli 847 adk(6) fumC(6) gyrB(5) icd(26) mdh(9) purA(13) recA(98)
ID047 ecoli 405 adk(35) fumC(37) gyrB(29) icd(25) mdh(4) purA(5) recA(73)
ID050 ecoli 1284 adk(10) fumC(4) gyrB(4) icd(8) mdh(8) purA(13) recA(73)
ID051 ecoli - adk(~6) fumC(88) gyrB(983?) icd(1250?) mdh(208?) purA(772?) recA(62)
ID052 ecoli 349 adk(34) fumC(36) gyrB(39) icd(87) mdh(67) purA(16) recA(4)
ID057 ecoli 3580 adk(6) fumC(65) gyrB(344) icd(1) mdh(11) purA(13) recA(6)
ID058 ecoli - adk(6) fumC(1509?) gyrB(979?) icd(8) mdh(8) purA(696?) recA(2)
ID066 ecoli 224 adk(6) fumC(4) gyrB(33) icd(16) mdh(11) purA(8) recA(6)
ID070 ecoli 44 adk(10) fumC(11) gyrB(4) icd(8) mdh(8) purA(8) recA(7)
ID073 ecoli 3036 adk(207) fumC(297) gyrB(260) icd(254) mdh(1) purA(261) recA(2)
ID081 ecoli 1284 adk(10) fumC(4) gyrB(4) icd(8) mdh(8) purA(13) recA(73)
ID096I kpneumoniae 39 gapA(2) infB(1) mdh(2) pgi(4) phoE(9) rpoB(1) tonB(14)
ID098 ecoli 648 adk(92) fumC(4) gyrB(87) icd(96) mdh(70) purA(58) recA(2)
ID099 ecoli 206 adk(6) fumC(7) gyrB(5) icd(1) mdh(8) purA(18) recA(2)
ID24 ecoli 656 adk(10) fumC(7) gyrB(4) icd(8) mdh(8) purA(8) recA(2)

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Pangenome Analysis

Pangenome genes summary

Genes Description Number
Core genes (99% <= strains <= 100%) 0
Soft core genes (95% <= strains < 99%) 129
Shell genes (15% <= strains < 95%) 6057
Cloud genes (0% <= strains < 15%) 22414
Total genes (0% <= strains <= 100%) 28600

Schematic representation of genes presence (color) or absence (blank) between samples:


Pangenome tree based on presence/absence of accessory genes representation

Rectangular (phylogram)

Circular (phylogram)

Circular (cladogram)


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Pangenome tree based on core genome alignment representation

Rectangular (phylogram)

Circular (phylogram)

Circular (cladogram)


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Insertion sequence characterization


Field Description
Region Numeric code given to insertion sequence (IS)
Orientation The orientation of IS position: Either forward (F) or reverse (F)
X-cordinates The left coordinate of the position
Y-coordinates The right coordinate of the position
Gap The distance between the x and y coordinates
CallType Describes whether a position hit is novel (not in reference) or known (in the reference)
LeftGene Locus tag ID of the gene closest to the left side of the IS position
LeftGeneDescription Description of the gene feature from the left side of the IS position. By default this is the product position
RightGene Locus tag ID of the gene closest to the right side of the IS position
RightGeneDescription Description of the gene feature from the right side of the IS position. By default this is the product position


Select the sample

ID005zero
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R -1 1950788 1950789 novel b4403 putative rRNA methyltransferase b1867 putative hydrolase
ID009
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R 1994808 1994814 -6 novel b1914 DNA-binding transcriptional activator UvrY b1914 DNA-binding transcriptional activator UvrY
ID013
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 FALSE 2481118 2481137 19 novel* b2367 tripartite efflux pump membrane subunit EmrY b2367 tripartite efflux pump membrane subunit EmrY
ID014at24
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R -1 1040587 1040588 novel b4403 putative rRNA methyltransferase b0980 periplasmic phosphoanhydride phosphatase/multiple inositol-polyphosphate phosphatase
ID015HW
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 F 2192272 2192276 -4 novel b2111 putative fimbrial protein YehD b2112 DUF2574 domain-containing protein YehE
region_1 R -1 1207440 1207441 novel b4403 putative rRNA methyltransferase b1153 e14 prophage; conserved protein YmfQ
region_2 R -1 2471880 2471881 novel b4403 putative rRNA methyltransferase b2355 CPS-53 (KpLE1) prophage; putative uncharacterized protein YfdL
ID015at48
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 F 2192277 2192301 24 novel* b2111 putative fimbrial protein YehD b2112 DUF2574 domain-containing protein YehE
region_1 R -1 1207440 1207441 novel b4403 putative rRNA methyltransferase b1153 e14 prophage; conserved protein YmfQ
region_2 R -1 2471880 2471881 novel b4403 putative rRNA methyltransferase b2355 CPS-53 (KpLE1) prophage; putative uncharacterized protein YfdL
ID016at24
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 FALSE 2481107 2481118 -11 novel b2367 tripartite efflux pump membrane subunit EmrY b2367 tripartite efflux pump membrane subunit EmrY
ID017at48
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 FALSE 2481107 2481118 -11 novel b2367 tripartite efflux pump membrane subunit EmrY b2367 tripartite efflux pump membrane subunit EmrY
ID018at24
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R -1 1950795 1950796 novel b4403 putative rRNA methyltransferase b1867 putative hydrolase
ID020at24
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R -1 2009793 2009794 novel b4403 putative rRNA methyltransferase b1931 putative SOS response-associated peptidase YedK
ID025III
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 FALSE 2481079 2481166 87 novel* b2367 tripartite efflux pump membrane subunit EmrY b2367 tripartite efflux pump membrane subunit EmrY
ID025II
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 FALSE 2481107 2481118 -11 novel b2367 tripartite efflux pump membrane subunit EmrY b2367 tripartite efflux pump membrane subunit EmrY
ID025I
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 FALSE 2481107 2481118 -11 novel b2367 tripartite efflux pump membrane subunit EmrY b2367 tripartite efflux pump membrane subunit EmrY
ID026
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 FALSE 2481107 2481118 -11 novel b2367 tripartite efflux pump membrane subunit EmrY b2367 tripartite efflux pump membrane subunit EmrY
ID027
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 FALSE 2481107 2481118 -11 novel b2367 tripartite efflux pump membrane subunit EmrY b2367 tripartite efflux pump membrane subunit EmrY
ID032I
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R -1 3861012 3861013 novel b4403 putative rRNA methyltransferase b3680 putative DNA-binding transcriptional regulator YidL
region_2 R -1 3864565 3864566 novel b4403 putative rRNA methyltransferase b3684 putative DNA-binding transcriptional regulator YidP
ID034II
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 FALSE 2481107 2481118 -11 novel b2367 tripartite efflux pump membrane subunit EmrY b2367 tripartite efflux pump membrane subunit EmrY
ID034I
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 FALSE 2481107 2481118 -11 novel b2367 tripartite efflux pump membrane subunit EmrY b2367 tripartite efflux pump membrane subunit EmrY
ID043I
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R -1 2082125 2082126 novel b4403 putative rRNA methyltransferase b2010 D-alanyl-D-alanine carboxypeptidase DacD
ID047
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R -1 1427116 1427117 novel b4403 putative rRNA methyltransferase b1368 Rac prophage; putative prophage tail length tape measure domain-containing protein YnaA
ID050
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R 2060961 2060970 -9 novel b1987 DNA-binding transcriptional activator Cbl b1988 DNA-binding transcriptional dual regulator Nac
region_2 F 2990166 2990175 -9 novel b2849 protein YqeK b2849 protein YqeK
region_3 F 3414054 3414067 -13 novel b3265 multidrug efflux pump membrane fusion lipoprotein AcrE b3265 multidrug efflux pump membrane fusion lipoprotein AcrE
region_4 R 3838044 3838053 -9 novel b3659 putative arabinose exporter b3659 putative arabinose exporter
ID058
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 F 2256055 2256065 10 novel b2163 putative DNA-binding transcriptional regulator YeiL b2164 putative pseudouridine transporter
region_1 R 2996594 2997421 827 novel* b2860 IS2 insertion element protein InsB b2861 IS2 insertion element repressor InsA
ID070
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R 735041 735067 26 novel* b0703 conserved protein, rhs-like YbfO b0703 conserved protein, rhs-like YbfO
region_2 F 2860407 2860413 -6 novel b2734 phosphoprotein phosphatase 2 b2734 phosphoprotein phosphatase 2
ID081
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 F 1362334 1362344 -10 novel b1299 DNA-binding transcriptional repressor PuuR b1299 DNA-binding transcriptional repressor PuuR
region_2 R 1474974 1474982 -8 novel b1406 pyridoxine 4-dehydrogenase b1406 pyridoxine 4-dehydrogenase
region_3 F 3414054 3414067 -13 novel b3265 multidrug efflux pump membrane fusion lipoprotein AcrE b3265 multidrug efflux pump membrane fusion lipoprotein AcrE
ID096I
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R -1 361882 361883 novel b4403 putative rRNA methyltransferase b0343 lactose permease
ID098
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R -1 2045798 2045799 novel b4403 putative rRNA methyltransferase b1978 inverse autotransporter adhesin
region_2 R -1 4537613 4537614 novel b4403 putative rRNA methyltransferase b4310 N-acetylneuraminate mutarotase
ID24
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 FALSE 2481107 2481118 -11 novel b2367 tripartite efflux pump membrane subunit EmrY b2367 tripartite efflux pump membrane subunit EmrY


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Citations and Bibliography

If you have used rMAP, please cite:

Sserwadda, I., & Mboowa, G. (2021). rMAP: the Rapid Microbial Analysis Pipeline for ESKAPE bacterial group whole-genome sequence data. Microbial genomics, 7(6), 10.1099/mgen.0.000583. https://doi.org/10.1099/mgen.0.000583


The philosophy of rMAP was built on the foundation of already pre-existing tools. As a token of gratitude to the authors of those numerous tools, please also cite:


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